Rroxscaffold_5G00342440

U-box domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0014277
Physical Location & Seq
Forward (+)
11404347 .. 11406890
2544 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00342440.1

Sequence Viewer

Length: 1257 bp
ATGTGGAATTCGAATAGCAGCAATAGTGGAAAAAGAAGACAATACAATGGGGGGCCAATAGCGGTGGGAGTATCAGGAGACAAAGCCAGCCAAAATGCTTTGAGATGGGCCATTGATAATCTTGTTACTCCAAGCGACGATGTTGTTGTCAAGCTTATCCATGTCACTCAAGGATCACCATGTCCCATTGTCACCCCTGGGAACAGTGGATTGATTAATGAAGGGCAAGCTTTTGATCCCATTGAGGAAATTTTACTTCCCTTTCGTTGCTATTGTACACGCAAACGAGTACCCTTTGAGATTGTTATACTCAAGGATCATGATGTAGCCAAGGCACTGATCGATTACATTTCGCGCCGTGGCATCGGGAATTTAATTCTTGGTGCTTCATCCAGGAATGGGTTTTCTAAGAGACTATTCAAGATATCAGATATTCCAAGTAGTGTGCAAAAGTTGGCACCCGATTTCTGCAATGTATTTACTATCAGCAAAGGAAAGATATGTGCAGTGCGTGCAGCCCGCCGCCGAGTGCCTGCCCTGCCGACCCTCCCGGCAGAATCTAATTACATAGGCAGAGCCGCAAGCAGCAAATCATATGACGAGGTCTCAGTGCAAGAGCCTGACATGGACACTGGCCTCTCTTTTGTAGGCTCAGAAAGACGAAGTACTGATAGCATGTTGTATTCTTTCTACGAAAACTTTGGGCAAGCTGAATTGACCCAAATTTCTTCTATGTCCTTGAACGTGGACATCACTGAATCAGCATCAGAATCAGATTTTGGGAGTTTCGTTGGCCTTAATACTTTGCATGAAATGCCATCAGCGGTGCAGCACAATGGCTCAGGAAATCCATTCTTGTCGCAGAAAGAAGAGATGGAAGAAGAGATGAAAAGTCTTAGAATGGAGCTGAAGCAAACGATAGAGATGTACCATGCAGCCTATAAAGAAGCACTGACAGCAAAGCAGAAGGCCACCGAGCTCCAAGAGGGGAAAATGAAAGAAGAACAGAGACTAGAGGAAGCACTACTCACCTTACAAGCAACTACAGCAGCTTTGAAGAATGAAAAAGAAAAGTCTAAGGCAGCAATGTTGGCAGCAGAAGCAGCTCAGAGGCTTGTTGAAGAAGAGGTGCAAAAGAGAGTGAATGCTGACAAGATGGAGGAGAACGAGGTTTTGGATACTTTTGGCCATGAGCTTGTTACTCTAGTTGGGCAATCTTTTAGCTATGCTAGGATTCCTGCATTACCCAGCAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Usp

Protein Analysis

418

Amino Acids

46.08

Weight (kDa)

5.62

Isoelectric Point (pI)

55.86

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Usp PF00582 19 - 140 1.7e-06 Universal stress protein family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014277)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G20310
malus_domestica MD13G1232700.v1.1 MD13G1233300.v1.1 MD16G1238300.v1.1
prunus_persica Prupe.1G064200_v2.0.a1
pyrus_communis pycom13g20550
rosa_chinensis RchiOBHm_Chr4g0397631
rosa_laevigata RLG00000009422
rosa_multiflora Rmu_co8218642.1_g000001 Rmu_sc0002729.1_g000005
rosa_roxburghii Rroxscaffold_5G00342440
rosa_rugosa Rorug03G0342200
rosa_samantha Rh4AG079500 Rh4BG077500 Rh4CG085400 Rh4DG072500
rosa_wichuraiana Rw4G006510

