Rh4DG153800

Histone-lysine n-methyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4D
OG0002114
Physical Location & Seq
Forward (+)
30593798 .. 30608163
14366 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4DG153800.1

Sequence Viewer

Length: 3288 bp
ATGGCATTTCCCCTGAAGCATCGAAACGACGACGCCACCATCGACGTCGACACGGCCACGCCCCTCCGCTACCTCTCCCTCGACCACGTCTACTCCGCCACCTCCCCTTGCCGCGTCACCGCCAGCGGCTCCTCCAACGTCATGTCCAAGAAGGTCAAGGCTCGCAAGCTCAACCACTTTGAAAACGACGACGTTTCCGATCACAAGCCCCTTCCTCCTCCTCCTCCTCCGCCTCTTCCGCCGCCGCACAAGCCCGAGATTGTCCGTGTCTACTCGCGCCGCCGCGAAAAGAGGCCCCGCTCCTCGGCGTCCTTCTTCGACGGTCTCGTCGCTAGGGCACAGCCCAAGGCCGTCAAGGTTGAAGAGGTCGATGGGGATGAGTATGTGAGATTGCTGGAGAAGAAGAAGAAGAAGAGGAGGAAGTTCGGGAGTAGCGAGCTAGTCAAATTGGGGGTTGATTCTGATGTTCTGCGTACATTGGACGCGCCTCGATTGAGAGAGTGTCGCAGCAGCAATCAGAAACTTGAGAAATCGAAATCGAGCTCCAAGAAGCGCAATTCTTCTGTTAACGCCGATAAGGTTCCACCTTCCGTGAAGAGATGGGTCGGGTTGAGTTTCACCGGCGTTGATCCGAAAACTTTTATTGGATTACAATGCAAGGTTTATTGGCCATTGGATGCTAATTCATATTCCGGTCGCGTCGTGGGATACCAATCTGACAATACTAAGCATCATGTTGAATATGAAGATGGTGATGAGGAAGATTTGATTCTTTCAAACGAGAGAGTTAAGTTTTATATTTCTCGGGATGAAATGGAGAGTTTGAATTTGAGTGCCAGTCTCAAGAATCTGGACAGTGATGTGTATGATTATAATGAGATGGTTGTGCTAGCAGCGAGTTTGGATGACTGCCAGGAACTAGAGCCTGGGGATATCATCTGGGCCAAGCTTACTGGCTATGCTATGTGGCCAGCAATTGTTGTGGATGAATCACTTATTGGTGACCGTGAAGGCTTAAGTAAAACTTTGGTAGGAGGATCAGTTCCAGTGCAATTCTTTGGTACCCATGACTTTGCAAGGATTAAAGTGAAGCAGGCTATCTCGTTTCTCAAAGGACTTCTTTCTTCATTCCATTTGAAGTGCAGGAAGTCTCGATTTATTAAAAGCTTGGAAGAAGCGAAAATGTATCTCAGTGAACAAAAGCTTCCTAGAAGAATGCTACGATTGCAAAAAGGAATAAACGTTGATGATTGTGAAAGTGAAAATGGTGAGGATGGAATGCGCACTGATTCAGGAGAAGGATGTCTGGATGATGTCATGATTCCAAGGTCGCTGGATTGCCTTGGAACTTCTGTGTTAGTGATGGGGGATCTGCAGATAATAAGACTAGGAAGGATTGTGAGGGAATCAAAATATTTTCAGGATGAGAGATACGTTTGGCCTGAAGGTTATACTGCAGTAAGGAAGTTTACTTCAATAACAGATCCGAGTGTATGTACCATGTATAAGATGGAGGTACTGAGAGATCCTGAATCAAAAATTCGACCTCTGTTCCAAGTCTCTATAGACACTGGAGAGCAGTTCAAGGGATCGACACCGTCGGCTTGCTGGGATAAAATATACAAAAGGATAAGGAAAATACAAAACAGTGCTCTTGATGATTCTGATGCTAATGCTGATGATGGATTAGAAAAGCTCTATAAATCTGGCTCTGAGATGTTTGGTTTCTCTAAACCTGAAGTTGCAAAACTTATACAGGGGTTATTAAAATCCAGCCATGCTTCAAAATTAGCCAAGTGCAAGTCAACCTCTAGAAGATATCGAGATGTTCCTGTTGGTTACAGACCAGTTCGTGTGGACTGGAAAGACCTTGATAAATGCAGTGTTTGCCACATGGATGAGGAGTACGAAAATAACCTGTTCCTGCAGTGTGACAAATGCAGAATGATGGTCCATGCAAGATGCTATGGAGAATTGGAACCTGTTGGTGGTGTTCTATGGTTATGCAACTTATGCCGGCCTGGAGCTCCTGAACCTCCACCACCTTGCTGCCTTTGTCCTGTAATAGGGGGTGCAATGAAGCCGACAACTGATGGGCGCTGGGCTCATTTGGCTTGCGCCATATGGATACCAGAAACTTGCCTATCTGATATCAAGAGAATGGAACCTATTGATGGGTTGAGCAGAATCAATAAGGATCGTTGGAAGCTGTTATGTAGTATCTGTGGTGTTTCTTATGGAGCCTGTATTCAATGTTCAAACCATACTTGTTATGCGGCCTATCATCCACTTTGTGCACGAGCTGCTGGTCTTTGTGTTGAGCTCGAGGACGAAGAAAGACTGCATCTACTTTCAGTAGATGATGATGAAGAGGGCCAATGCATTCGCTTTCTTTCCTTTTGCAAGAAGCATAAGCAGCCATCTAATGACCGTTCAGCGGCTGGTGACCGGATTGGCCGAACTGTGCGCCAATGTTCAGACTACACCCCACCATCTAATCCATCTGGATGTGCTCGTACTGAGCCATACAATTACTCCTGTAGAAGAGGGAGAAAAGAACCTGAAGCAATAGCTGCTGCATCCTTAAAGCGTTTGTTTGTTGAGAACCAACCTTACTTAGTTGGTGGGTACAGCCAACACCAATTGTCAAGCAATCCACTGCCTCCCAATTGTGTTGTTGGCTCTAAGTTCAGCTCTAGGCTTCTGAGGCTGAAAGCTTCTCAACTTGATGCTCCTACCGATATACTTTCTATGGCTGAGAAGTATAAGTACATGAGGGATACTTTTCGAAAAAGACTAGCGTTTGGAAAATCGGGAATTCATGGATTTGGTATATTTGCGAAGCACCCACATAGAGCAGGGGACATGGTGATTGAATACACTGGTGAACTTGTCAGACCTCCTATAGCTGACAGGAGAGAGCGCTTCATATATAATTCATTGGTGGGGGCTGGGACTTATATGTTCCGGATTGATGATGAACGAGTCATTGATGCTACACGGGCTGGAAGCATTGCTCACCTGATCAATCACTCTTGTGAACCAAATTGCTACTCAAGAGTCATAAGTGTGAATTCTGACGAGCATATAATTATATTTGCAAAGAGAGACATTAAAAGATGGGAAGAGCTTACATATGATTATAGATTTTTTTCAATCGATGAACAACTTGCATGTTATTGTGGTTTTCCGAGATGCCGGGGGGTTGTTAATGATGTTGACTCAGAAGAGCGAGGGACAAAGCTTTATGCGTCTCGCAGTGAATTAATAGATTGGACAGGAGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000785 GO:0001067 GO:0003002 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003824 GO:0005488 GO:0005543 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005737 GO:0005886 GO:0006325 GO:0006355 GO:0006464 GO:0006479 GO:0006807 GO:0006996 GO:0007275 GO:0007389 GO:0008150 GO:0008152 GO:0008168 GO:0008170 GO:0008213 GO:0008276 GO:0008289 GO:0008757 GO:0009653 GO:0009791 GO:0009889 GO:0009908 GO:0009909 GO:0009987 GO:0010093 GO:0010314 GO:0010468 GO:0010556 GO:0016020 GO:0016043 GO:0016278 GO:0016279 GO:0016569 GO:0016570 GO:0016571 GO:0016740 GO:0016741 GO:0018022 GO:0018024 GO:0018193 GO:0018205 GO:0019219 GO:0019222 GO:0019538 GO:0022414 GO:0031323 GO:0031326 GO:0032259 GO:0032501 GO:0032502 GO:0034968 GO:0035091 GO:0036211 GO:0042054 GO:0042800 GO:0043167 GO:0043168 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043412 GO:0043414 GO:0044212 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044427 GO:0044446 GO:0044464 GO:0048367 GO:0048437 GO:0048444 GO:0048449 GO:0048518 GO:0048578 GO:0048580 GO:0048582 GO:0048583 GO:0048584 GO:0048586 GO:0048608 GO:0048646 GO:0048731 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051094 GO:0051171 GO:0051239 GO:0051240 GO:0051252 GO:0051276 GO:0051568 GO:0060255 GO:0061458 GO:0065007 GO:0071704 GO:0071840 GO:0071944 GO:0080090 GO:0090567 GO:0090696 GO:0090697 GO:0090698 GO:0090701 GO:0097159 GO:0099402 GO:0140096 GO:1901363 GO:1901564 GO:1901981 GO:1903506 GO:1905392 GO:1905393 GO:2000026 GO:2000028 GO:2000112 GO:2000241 GO:2000243 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FYRC FYRN PHD_2 PWWP SET zf-HC5HC2H_2

Protein Analysis

1095

Amino Acids

123.78

