MD13G1278800.v1.1

Histone-lysine n-methyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr13
OG0002114
Physical Location & Seq
Forward (+)
39178866 .. 39180203
1338 bp
Loading structure...
UTR
Exon/CDS
Intron
MD13G1278800.v1.1.491

Sequence Viewer

Length: 933 bp
ATGGCAGTTCCCCTCCTGCACCAAAACGACGACGCCTCAACCGACATCCACGCCTCCACCCCCCTCCGCTACCTATCTCTGAACCACGTCTATTCCGCCACCTCTCCTTGCGTCAGCGCCAGCGGGTCCTCCAACGTCATGTCCAAGAAGGTCAAAGCTCGCAAGCTCGACGACTTCGACGATGGCGATGCCGGCGATCAGAATCTTCAGAAGCCCTCTCCCAAACCCTCACTTGTCAATGTCTACTCCCGCCGGGTCAAGCGGCCTCGCCATTGCTCCTCCTTCTTCGATGCTTTGCTTGCCCGGAATGAGCCGGCGGCGGTGAAGATTGAGGCGGTTGATGATGTCGATGGTGAATTCGAGAGGATTTCGGAGACCAAGAAGAAGAGGAACCTCGGCTTTAACGAGTTACTCAAACTGGGGGTTGATTCTAGTATTCTGTCTAATTTGGAGGGTCCTCGGTTGAGGGATTCTCGTAGCAATCCGAAACTTGATGGCAGTAAAAAAGGAGAGAAATTGGGCCTCAACAAGCGGAATTCTTCTTCTAACTGCGAGAAAATTCTTTCGGATTCGCCTTCTGTGAAGAAATGGGTCGGGTTGAGTTTCAAAGATGTCGATCCCAAAACTTTTATTGGATTAGAATGCAAGGCAAGCTCTCTGTCTATTGGCCATTGGATGCTGATTGGTATTCGGGTCGCATTGTGGATTGAATATGAAGATGCTGATGAGGAGGATTTGCTTCTATCAAGCGAGAGAATCAAATTTTATATCTCTCGAGAAGAAATGGAAAGTTTGAGTTTGAGTTGCAGTCCAAAGAGTACAAACAGTGATGTCTATGATTATAATGAAATGGTTGTGTTGGCTGCGAGTTTGGATGACTGCCAAGAACTAGAGCCTGGGGATATCATATGGGCCAAGCTTACTGGTGTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000785 GO:0001067 GO:0003002 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003824 GO:0005488 GO:0005543 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005737 GO:0005886 GO:0006325 GO:0006355 GO:0006464 GO:0006479 GO:0006807 GO:0006996 GO:0007275 GO:0007389 GO:0008150 GO:0008152 GO:0008168 GO:0008170 GO:0008213 GO:0008276 GO:0008289 GO:0008757 GO:0009653 GO:0009791 GO:0009889 GO:0009908 GO:0009909 GO:0009987 GO:0010093 GO:0010314 GO:0010468 GO:0010556 GO:0016020 GO:0016043 GO:0016278 GO:0016279 GO:0016569 GO:0016570 GO:0016571 GO:0016740 GO:0016741 GO:0018022 GO:0018024 GO:0018193 GO:0018205 GO:0019219 GO:0019222 GO:0019538 GO:0022414 GO:0031323 GO:0031326 GO:0032259 GO:0032501 GO:0032502 GO:0034968 GO:0035091 GO:0036211 GO:0042054 GO:0042800 GO:0043167 GO:0043168 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043412 GO:0043414 GO:0044212 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044427 GO:0044446 GO:0044464 GO:0048367 GO:0048437 GO:0048444 GO:0048449 GO:0048518 GO:0048578 GO:0048580 GO:0048582 GO:0048583 GO:0048584 GO:0048586 GO:0048608 GO:0048646 GO:0048731 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051094 GO:0051171 GO:0051239 GO:0051240 GO:0051252 GO:0051276 GO:0051568 GO:0060255 GO:0061458 GO:0065007 GO:0071704 GO:0071840 GO:0071944 GO:0080090 GO:0090567 GO:0090696 GO:0090697 GO:0090698 GO:0090701 GO:0097159 GO:0099402 GO:0140096 GO:1901363 GO:1901564 GO:1901981 GO:1903506 GO:1905392 GO:1905393 GO:2000026 GO:2000028 GO:2000112 GO:2000241 GO:2000243 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FYRC FYRN PHD_2 PWWP SET zf-HC5HC2H_2