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 457
AccII CGCG 1 cut(s) 355
AciI CCGC 5 cut(s) 62, 520, 523, 579, 824
AclWI GGATC 3 cut(s) 181, 230, 324
AcoI YGGCCR 1 cut(s) 1186
AcsI RAATTY 4 cut(s) 7, 249, 370, 723
AcuI CTGAAG 1 cut(s) 929
AfaI GTAC 4 cut(s) 277, 291, 667, 929
AfiI CCNNNNNNNGG 1 cut(s) 399
AgsI TTSAA 4 cut(s) 421, 742, 1057, 1121
AjnI CCWGG 2 cut(s) 196, 392
AjuI GAANNNNNNNTTGG 4 cut(s) 762, 794, 1157, 1189
AluBI AGCT 9 cut(s) 154, 230, 710, 907, 979, 1052, 1106, 1195, 1224
AluI AGCT 9 cut(s) 154, 230, 710, 907, 979, 1052, 1106, 1195, 1224
Alw21I GWGCWC 1 cut(s) 981
Alw26I GTCTC 4 cut(s) 72, 406, 610, 1003
AlwI GGATC 3 cut(s) 181, 230, 324
AoxI GGCC 6 cut(s) 53, 108, 634, 793, 969, 1186
ApeKI GCWGC 9 cut(s) 18, 515, 585, 829, 935, 1049, 1082, 1094, 1103
ApoI RAATTY 4 cut(s) 7, 249, 370, 723
AseI ATTAAT 1 cut(s) 216
AspLEI GCGC 1 cut(s) 357
AspS9I GGNCC 2 cut(s) 53, 108
AsuC2I CCSGG 1 cut(s) 551
AsuHPI GGTGA 3 cut(s) 168, 184, 1021
AsuII TTCGAA 1 cut(s) 11
BalI TGGCCA 1 cut(s) 1188
BanI GGYRCC 1 cut(s) 457
BanII GRGCYC 1 cut(s) 981
BbsI GAAGAC 1 cut(s) 43
Bbv12I GWGCWC 1 cut(s) 981
BbvI GCAGC 9 cut(s) 30, 527, 597, 841, 947, 1061, 1094, 1106, 1115
BccI CCATC 4 cut(s) 99, 826, 868, 1150
BceAI ACGGC 1 cut(s) 342
BciT130I CCWGG 2 cut(s) 198, 394
BciVI GTATCC 1 cut(s) 1171
BcnI CCSGG 1 cut(s) 551
BcoDI GTCTC 4 cut(s) 72, 406, 610, 1003
BfaI CTAG 3 cut(s) 1013, 1205, 1230
BfmI CTRYAG 1 cut(s) 1044
BfuI GTATCC 1 cut(s) 1171
BmcAI AGTACT 1 cut(s) 667
Bme1390I CCNGG 3 cut(s) 198, 394, 551
BmgT120I GGNCC 2 cut(s) 53, 108
BmiI GGNNCC 2 cut(s) 54, 459
BmrFI CCNGG 3 cut(s) 198, 394, 551
BmsI GCATC 2 cut(s) 372, 773
BpiI GAAGAC 1 cut(s) 43
Bpu10I CCTNAGC 1 cut(s) 841
Bpu14I TTCGAA 1 cut(s) 11
BpuEI CTTGAG 2 cut(s) 153, 296
BpuMI CCSGG 1 cut(s) 551
Bsa29I ATCGAT 1 cut(s) 342
BsaI GGTCTC 1 cut(s) 610
BsaJI CCNNGG 4 cut(s) 196, 197, 330, 358
Bsc4I CCNNNNNNNGG 1 cut(s) 399
Bse1I ACTGG 1 cut(s) 637
Bse3DI GCAATG 2 cut(s) 478, 1092
BseBI CCWGG 2 cut(s) 198, 394
BseCI ATCGAT 1 cut(s) 342
BseDI CCNNGG 4 cut(s) 196, 197, 330, 358
BseGI GGATG 1 cut(s) 389
BseLI CCNNNNNNNGG 1 cut(s) 399
BseMI GCAATG 2 cut(s) 478, 1092
BseMII CTCAG 4 cut(s) 621, 666, 855, 1121
BseNI ACTGG 1 cut(s) 637
BseRI GAGGAG 1 cut(s) 1175
BseXI GCAGC 9 cut(s) 30, 527, 597, 841, 947, 1061, 1094, 1106, 1115
BseYI CCCAGC 1 cut(s) 1247
BsgI GTGCAG 3 cut(s) 525, 534, 848
Bsh1236I CGCG 1 cut(s) 355
BshFI GGCC 6 cut(s) 55, 110, 636, 795, 971, 1188