Weight (kDa)

8.44

Isoelectric Point (pI)

44.27

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PTM_DIR17_Tudor PF21743 227 - 257 6e-07 PTM/DIR17-like, Tudor domain
PWWP PF00855 310 - 397 1.2e-15 PWWP domain
FYRN PF05964 453 - 508 3.7e-17 F/Y-rich N-terminus
FYRC PF05965 515 - 588 2.1e-11 F/Y rich C-terminus
PHD_2 PF13831 639 - 672 2.4e-06 PHD-finger
zf-HC5HC2H_2 PF13832 682 - 804 1.9e-32 PHD-zinc-finger like domain
zf-HC5HC2H PF13771 703 - 805 8.7e-20 PHD-like zinc-binding domain
SET PF00856 942 - 1048 7.8e-25 SET domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 873
AasI GACNNNNNNGTC 1 cut(s) 326
AatII GACGTC 1 cut(s) 48
Acc16I TGCGCA 1 cut(s) 1283
Acc65I GGTACC 1 cut(s) 1061
AccB1I GGYRCC 1 cut(s) 1061
AccBSI CCGCTC 1 cut(s) 300
AccI GTMKAC 3 cut(s) 48, 90, 270
AccII CGCG 5 cut(s) 114, 277, 285, 485, 699
AccIII TCCGGA 1 cut(s) 2967
AclI AACGTT 1 cut(s) 1242
AclWI GGATC 7 cut(s) 623, 1045, 1377, 1478, 1520, 1597, 2205
AcoI YGGCCR 4 cut(s) 54, 668, 968, 2455
AcsI RAATTY 4 cut(s) 826, 1539, 2817, 3073
AcuI CTGAAG 4 cut(s) 35, 1464, 1758, 2583
AcyI GRCGYC 3 cut(s) 33, 45, 308
AdeI CACNNNGTG 1 cut(s) 2294
AfaI GTAC 8 cut(s) 475, 1063, 1498, 1518, 1907, 2518, 2630, 2771
AfeI AGCGCT 1 cut(s) 2924
AfiI CCNNNNNNNGG 5 cut(s) 304, 1988, 2066, 2174, 2437
AflII CTTAAG 1 cut(s) 1015
AjiI CACGTC 1 cut(s) 88
AjnI CCWGG 3 cut(s) 912, 925, 2020
AjuI GAANNNNNNNTTGG 2 cut(s) 981, 1013
AleI CACNNNNGTG 1 cut(s) 3036
AloI GAACNNNNNNTCC 2 cut(s) 1026, 1058
Alw21I GWGCWC 6 cut(s) 545, 1654, 2029, 2299, 2325, 2515
Alw26I GTCTC 6 cut(s) 329, 845, 1155, 1564, 3102, 3258
Alw44I GTGCAC 1 cut(s) 2295
AlwI GGATC 7 cut(s) 623, 1045, 1377, 1478, 1520, 1597, 2205
AlwNI CAGNNNCTG 1 cut(s) 2441
Ama87I CYCGRG 3 cut(s) 254, 804, 2324
Aor13HI TCCGGA 1 cut(s) 2967
Aor51HI AGCGCT 1 cut(s) 2924
ApaLI GTGCAC 1 cut(s) 2295
ApeKI GCWGC 8 cut(s) 507, 510, 893, 2049, 2303, 2416, 2573, 2576
ApoI RAATTY 4 cut(s) 826, 1539, 2817, 3073
AseI ATTAAT 1 cut(s) 3266
Asp718I GGTACC 1 cut(s) 1061
AspLEI GCGC 8 cut(s) 279, 487, 555, 1284, 2100, 2120, 2469, 2925
AspS9I GGNCC 4 cut(s) 294, 942, 1951, 2374
AsuC2I CCSGG 1 cut(s) 3200
AsuHPI GGTGA 9 cut(s) 109, 610, 764, 1013, 1280, 2456, 2881, 2897, 3011
AsuII TTCGAA 1 cut(s) 2788
AsuNHI GCTAGC 1 cut(s) 889
AvaI CYCGRG 3 cut(s) 254, 804, 2324
AvaII GGWCC 1 cut(s) 1951
BaeGI GKGCMC 2 cut(s) 340, 2299
BalI TGGCCA 2 cut(s) 670, 970
BanI GGYRCC 1 cut(s) 1061
BanII GRGCYC 4 cut(s) 545, 2029, 2107, 2325
BarI GAAGNNNNNNTAC 2 cut(s) 2753, 2785
BauI CACGAG 1 cut(s) 2298
Bbv12I GWGCWC 6 cut(s) 545, 1654, 2029, 2299, 2325, 2515
BbvI GCAGC 8 cut(s) 519, 522, 905, 2036, 2290, 2428, 2560, 2563