Protein Analysis

311

Amino Acids

34.36

Weight (kDa)

5.55

Isoelectric Point (pI)

47.03

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 843
AccI GTMKAC 1 cut(s) 243
AciI CCGC 9 cut(s) 67, 96, 123, 250, 262, 317, 320, 335, 532
AclWI GGATC 1 cut(s) 611
AcoI YGGCCR 1 cut(s) 667
AcsI RAATTY 4 cut(s) 356, 535, 558, 761
AcuI CTGAAG 1 cut(s) 191
AcyI GRCGYC 1 cut(s) 33
AfaI GTAC 1 cut(s) 820
AgsI TTSAA 2 cut(s) 607, 710
AjiI CACGTC 1 cut(s) 88
AjnI CCWGG 1 cut(s) 895
AluBI AGCT 4 cut(s) 158, 166, 654, 919
AluI AGCT 4 cut(s) 158, 166, 654, 919
Alw26I GTCTC 1 cut(s) 368
AlwI GGATC 1 cut(s) 611
Ama87I CYCGRG 1 cut(s) 774
AoxI GGCC 4 cut(s) 263, 520, 667, 912
ApeKI GCWGC 1 cut(s) 863
ApoI RAATTY 4 cut(s) 356, 535, 558, 761
AspLEI GCGC 1 cut(s) 119
AspS9I GGNCC 4 cut(s) 126, 455, 520, 912
AsuC2I CCSGG 2 cut(s) 254, 304
AsuHPI GGTGA 2 cut(s) 334, 365
AvaI CYCGRG 1 cut(s) 774
AvaII GGWCC 2 cut(s) 126, 455
BalI TGGCCA 1 cut(s) 669
BbvI GCAGC 1 cut(s) 850
BccI CCATC 3 cut(s) 176, 344, 488
BcgI CGANNNNNNTGC 2 cut(s) 170, 204
BciT130I CCWGG 1 cut(s) 897
BcnI CCSGG 2 cut(s) 254, 304
BcoDI GTCTC 1 cut(s) 368
BfaI CTAG 2 cut(s) 432, 890
BfoI RGCGCY 1 cut(s) 120
BisI GCNGC 3 cut(s) 263, 318, 864
BlsI GCNGC 3 cut(s) 264, 319, 865
Bme1390I CCNGG 3 cut(s) 254, 304, 897
Bme18I GGWCC 2 cut(s) 126, 455
BmeT110I CYCGRG 1 cut(s) 774
BmgBI CACGTC 1 cut(s) 88
BmgT120I GGNCC 4 cut(s) 126, 455, 520, 912
BmiI GGNNCC 3 cut(s) 127, 392, 456
BmrFI CCNGG 3 cut(s) 254, 304, 897
BmrI ACTGGG 1 cut(s) 428
BmsI GCATC 4 cut(s) 178, 280, 666, 709
BmuI ACTGGG 1 cut(s) 428
BplI GAGNNNNNCTC 2 cut(s) 457, 489
BpuMI CCSGG 2 cut(s) 254, 304
BsaBI GATNNNNATC 2 cut(s) 201, 615
BsaHI GRCGYC 1 cut(s) 33
BsaI GGTCTC 1 cut(s) 368
BsaJI CCNNGG 3 cut(s) 394, 458, 896
Bse118I RCCGGY 2 cut(s) 191, 313
Bse1I ACTGG 2 cut(s) 423, 928
Bse3DI GCAATG 1 cut(s) 271
Bse8I GATNNNNATC 2 cut(s) 201, 615
BseBI CCWGG 1 cut(s) 897
BseDI CCNNGG 3 cut(s) 394, 458, 896
BseGI GGATG 3 cut(s) 45, 681, 880