BshNI GGYRCC 1 cut(s) 457
BshVI ATCGAT 1 cut(s) 342
BsiHKAI GWGCWC 1 cut(s) 981
BsiSI CCGG 1 cut(s) 551
BslFI GGGAC 1 cut(s) 168
BslI CCNNNNNNNGG 1 cut(s) 399
BsmAI GTCTC 4 cut(s) 72, 406, 610, 1003
BsmFI GGGAC 1 cut(s) 168
BsmI GAATGC 1 cut(s) 1150
BsnI GGCC 6 cut(s) 55, 110, 636, 795, 971, 1188
Bso31I GGTCTC 1 cut(s) 610
Bsp119I TTCGAA 1 cut(s) 11
Bsp1286I GDGCHC 1 cut(s) 981
Bsp1407I TGTACA 1 cut(s) 275
Bsp143I GATC 4 cut(s) 173, 235, 316, 339
BspACI CCGC 5 cut(s) 62, 520, 523, 579, 824
BspANI GGCC 6 cut(s) 55, 110, 636, 795, 971, 1188
BspCNI CTCAG 4 cut(s) 620, 665, 854, 1120
BspDI ATCGAT 1 cut(s) 342
BspFNI CGCG 1 cut(s) 355
BspHI TCATGA 1 cut(s) 319
BspLI GGNNCC 2 cut(s) 54, 459
BspPI GGATC 3 cut(s) 181, 230, 324
BspT104I TTCGAA 1 cut(s) 11
BspT107I GGYRCC 1 cut(s) 457
BspTNI GGTCTC 1 cut(s) 610
BsrDI GCAATG 2 cut(s) 478, 1092
BsrGI TGTACA 1 cut(s) 275
BsrI ACTGG 1 cut(s) 637
BssECI CCNNGG 4 cut(s) 196, 197, 330, 358
BssMI GATC 4 cut(s) 173, 235, 316, 339
BssT1I CCWWGG 1 cut(s) 330
Bst2UI CCWGG 2 cut(s) 198, 394
Bst4CI ACNGT 1 cut(s) 206
Bst6I CTCTTC 3 cut(s) 864, 876, 1119
BstAPI GCANNNNNTGC 2 cut(s) 512, 814
BstAUI TGTACA 1 cut(s) 275
BstBI TTCGAA 1 cut(s) 11
BstC8I GCNNGC 7 cut(s) 88, 228, 513, 520, 534, 583, 708
BstDEI CTNAG 7 cut(s) 408, 607, 652, 841, 896, 1077, 1107
BstDSI CCRYGG 1 cut(s) 358
BstF5I GGATG 1 cut(s) 389
BstFNI CGCG 1 cut(s) 355
BstHHI GCGC 1 cut(s) 357
BstKTI GATC 4 cut(s) 176, 238, 319, 342
BstMAI GTCTC 4 cut(s) 72, 406, 610, 1003
BstMBI GATC 4 cut(s) 173, 235, 316, 339
BstMWI GCNNNNNNNGC 8 cut(s) 512, 538, 814, 956, 1046, 1091, 1100, 1103
BstNI CCWGG 2 cut(s) 198, 394
BstNSI RCATGY 1 cut(s) 679
BstSCI CCNGG 3 cut(s) 196, 392, 549
BstSFI CTRYAG 1 cut(s) 1044
BstUI CGCG 1 cut(s) 355
BstV1I GCAGC 9 cut(s) 30, 527, 597, 841, 947, 1061, 1094, 1106, 1115
BstV2I GAAGAC 1 cut(s) 43
Bsu15I ATCGAT 1 cut(s) 342
BsuI GTATCC 1 cut(s) 1171
BsuRI GGCC 6 cut(s) 55, 110, 636, 795, 971, 1188
BsuTUI ATCGAT 1 cut(s) 342
BtgI CCRYGG 1 cut(s) 358
BtsCI GGATG 1 cut(s) 389
BtsI GCAGTG 1 cut(s) 513
BtsIMutI CAGTG 7 cut(s) 211, 335, 513, 615, 630, 753, 950
Cac8I GCNNGC 7 cut(s) 88, 228, 513, 520, 534, 583, 708
CciI TCATGA 1 cut(s) 319
CfoI GCGC 1 cut(s) 357
Cfr13I GGNCC 2 cut(s) 53, 108
ClaI ATCGAT 1 cut(s) 342
Csp6I GTAC 4 cut(s) 276, 290, 666, 928
CspCI CAANNNNNGTGG 2 cut(s) 45, 80
CviAII CATG 8 cut(s) 161, 180, 320, 625, 676, 809, 932, 1190
CviQI GTAC 4 cut(s) 276, 290, 666, 928