BceAI ACGGC 2 cut(s) 69, 335
BciT130I CCWGG 3 cut(s) 914, 927, 2022
BciVI GTATCC 3 cut(s) 701, 2121, 2773
BclI TGATCA 1 cut(s) 3024
BcnI CCSGG 1 cut(s) 3200
BcoDI GTCTC 6 cut(s) 329, 845, 1155, 1564, 3102, 3258
BfaI CTAG 9 cut(s) 333, 440, 890, 920, 1209, 1388, 1812, 2697, 2798
BfmI CTRYAG 6 cut(s) 1373, 1455, 1563, 1925, 2539, 2904
BfoI RGCGCY 2 cut(s) 2101, 2926
BfrI CTTAAG 1 cut(s) 1015
BfuI GTATCC 3 cut(s) 701, 2121, 2773
Bme1390I CCNGG 4 cut(s) 914, 927, 2022, 3200
Bme18I GGWCC 1 cut(s) 1951
BmeT110I CYCGRG 3 cut(s) 254, 804, 2324
BmgBI CACGTC 1 cut(s) 88
BmgT120I GGNCC 4 cut(s) 294, 942, 1951, 2374
BmiI GGNNCC 7 cut(s) 130, 296, 582, 1063, 1980, 2166, 2242
BmrFI CCNGG 4 cut(s) 914, 927, 2022, 3200
BmtI GCTAGC 1 cut(s) 893
BpmI CTGGAG 3 cut(s) 416, 1593, 2043
Bpu14I TTCGAA 1 cut(s) 2788
BpuEI CTTGAG 3 cut(s) 545, 827, 3040
BpuMI CCSGG 1 cut(s) 3200
Bsa29I ATCGAT 1 cut(s) 3159
BsaBI GATNNNNATC 1 cut(s) 712
BsaHI GRCGYC 3 cut(s) 33, 45, 308
BsaI GGTCTC 1 cut(s) 329
BsaJI CCNNGG 6 cut(s) 303, 345, 926, 1325, 1342, 3199
BsaWI WCCGGW 3 cut(s) 692, 2448, 2967
BsaXI ACNNNNNCTCC 6 cut(s) 77, 107, 1026, 1056, 2519, 2549
Bsc4I CCNNNNNNNGG 5 cut(s) 304, 1988, 2066, 2174, 2437
Bse118I RCCGGY 2 cut(s) 620, 2016
Bse1I ACTGG 7 cut(s) 837, 958, 1046, 1576, 1847, 1865, 2887
Bse3DI GCAATG 2 cut(s) 2082, 3012
Bse8I GATNNNNATC 1 cut(s) 712
BseAI TCCGGA 1 cut(s) 2967
BseBI CCWGG 3 cut(s) 914, 927, 2022
BseCI ATCGAT 1 cut(s) 3159
BseDI CCNNGG 6 cut(s) 303, 345, 926, 1325, 1342, 3199
BseJI GATNNNNATC 1 cut(s) 712
BseLI CCNNNNNNNGG 5 cut(s) 304, 1988, 2066, 2174, 2437
BseMI GCAATG 2 cut(s) 2082, 3012
BseMII CTCAG 7 cut(s) 1204, 1511, 1704, 2511, 2696, 2748, 3237
BseNI ACTGG 7 cut(s) 837, 958, 1046, 1576, 1847, 1865, 2887
BseRI GAGGAG 8 cut(s) 121, 207, 210, 213, 216, 292, 430, 1916
BseSI GKGCMC 2 cut(s) 340, 2299
BseXI GCAGC 8 cut(s) 519, 522, 905, 2036, 2290, 2428, 2560, 2563
BseYI CCCAGC 3 cut(s) 1608, 2100, 2951
BsgI GTGCAG 1 cut(s) 1162
Bsh1236I CGCG 5 cut(s) 114, 277, 285, 485, 699
Bsh1285I CGRYCG 1 cut(s) 697
BshNI GGYRCC 1 cut(s) 1061
BshVI ATCGAT 1 cut(s) 3159
BsiEI CGRYCG 1 cut(s) 697
BsiHKAI GWGCWC 6 cut(s) 545, 1654, 2029, 2299, 2325, 2515
BsiHKCI CYCGRG 3 cut(s) 254, 804, 2324
BsiSI CCGG 6 cut(s) 621, 693, 2017, 2449, 2968, 3199
BslFI GGGAC 3 cut(s) 2876, 2968, 3250
BslI CCNNNNNNNGG 5 cut(s) 304, 1988, 2066, 2174, 2437
BsmAI GTCTC 6 cut(s) 329, 845, 1155, 1564, 3102, 3258
BsmBI CGTCTC 1 cut(s) 3258
BsmFI GGGAC 3 cut(s) 2876, 2968, 3250
BsmI GAATGC 3 cut(s) 1221, 1284, 2382
Bso31I GGTCTC 1 cut(s) 329
BsoBI CYCGRG 3 cut(s) 254, 804, 2324
Bsp119I TTCGAA 1 cut(s) 2788