BseJI GATNNNNATC 2 cut(s) 201, 615
BseMI GCAATG 1 cut(s) 271
BseNI ACTGG 2 cut(s) 423, 928
BseRI GAGGAG 2 cut(s) 268, 743
BseXI GCAGC 1 cut(s) 850
BshFI GGCC 4 cut(s) 265, 522, 669, 914
BsiHKCI CYCGRG 1 cut(s) 774
BsiSI CCGG 4 cut(s) 192, 253, 304, 314
BsmAI GTCTC 1 cut(s) 368
BsmI GAATGC 1 cut(s) 647
BsnI GGCC 4 cut(s) 265, 522, 669, 914
Bso31I GGTCTC 1 cut(s) 368
BsoBI CYCGRG 1 cut(s) 774
Bsp143I GATC 2 cut(s) 196, 616
BspACI CCGC 9 cut(s) 67, 96, 123, 250, 262, 317, 320, 335, 532
BspANI GGCC 4 cut(s) 265, 522, 669, 914
BspLI GGNNCC 3 cut(s) 127, 392, 456
BspPI GGATC 1 cut(s) 611
BspTNI GGTCTC 1 cut(s) 368
BsrDI GCAATG 1 cut(s) 271
BsrFI RCCGGY 2 cut(s) 191, 313
BsrI ACTGG 2 cut(s) 423, 928
BssAI RCCGGY 2 cut(s) 191, 313
BssECI CCNNGG 3 cut(s) 394, 458, 896
BssMI GATC 2 cut(s) 196, 616
BssNI GRCGYC 1 cut(s) 33
Bst2UI CCWGG 1 cut(s) 897
Bst4CI ACNGT 1 cut(s) 827
Bst6I CTCTTC 1 cut(s) 380
BstACI GRCGYC 1 cut(s) 33
BstC8I GCNNGC 7 cut(s) 121, 160, 164, 193, 300, 315, 652
BstF5I GGATG 3 cut(s) 45, 681, 880
BstH2I RGCGCY 1 cut(s) 120
BstHHI GCGC 1 cut(s) 119
BstKTI GATC 2 cut(s) 199, 619
BstMAI GTCTC 1 cut(s) 368
BstMBI GATC 2 cut(s) 196, 616
BstMWI GCNNNNNNNGC 3 cut(s) 192, 299, 651
BstNI CCWGG 1 cut(s) 897
BstSCI CCNGG 3 cut(s) 252, 302, 895
BstV1I GCAGC 1 cut(s) 850
BsuRI GGCC 4 cut(s) 265, 522, 669, 914
BtgZI GCGATG 1 cut(s) 201
BtrI CACGTC 1 cut(s) 88
BtsCI GGATG 3 cut(s) 45, 681, 880
BtsIMutI CAGTG 1 cut(s) 832
Cac8I GCNNGC 7 cut(s) 121, 160, 164, 193, 300, 315, 652
CfoI GCGC 1 cut(s) 119
Cfr10I RCCGGY 2 cut(s) 191, 313
Cfr13I GGNCC 4 cut(s) 126, 455, 520, 912
CseI GACGC 2 cut(s) 41, 100
Csp6I GTAC 1 cut(s) 819
CviAII CATG 1 cut(s) 139
CviQI GTAC 1 cut(s) 819
DpnI GATC 2 cut(s) 198, 618
DpnII GATC 2 cut(s) 196, 616
EaeI YGGCCR 1 cut(s) 667
Eam1104I CTCTTC 1 cut(s) 380
EarI CTCTTC 1 cut(s) 380
EciI GGCGGA 1 cut(s) 85
Eco31I GGTCTC 1 cut(s) 368
Eco32I GATATC 1 cut(s) 904
Eco47I GGWCC 2 cut(s) 126, 455
Eco57I CTGAAG 1 cut(s) 191
Eco88I CYCGRG 1 cut(s) 774