DdeI CTNAG 7 cut(s) 408, 607, 652, 841, 896, 1077, 1107
DpnI GATC 4 cut(s) 175, 237, 318, 341
DpnII GATC 4 cut(s) 173, 235, 316, 339
EaeI YGGCCR 1 cut(s) 1186
Eam1104I CTCTTC 3 cut(s) 864, 876, 1119
EarI CTCTTC 3 cut(s) 864, 876, 1119
Ecl136II GAGCTC 1 cut(s) 979
Eco130I CCWWGG 1 cut(s) 330
Eco24I GRGCYC 1 cut(s) 981
Eco31I GGTCTC 1 cut(s) 610
Eco32I GATATC 1 cut(s) 426
Eco53kI GAGCTC 1 cut(s) 979
Eco57I CTGAAG 1 cut(s) 929
EcoICRI GAGCTC 1 cut(s) 979
EcoRI GAATTC 1 cut(s) 7
EcoRII CCWGG 2 cut(s) 196, 392
EcoRV GATATC 1 cut(s) 426
EcoT14I CCWWGG 1 cut(s) 330
EcoT38I GRGCYC 1 cut(s) 981
ErhI CCWWGG 1 cut(s) 330
FaeI CATG 8 cut(s) 164, 183, 323, 628, 679, 812, 935, 1193
FaqI GGGAC 1 cut(s) 168
FatI CATG 8 cut(s) 160, 179, 319, 624, 675, 808, 931, 1189
FauI CCCGC 1 cut(s) 527
FauNDI CATATG 1 cut(s) 595
FokI GGATG 1 cut(s) 376
FriOI GRGCYC 1 cut(s) 981
FspBI CTAG 3 cut(s) 1013, 1205, 1230
GlaI GCGC 1 cut(s) 356
GsaI CCCAGC 1 cut(s) 1251
HaeIII GGCC 6 cut(s) 55, 110, 636, 795, 971, 1188
HapII CCGG 1 cut(s) 551
HhaI GCGC 1 cut(s) 357
Hin1II CATG 8 cut(s) 164, 183, 323, 628, 679, 812, 935, 1193
Hin6I GCGC 1 cut(s) 355
HinP1I GCGC 1 cut(s) 355
HindIII AAGCTT 2 cut(s) 152, 228
HinfI GANTC 4 cut(s) 557, 758, 770, 1234
HpaII CCGG 1 cut(s) 551
HphI GGTGA 3 cut(s) 168, 184, 1021
Hpy166II GTNNAC 2 cut(s) 278, 748
Hpy188I TCNGA 5 cut(s) 430, 655, 769, 775, 1110
Hpy188III TCNNGA 5 cut(s) 75, 320, 367, 421, 843
Hpy8I GTNNAC 2 cut(s) 278, 748
Hpy99I CGWCG 1 cut(s) 140
HpyAV CCTTC 2 cut(s) 215, 961
HpyCH4III ACNGT 1 cut(s) 206
HpyCH4IV ACGT 1 cut(s) 744
HpyF10VI GCNNNNNNNGC 8 cut(s) 512, 538, 814, 956, 1046, 1091, 1100, 1103
HpyF3I CTNAG 7 cut(s) 408, 607, 652, 841, 896, 1077, 1107
HpySE526I ACGT 1 cut(s) 744
Hsp92II CATG 8 cut(s) 164, 183, 323, 628, 679, 812, 935, 1193
HspAI GCGC 1 cut(s) 355
Kzo9I GATC 4 cut(s) 173, 235, 316, 339
LmnI GCTCC 2 cut(s) 904, 984
Lsp1109I GCAGC 9 cut(s) 30, 527, 597, 841, 947, 1061, 1094, 1106, 1115
LweI GCATC 2 cut(s) 372, 773
MaeI CTAG 3 cut(s) 1013, 1205, 1230
MaeII ACGT 1 cut(s) 744
MaeIII GTNAC 4 cut(s) 124, 163, 190, 1198
MalI GATC 4 cut(s) 175, 237, 318, 341
MboI GATC 4 cut(s) 173, 235, 316, 339
MboII GAAGA 9 cut(s) 48, 720, 881, 890, 893, 1013, 1069, 1133, 1136
MhlI GDGCHC 1 cut(s) 981
MlsI TGGCCA 1 cut(s) 1188
MluCI AATT 8 cut(s) 7, 249, 370, 375, 562, 713, 723, 1252
MluNI TGGCCA 1 cut(s) 1188
Mox20I TGGCCA 1 cut(s) 1188
MscI TGGCCA 1 cut(s) 1188
MseI TTAA 4 cut(s) 216, 374, 798, 1255