Bsp1286I GDGCHC 8 cut(s) 340, 545, 1654, 2029, 2107, 2299, 2325, 2515
Bsp13I TCCGGA 1 cut(s) 2967
Bsp143I GATC 9 cut(s) 199, 628, 1037, 1369, 1483, 1525, 1589, 2197, 3024
BspCNI CTCAG 7 cut(s) 1203, 1512, 1705, 2512, 2697, 2749, 3236
BspDI ATCGAT 1 cut(s) 3159
BspEI TCCGGA 1 cut(s) 2967
BspFNI CGCG 5 cut(s) 114, 277, 285, 485, 699
BspHI TCATGA 1 cut(s) 1317
BspLI GGNNCC 7 cut(s) 130, 296, 582, 1063, 1980, 2166, 2242
BspMAI CTGCAG 3 cut(s) 1377, 1459, 1929
BspOI GCTAGC 1 cut(s) 893
BspPI GGATC 7 cut(s) 623, 1045, 1377, 1478, 1520, 1597, 2205
BspQI GCTCTTC 2 cut(s) 3120, 3222
BspT104I TTCGAA 1 cut(s) 2788
BspT107I GGYRCC 1 cut(s) 1061
BspTI CTTAAG 1 cut(s) 1015
BspTNI GGTCTC 1 cut(s) 329
BsrBI CCGCTC 1 cut(s) 300
BsrDI GCAATG 2 cut(s) 2082, 3012
BsrFI RCCGGY 2 cut(s) 620, 2016
BsrI ACTGG 7 cut(s) 837, 958, 1046, 1576, 1847, 1865, 2887
BssAI RCCGGY 2 cut(s) 620, 2016
BssECI CCNNGG 6 cut(s) 303, 345, 926, 1325, 1342, 3199
BssMI GATC 9 cut(s) 199, 628, 1037, 1369, 1483, 1525, 1589, 2197, 3024
BssNI GRCGYC 3 cut(s) 33, 45, 308
BssSI CACGAG 1 cut(s) 2298
BssT1I CCWWGG 3 cut(s) 345, 1325, 1342
Bst2BI CACGAG 1 cut(s) 2298
Bst2UI CCWGG 3 cut(s) 914, 927, 2022
Bst4CI ACNGT 7 cut(s) 323, 857, 1007, 1599, 1649, 2432, 2464
Bst6I CTCTTC 8 cut(s) 240, 357, 407, 590, 2364, 2539, 3120, 3222
BstACI GRCGYC 3 cut(s) 33, 45, 308
BstAFI CTTAAG 1 cut(s) 1015
BstAPI GCANNNNNTGC 4 cut(s) 1887, 2013, 2303, 2573
BstBI TTCGAA 1 cut(s) 2788
BstEII GGTNACC 2 cut(s) 1001, 2444
BstENI CCTNNNNNAGG 1 cut(s) 2064
BstFNI CGCG 5 cut(s) 114, 277, 285, 485, 699
BstH2I RGCGCY 2 cut(s) 2101, 2926
BstHHI GCGC 8 cut(s) 279, 487, 555, 1284, 2100, 2120, 2469, 2925
BstKTI GATC 9 cut(s) 202, 631, 1040, 1372, 1486, 1528, 1592, 2200, 3027
BstMAI GTCTC 6 cut(s) 329, 845, 1155, 1564, 3102, 3258
BstMBI GATC 9 cut(s) 199, 628, 1037, 1369, 1483, 1525, 1589, 2197, 3024
BstMCI CGRYCG 1 cut(s) 697
BstNI CCWGG 3 cut(s) 914, 927, 2022
BstNSI RCATGY 1 cut(s) 3177
BstPI GGTNACC 2 cut(s) 1001, 2444
BstSCI CCNGG 4 cut(s) 912, 925, 2020, 3198
BstSFI CTRYAG 6 cut(s) 1373, 1455, 1563, 1925, 2539, 2904
BstSLI GKGCMC 2 cut(s) 340, 2299
BstUI CGCG 5 cut(s) 114, 277, 285, 485, 699
BstV1I GCAGC 8 cut(s) 519, 522, 905, 2036, 2290, 2428, 2560, 2563
BstX2I RGATCY 3 cut(s) 1369, 1483, 1525
BstYI RGATCY 3 cut(s) 1369, 1483, 1525
Bsu15I ATCGAT 1 cut(s) 3159
BsuI GTATCC 3 cut(s) 701, 2121, 2773
BsuTUI ATCGAT 1 cut(s) 3159
BtrI CACGTC 1 cut(s) 88
BtsI GCAGTG 4 cut(s) 1888, 1934, 2657, 3265
CaiI CAGNNNCTG 1 cut(s) 2441
CciI TCATGA 1 cut(s) 1317
CfoI GCGC 8 cut(s) 279, 487, 555, 1284, 2100, 2120, 2469, 2925
Cfr10I RCCGGY 2 cut(s) 620, 2016
Cfr13I GGNCC 4 cut(s) 294, 942, 1951, 2374