EcoO109I RGGNCCY 2 cut(s) 126, 455
EcoRI GAATTC 2 cut(s) 356, 535
EcoRII CCWGG 1 cut(s) 895
EcoRV GATATC 1 cut(s) 904
FaeI CATG 1 cut(s) 142
FaiI YATR 7 cut(s) 140, 714, 768, 837, 843, 908, 910
FatI CATG 1 cut(s) 138
FauI CCCGC 2 cut(s) 116, 257
FauNDI CATATG 1 cut(s) 908
FblI GTMKAC 1 cut(s) 243
Fnu4HI GCNGC 3 cut(s) 263, 318, 864
FokI GGATG 3 cut(s) 32, 688, 887
Fsp4HI GCNGC 3 cut(s) 263, 318, 864
FspBI CTAG 2 cut(s) 432, 890
GlaI GCGC 1 cut(s) 118
GluI GCNGC 3 cut(s) 263, 318, 864
HaeII RGCGCY 1 cut(s) 120
HaeIII GGCC 4 cut(s) 265, 522, 669, 914
HapII CCGG 4 cut(s) 192, 253, 304, 314
HgaI GACGC 2 cut(s) 41, 100
HhaI GCGC 1 cut(s) 119
Hin1I GRCGYC 1 cut(s) 33
Hin1II CATG 1 cut(s) 142
Hin6I GCGC 1 cut(s) 117
HinP1I GCGC 1 cut(s) 117
HindIII AAGCTT 1 cut(s) 917
HinfI GANTC 5 cut(s) 202, 428, 470, 569, 756
HpaII CCGG 4 cut(s) 192, 253, 304, 314
HphI GGTGA 2 cut(s) 334, 365
Hpy166II GTNNAC 1 cut(s) 244
Hpy188I TCNGA 6 cut(s) 81, 201, 210, 373, 486, 568
Hpy188III TCNNGA 3 cut(s) 361, 774, 776
Hpy8I GTNNAC 1 cut(s) 244
Hpy99I CGWCG 4 cut(s) 32, 35, 173, 182
HpyAV CCTTC 3 cut(s) 142, 292, 585
HpyCH4III ACNGT 1 cut(s) 827
HpyCH4IV ACGT 2 cut(s) 87, 135
HpyCH4V TGCA 3 cut(s) 19, 645, 807
HpyF10VI GCNNNNNNNGC 3 cut(s) 192, 299, 651
HpySE526I ACGT 2 cut(s) 87, 135
Hsp92I GRCGYC 1 cut(s) 33
Hsp92II CATG 1 cut(s) 142
HspAI GCGC 1 cut(s) 117
KroI GCCGGC 2 cut(s) 191, 313
KroNI GCCGGC 2 cut(s) 193, 315
Kzo9I GATC 2 cut(s) 196, 616
LmnI GCTCC 1 cut(s) 281
Lsp1109I GCAGC 1 cut(s) 850
LweI GCATC 4 cut(s) 178, 280, 666, 709
MaeI CTAG 2 cut(s) 432, 890
MaeII ACGT 2 cut(s) 87, 135
MaeIII GTNAC 1 cut(s) 408
MalI GATC 2 cut(s) 198, 618
MboI GATC 2 cut(s) 196, 616
MlsI TGGCCA 1 cut(s) 669
MluCI AATT 6 cut(s) 356, 445, 515, 535, 558, 761
MluNI TGGCCA 1 cut(s) 669
MmeI TCCRAC 1 cut(s) 156
Mox20I TGGCCA 1 cut(s) 669
MroNI GCCGGC 2 cut(s) 191, 313
MscI TGGCCA 1 cut(s) 669
MseI TTAA 1 cut(s) 402
Msp20I TGGCCA 1 cut(s) 669
MspA1I CMGCKG 1 cut(s) 123
MspI CCGG 4 cut(s) 192, 253, 304, 314