Msp20I TGGCCA 1 cut(s) 1188
MspA1I CMGCKG 1 cut(s) 824
MspI CCGG 1 cut(s) 551
MspR9I CCNGG 3 cut(s) 198, 394, 551
Mva1269I GAATGC 1 cut(s) 1150
MvaI CCWGG 2 cut(s) 198, 394
MvnI CGCG 1 cut(s) 355
MwoI GCNNNNNNNGC 8 cut(s) 512, 538, 814, 956, 1046, 1091, 1100, 1103
NciI CCSGG 1 cut(s) 551
NdeI CATATG 1 cut(s) 595
NdeII GATC 4 cut(s) 173, 235, 316, 339
NlaIII CATG 8 cut(s) 164, 183, 323, 628, 679, 812, 935, 1193
NlaIV GGNNCC 2 cut(s) 54, 459
NmeAIII GCCGAG 1 cut(s) 551
NmuCI GTSAC 2 cut(s) 163, 190
NspI RCATGY 1 cut(s) 679
NspV TTCGAA 1 cut(s) 11
PagI TCATGA 1 cut(s) 319
PasI CCCWGGG 1 cut(s) 197
PctI GAATGC 1 cut(s) 1150
PfeI GAWTC 4 cut(s) 557, 758, 770, 1234
PflFI GACNNNGTC 1 cut(s) 602
PfoI TCCNGGA 1 cut(s) 392
PshBI ATTAAT 1 cut(s) 216
Psp124BI GAGCTC 1 cut(s) 981
Psp6I CCWGG 2 cut(s) 196, 392
PspFI CCCAGC 1 cut(s) 1247
PspGI CCWGG 2 cut(s) 196, 392
PspN4I GGNNCC 2 cut(s) 54, 459
PspPI GGNCC 2 cut(s) 53, 108
PsyI GACNNNGTC 1 cut(s) 602
RsaI GTAC 4 cut(s) 277, 291, 667, 929
RsaNI GTAC 4 cut(s) 276, 290, 666, 928
SacI GAGCTC 1 cut(s) 981
SaqAI TTAA 4 cut(s) 216, 374, 798, 1255
Sau3AI GATC 4 cut(s) 173, 235, 316, 339
Sau96I GGNCC 2 cut(s) 53, 108
ScaI AGTACT 1 cut(s) 667
ScrFI CCNGG 3 cut(s) 198, 394, 551
SduI GDGCHC 1 cut(s) 981
SfaNI GCATC 2 cut(s) 372, 773
SfcI CTRYAG 1 cut(s) 1044
SfuI TTCGAA 1 cut(s) 11
SmlI CTYRAG 2 cut(s) 168, 311
SmoI CTYRAG 2 cut(s) 168, 311
Sse9I AATT 8 cut(s) 7, 249, 370, 375, 562, 713, 723, 1252
SsiI CCGC 5 cut(s) 62, 520, 523, 579, 824
SspMI CTAG 3 cut(s) 1013, 1205, 1230
SstI GAGCTC 1 cut(s) 981
StyD4I CCNGG 3 cut(s) 196, 392, 549
StyI CCWWGG 1 cut(s) 330
TaaI ACNGT 1 cut(s) 206
TaiI ACGT 1 cut(s) 747
TaqI TCGA 2 cut(s) 11, 342
TasI AATT 8 cut(s) 7, 249, 370, 375, 562, 713, 723, 1252
TatI WGTACW 2 cut(s) 275, 665
TauI GCSGC 2 cut(s) 525, 581
TfiI GAWTC 4 cut(s) 557, 758, 770, 1234
Tru1I TTAA 4 cut(s) 216, 374, 798, 1255
Tru9I TTAA 4 cut(s) 216, 374, 798, 1255
TscAI CASTG 7 cut(s) 211, 342, 513, 615, 637, 760, 957
TseFI GTSAC 2 cut(s) 163, 190
TseI GCWGC 9 cut(s) 18, 515, 585, 829, 935, 1049, 1082, 1094, 1103
Tsp45I GTSAC 2 cut(s) 163, 190
TspDTI ATGAA 6 cut(s) 234, 378, 825, 902, 1010, 1077
TspRI CASTG 7 cut(s) 211, 342, 513, 615, 637, 760, 957
Tth111I GACNNNGTC 1 cut(s) 602
VspI ATTAAT 1 cut(s) 216
XapI RAATTY 4 cut(s) 7, 249, 370, 723
XceI RCATGY 1 cut(s) 679
XspI CTAG 3 cut(s) 1013, 1205, 1230
ZrmI AGTACT 1 cut(s) 667
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.