ClaI ATCGAT 1 cut(s) 3159
CseI GACGC 6 cut(s) 41, 103, 297, 491, 688, 3240
Csp6I GTAC 8 cut(s) 474, 1062, 1497, 1517, 1906, 2517, 2629, 2770
CspCI CAANNNNNGTGG 2 cut(s) 963, 998
CviQI GTAC 8 cut(s) 474, 1062, 1497, 1517, 1906, 2517, 2629, 2770
DpnI GATC 9 cut(s) 201, 630, 1039, 1371, 1485, 1527, 1591, 2199, 3026
DpnII GATC 9 cut(s) 199, 628, 1037, 1369, 1483, 1525, 1589, 2197, 3024
DraIII CACNNNGTG 1 cut(s) 2294
DrdI GACNNNNNNGTC 1 cut(s) 326
DseDI GACNNNNNNGTC 1 cut(s) 326
EaeI YGGCCR 4 cut(s) 54, 668, 968, 2455
Eam1104I CTCTTC 8 cut(s) 240, 357, 407, 590, 2364, 2539, 3120, 3222
EarI CTCTTC 8 cut(s) 240, 357, 407, 590, 2364, 2539, 3120, 3222
EciI GGCGGA 3 cut(s) 85, 219, 228
Ecl136II GAGCTC 3 cut(s) 543, 2027, 2323
Eco130I CCWWGG 3 cut(s) 345, 1325, 1342
Eco24I GRGCYC 4 cut(s) 545, 2029, 2107, 2325
Eco31I GGTCTC 1 cut(s) 329
Eco32I GATATC 3 cut(s) 934, 1820, 2152
Eco47I GGWCC 1 cut(s) 1951
Eco47III AGCGCT 1 cut(s) 2924
Eco53kI GAGCTC 3 cut(s) 543, 2027, 2323
Eco57I CTGAAG 4 cut(s) 35, 1464, 1758, 2583
Eco88I CYCGRG 3 cut(s) 254, 804, 2324
Eco91I GGTNACC 2 cut(s) 1001, 2444
EcoICRI GAGCTC 3 cut(s) 543, 2027, 2323
EcoNI CCTNNNNNAGG 1 cut(s) 2064
EcoO109I RGGNCCY 1 cut(s) 294
EcoO65I GGTNACC 2 cut(s) 1001, 2444
EcoRI GAATTC 2 cut(s) 2817, 3073
EcoRII CCWGG 3 cut(s) 912, 925, 2020
EcoRV GATATC 3 cut(s) 934, 1820, 2152
EcoT14I CCWWGG 3 cut(s) 345, 1325, 1342
EcoT22I ATGCAT 1 cut(s) 2384
EcoT38I GRGCYC 4 cut(s) 545, 2029, 2107, 2325
ErhI CCWWGG 3 cut(s) 345, 1325, 1342
Esp3I CGTCTC 1 cut(s) 3258
FalI AAGNNNNNCTT 4 cut(s) 1009, 1041, 1104, 1136
FaqI GGGAC 3 cut(s) 2876, 2968, 3250
FauI CCCGC 1 cut(s) 305
FauNDI CATATG 2 cut(s) 2123, 3136
FbaI TGATCA 1 cut(s) 3024
FblI GTMKAC 3 cut(s) 48, 90, 270
FriOI GRGCYC 4 cut(s) 545, 2029, 2107, 2325
FspAI RTGCGCAY 1 cut(s) 1283
FspBI CTAG 9 cut(s) 333, 440, 890, 920, 1209, 1388, 1812, 2697, 2798
FspI TGCGCA 1 cut(s) 1283
GlaI GCGC 8 cut(s) 278, 486, 554, 1283, 2099, 2119, 2468, 2924
GsaI CCCAGC 3 cut(s) 1612, 2104, 2955
GsuI CTGGAG 3 cut(s) 416, 1593, 2043
HaeII RGCGCY 2 cut(s) 2101, 2926
HapII CCGG 6 cut(s) 621, 693, 2017, 2449, 2968, 3199
HgaI GACGC 6 cut(s) 41, 103, 297, 491, 688, 3240
HhaI GCGC 8 cut(s) 279, 487, 555, 1284, 2100, 2120, 2469, 2925
Hin1I GRCGYC 3 cut(s) 33, 45, 308
Hin6I GCGC 8 cut(s) 277, 485, 553, 1282, 2098, 2118, 2467, 2923
HinP1I GCGC 8 cut(s) 277, 485, 553, 1282, 2098, 2118, 2467, 2923
HincII GTYRAC 4 cut(s) 49, 568, 1806, 3220
HindII GTYRAC 4 cut(s) 49, 568, 1806, 3220
HindIII AAGCTT 5 cut(s) 947, 1165, 1202, 2715, 3242
HpaI GTTAAC 1 cut(s) 568
HpaII CCGG 6 cut(s) 621, 693, 2017, 2449, 2968, 3199
HphI GGTGA 9 cut(s) 109, 610, 764, 1013, 1280, 2456, 2881, 2897, 3011