MspR9I CCNGG 3 cut(s) 254, 304, 897
Mva1269I GAATGC 1 cut(s) 647
MvaI CCWGG 1 cut(s) 897
MwoI GCNNNNNNNGC 3 cut(s) 192, 299, 651
NaeI GCCGGC 2 cut(s) 193, 315
NciI CCSGG 2 cut(s) 254, 304
NdeI CATATG 1 cut(s) 908
NdeII GATC 2 cut(s) 196, 616
NgoMIV GCCGGC 2 cut(s) 191, 313
NlaIII CATG 1 cut(s) 142
NlaIV GGNNCC 3 cut(s) 127, 392, 456
NmeAIII GCCGAG 1 cut(s) 375
PaeR7I CTCGAG 1 cut(s) 774
PcsI WCGNNNNNNNCGW 5 cut(s) 39, 174, 177, 183, 402
PctI GAATGC 1 cut(s) 647
PdiI GCCGGC 2 cut(s) 193, 315
PfeI GAWTC 5 cut(s) 202, 428, 470, 569, 756
PkrI GCNGC 3 cut(s) 264, 319, 865
PpuMI RGGWCCY 2 cut(s) 126, 455
PsiI TTATAA 1 cut(s) 843
Psp5II RGGWCCY 2 cut(s) 126, 455
Psp6I CCWGG 1 cut(s) 895
PspGI CCWGG 1 cut(s) 895
PspN4I GGNNCC 3 cut(s) 127, 392, 456
PspPI GGNCC 4 cut(s) 126, 455, 520, 912
PspPPI RGGWCCY 2 cut(s) 126, 455
RsaI GTAC 1 cut(s) 820
RsaNI GTAC 1 cut(s) 819
SaqAI TTAA 1 cut(s) 402
SatI GCNGC 3 cut(s) 263, 318, 864
Sau3AI GATC 2 cut(s) 196, 616
Sau96I GGNCC 4 cut(s) 126, 455, 520, 912
ScrFI CCNGG 3 cut(s) 254, 304, 897
SfaNI GCATC 4 cut(s) 178, 280, 666, 709
Sfr274I CTCGAG 1 cut(s) 774
SinI GGWCC 2 cut(s) 126, 455
SlaI CTCGAG 1 cut(s) 774
SmlI CTYRAG 1 cut(s) 774
SmoI CTYRAG 1 cut(s) 774
Sse9I AATT 6 cut(s) 356, 445, 515, 535, 558, 761
SsiI CCGC 9 cut(s) 67, 96, 123, 250, 262, 317, 320, 335, 532
SspMI CTAG 2 cut(s) 432, 890
StyD4I CCNGG 3 cut(s) 252, 302, 895
TaaI ACNGT 1 cut(s) 827
TaiI ACGT 2 cut(s) 90, 138
TaqI TCGA 7 cut(s) 168, 177, 288, 348, 360, 615, 775
TasI AATT 6 cut(s) 356, 445, 515, 535, 558, 761
TatI WGTACW 1 cut(s) 818
TauI GCSGC 2 cut(s) 265, 320
TfiI GAWTC 5 cut(s) 202, 428, 470, 569, 756
Tru1I TTAA 1 cut(s) 402
Tru9I TTAA 1 cut(s) 402
TscAI CASTG 1 cut(s) 832
TseI GCWGC 1 cut(s) 863
TspDTI ATGAA 2 cut(s) 729, 861
TspRI CASTG 1 cut(s) 832
VpaK11BI GGWCC 2 cut(s) 126, 455
XapI RAATTY 4 cut(s) 356, 535, 558, 761
XhoI CTCGAG 1 cut(s) 774
XmiI GTMKAC 1 cut(s) 243
XspI CTAG 2 cut(s) 432, 890
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.