HpyAV CCTTC 8 cut(s) 145, 221, 322, 597, 1004, 1292, 1386, 1439
HpyCH4III ACNGT 7 cut(s) 323, 857, 1007, 1599, 1649, 2432, 2464
HpyCH4IV ACGT 6 cut(s) 45, 87, 138, 192, 1242, 1434
HpySE526I ACGT 6 cut(s) 45, 87, 138, 192, 1242, 1434
Hsp92I GRCGYC 3 cut(s) 33, 45, 308
HspAI GCGC 8 cut(s) 277, 485, 553, 1282, 2098, 2118, 2467, 2923
Kpn2I TCCGGA 1 cut(s) 2967
KpnI GGTACC 1 cut(s) 1065
KroI GCCGGC 1 cut(s) 2016
KroNI GCCGGC 1 cut(s) 2018
Ksp22I TGATCA 1 cut(s) 3024
KspAI GTTAAC 1 cut(s) 568
Kzo9I GATC 9 cut(s) 199, 628, 1037, 1369, 1483, 1525, 1589, 2197, 3024
LguI GCTCTTC 2 cut(s) 3120, 3222
LmnI GCTCC 7 cut(s) 134, 305, 548, 2024, 2032, 2240, 2737
Lsp1109I GCAGC 8 cut(s) 519, 522, 905, 2036, 2290, 2428, 2560, 2563
MaeI CTAG 9 cut(s) 333, 440, 890, 920, 1209, 1388, 1812, 2697, 2798
MaeII ACGT 6 cut(s) 45, 87, 138, 192, 1242, 1434
MaeIII GTNAC 5 cut(s) 115, 1001, 1838, 1931, 2444
MalI GATC 9 cut(s) 201, 630, 1039, 1371, 1485, 1527, 1591, 2199, 3026
MbiI CCGCTC 1 cut(s) 300
MboI GATC 9 cut(s) 199, 628, 1037, 1369, 1483, 1525, 1589, 2197, 3024
MfeI CAATTG 3 cut(s) 975, 2642, 2668
MflI RGATCY 3 cut(s) 1369, 1483, 1525
MhlI GDGCHC 8 cut(s) 340, 545, 1654, 2029, 2107, 2299, 2325, 2515
MlsI TGGCCA 2 cut(s) 670, 970
MluNI TGGCCA 2 cut(s) 670, 970
MlyI GAGTC 3 cut(s) 2994, 3069, 3215
MmeI TCCRAC 2 cut(s) 159, 2183
Mox20I TGGCCA 2 cut(s) 670, 970
Mph1103I ATGCAT 1 cut(s) 2384
MroI TCCGGA 1 cut(s) 2967
MroNI GCCGGC 1 cut(s) 2016
MscI TGGCCA 2 cut(s) 670, 970
MslI CAYNNNNRTG 4 cut(s) 1896, 2506, 3036, 3068
Msp20I TGGCCA 2 cut(s) 670, 970
MspA1I CMGCKG 2 cut(s) 126, 2438
MspCI CTTAAG 1 cut(s) 1015
MspI CCGG 6 cut(s) 621, 693, 2017, 2449, 2968, 3199
MspR9I CCNGG 4 cut(s) 914, 927, 2022, 3200
MunI CAATTG 3 cut(s) 975, 2642, 2668
Mva1269I GAATGC 3 cut(s) 1221, 1284, 2382
MvaI CCWGG 3 cut(s) 914, 927, 2022
MvnI CGCG 5 cut(s) 114, 277, 285, 485, 699
NaeI GCCGGC 1 cut(s) 2018
NciI CCSGG 1 cut(s) 3200
NdeI CATATG 2 cut(s) 2123, 3136
NdeII GATC 9 cut(s) 199, 628, 1037, 1369, 1483, 1525, 1589, 2197, 3024
NgoMIV GCCGGC 1 cut(s) 2016
NheI GCTAGC 1 cut(s) 889
NlaIV GGNNCC 7 cut(s) 130, 296, 582, 1063, 1980, 2166, 2242
NmeAIII GCCGAG 1 cut(s) 284
NmuCI GTSAC 4 cut(s) 115, 1001, 1931, 2444
NsbI TGCGCA 1 cut(s) 1283
NsiI ATGCAT 1 cut(s) 2384
NspI RCATGY 1 cut(s) 3177
NspV TTCGAA 1 cut(s) 2788
OliI CACNNNNGTG 1 cut(s) 3036
PaeR7I CTCGAG 1 cut(s) 2324
PagI TCATGA 1 cut(s) 1317
PciSI GCTCTTC 2 cut(s) 3120, 3222
PcsI WCGNNNNNNNCGW 4 cut(s) 39, 195, 324, 432
PctI GAATGC 3 cut(s) 1221, 1284, 2382
PdiI GCCGGC 1 cut(s) 2018
PflFI GACNNNGTC 2 cut(s) 86, 1597
PleI GAGTC 3 cut(s) 2993, 3068, 3215
PpsI GAGTC 3 cut(s) 2993, 3068, 3215
PshBI ATTAAT 1 cut(s) 3266
PsiI TTATAA 1 cut(s) 873
Psp124BI GAGCTC 3 cut(s) 545, 2029, 2325
Psp1406I AACGTT 1 cut(s) 1242
Psp6I CCWGG 3 cut(s) 912, 925, 2020
PspEI GGTNACC 2 cut(s) 1001, 2444
PspFI CCCAGC 3 cut(s) 1608, 2100, 2951
PspGI CCWGG 3 cut(s) 912, 925, 2020
PspN4I GGNNCC 7 cut(s) 130, 296, 582, 1063, 1980, 2166, 2242
PspPI GGNCC 4 cut(s) 294, 942, 1951, 2374
PspXI VCTCGAGB 1 cut(s) 2324
PsrI GAACNNNNNNTAC 4 cut(s) 2239, 2271, 2597, 2629
PstI CTGCAG 3 cut(s) 1377, 1459, 1929
PstNI CAGNNNCTG 1 cut(s) 2441
PsuI RGATCY 3 cut(s) 1369, 1483, 1525
PsyI GACNNNGTC 2 cut(s) 86, 1597
RsaI GTAC 8 cut(s) 475, 1063, 1498, 1518, 1907, 2518, 2630, 2771
RsaNI GTAC 8 cut(s) 474, 1062, 1497, 1517, 1906, 2517, 2629, 2770
RseI CAYNNNNRTG 4 cut(s) 1896, 2506, 3036, 3068
SacI GAGCTC 3 cut(s) 545, 2029, 2325
SalI GTCGAC 1 cut(s) 47
SapI GCTCTTC 2 cut(s) 3120, 3222
Sau3AI GATC 9 cut(s) 199, 628, 1037, 1369, 1483, 1525, 1589, 2197, 3024
Sau96I GGNCC 4 cut(s) 294, 942, 1951, 2374
SchI GAGTC 3 cut(s) 2994, 3069, 3215
ScrFI CCNGG 4 cut(s) 914, 927, 2022, 3200
SduI GDGCHC 8 cut(s) 340, 545, 1654, 2029, 2107, 2299, 2325, 2515
SfcI CTRYAG 6 cut(s) 1373, 1455, 1563, 1925, 2539, 2904
Sfr274I CTCGAG 1 cut(s) 2324
SfuI TTCGAA 1 cut(s) 2788
SgrAI CRCCGGYG 1 cut(s) 620
SinI GGWCC 1 cut(s) 1951
SlaI CTCGAG 1 cut(s) 2324
SmiMI CAYNNNNRTG 4 cut(s) 1896, 2506, 3036, 3068
SmlI CTYRAG 5 cut(s) 524, 842, 1015, 2324, 3055
SmoI CTYRAG 5 cut(s) 524, 842, 1015, 2324, 3055
SspI AATATT 1 cut(s) 1415
SspMI CTAG 9 cut(s) 333, 440, 890, 920, 1209, 1388, 1812, 2697, 2798
SstI GAGCTC 3 cut(s) 545, 2029, 2325
StyD4I CCNGG 4 cut(s) 912, 925, 2020, 3198
StyI CCWWGG 3 cut(s) 345, 1325, 1342
TaaI ACNGT 7 cut(s) 323, 857, 1007, 1599, 1649, 2432, 2464
TaiI ACGT 6 cut(s) 48, 90, 141, 195, 1245, 1437
TatI WGTACW 1 cut(s) 2769
TauI GCSGC 8 cut(s) 114, 129, 244, 247, 282, 285, 2279, 2441
TseFI GTSAC 4 cut(s) 115, 1001, 1931, 2444
TseI GCWGC 8 cut(s) 507, 510, 893, 2049, 2303, 2416, 2573, 2576
Tsp45I GTSAC 4 cut(s) 115, 1001, 1931, 2444
TspGWI ACGGA 2 cut(s) 254, 580
Tth111I GACNNNGTC 2 cut(s) 86, 1597
Vha464I CTTAAG 1 cut(s) 1015
VneI GTGCAC 1 cut(s) 2295
VpaK11BI GGWCC 1 cut(s) 1951
VspI ATTAAT 1 cut(s) 3266
XagI CCTNNNNNAGG 1 cut(s) 2064
XapI RAATTY 4 cut(s) 826, 1539, 2817, 3073
XbaI TCTAGA 1 cut(s) 1811
XceI RCATGY 1 cut(s) 3177
XcmI CCANNNNNNNNNTGG 1 cut(s) 1507
XhoI CTCGAG 1 cut(s) 2324
XmiI GTMKAC 3 cut(s) 48, 90, 270
XspI CTAG 9 cut(s) 333, 440, 890, 920, 1209, 1388, 1812, 2697, 2798
ZraI GACGTC 1 cut(s) 46
Zsp2I ATGCAT 1 cut(s) 2384
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.