Rmu_sc0003441.1_g000038

Histone-lysine n-methyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003441.1
OG0002114
Physical Location & Seq
Forward (+)
182425 .. 183131
707 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0003441.1_g000038.1.cds

Sequence Viewer

Length: 381 bp
atgcttcagttcttagtttcagaagcttctgatgctaacttggcgcggcgcgtggcggcgcgttggtggcgatctggaggcgagccatacaattacactcctgtagaaattgggagaaaagaacctgaagcaatagctgctgcatccttaaagcgtttgtttgttgagaaccaaccttacttagttggtgggtacagccaacaccaattgttaagcaatccactgcctcccaattgtgttgttggctctaagttcagctctaggcttctgaggctgaaaggttctcaacttgatgctcctaccaatatactttctatggccgagaagtatgagtacatgagggatacttttcgaaaaagactagcgttgggtaagatatag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000785 GO:0001067 GO:0003002 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003824 GO:0005488 GO:0005543 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005737 GO:0005886 GO:0006325 GO:0006355 GO:0006464 GO:0006479 GO:0006807 GO:0006996 GO:0007275 GO:0007389 GO:0008150 GO:0008152 GO:0008168 GO:0008170 GO:0008213 GO:0008276 GO:0008289 GO:0008757 GO:0009653 GO:0009791 GO:0009889 GO:0009908 GO:0009909 GO:0009987 GO:0010093 GO:0010314 GO:0010468 GO:0010556 GO:0016020 GO:0016043 GO:0016278 GO:0016279 GO:0016569 GO:0016570 GO:0016571 GO:0016740 GO:0016741 GO:0018022 GO:0018024 GO:0018193 GO:0018205 GO:0019219 GO:0019222 GO:0019538 GO:0022414 GO:0031323 GO:0031326 GO:0032259 GO:0032501 GO:0032502 GO:0034968 GO:0035091 GO:0036211 GO:0042054 GO:0042800 GO:0043167 GO:0043168 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043412 GO:0043414 GO:0044212 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044427 GO:0044446 GO:0044464 GO:0048367 GO:0048437 GO:0048444 GO:0048449 GO:0048518 GO:0048578 GO:0048580 GO:0048582 GO:0048583 GO:0048584 GO:0048586 GO:0048608 GO:0048646 GO:0048731 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051094 GO:0051171 GO:0051239 GO:0051240 GO:0051252 GO:0051276 GO:0051568 GO:0060255 GO:0061458 GO:0065007 GO:0071704 GO:0071840 GO:0071944 GO:0080090 GO:0090567 GO:0090696 GO:0090697 GO:0090698 GO:0090701 GO:0097159 GO:0099402 GO:0140096 GO:1901363 GO:1901564 GO:1901981 GO:1903506 GO:1905392 GO:1905393 GO:2000026 GO:2000028 GO:2000112 GO:2000241 GO:2000243 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FYRC FYRN PHD_2 PWWP SET zf-HC5HC2H_2

Protein Analysis

126

Amino Acids

14.22

Weight (kDa)

9.81

Isoelectric Point (pI)

52.96

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 3 cut(s) 46, 51, 61
AciI CCGC 2 cut(s) 46, 56
AcoI YGGCCR 1 cut(s) 318
AcuI CTGAAG 1 cut(s) 147
AfaI GTAC 2 cut(s) 194, 335
AluBI AGCT 3 cut(s) 26, 137, 258
AluI AGCT 3 cut(s) 26, 137, 258
AoxI GGCC 1 cut(s) 318
ApeKI GCWGC 2 cut(s) 137, 140
AspLEI GCGC 3 cut(s) 46, 51, 61
AsuII TTCGAA 1 cut(s) 352
BarI GAAGNNNNNNTAC 2 cut(s) 317, 349
BbvI GCAGC 2 cut(s) 124, 127
BciVI GTATCC 1 cut(s) 337
BfaI CTAG 2 cut(s) 261, 362
BfmI CTRYAG 1 cut(s) 102
BfuI GTATCC 1 cut(s) 337
BisI GCNGC 4 cut(s) 47, 57, 138, 141
BlsI GCNGC 4 cut(s) 48, 58, 139, 142
BmsI GCATC 3 cut(s) 22, 152, 283
BpmI CTGGAG 1 cut(s) 96
Bpu14I TTCGAA 1 cut(s) 352
BseGI GGATG 1 cut(s) 143
BseMII CTCAG 1 cut(s) 260
BseXI GCAGC 2 cut(s) 124, 127
Bsh1236I CGCG 3 cut(s) 46, 51, 61
BshFI GGCC 1 cut(s) 320
BsnI GGCC 1 cut(s) 320
Bsp119I TTCGAA 1 cut(s) 352
Bsp143I GATC 1 cut(s) 71
BspACI CCGC 2 cut(s) 46, 56
BspANI GGCC 1 cut(s) 320
BspCNI CTCAG 1 cut(s) 261
BspFNI CGCG 3 cut(s) 46, 51, 61
BspT104I TTCGAA 1 cut(s) 352
BssMI GATC 1 cut(s) 71
BstAPI GCANNNNNTGC 1 cut(s) 137
BstBI TTCGAA 1 cut(s) 352
BstC8I GCNNGC 1 cut(s) 83
BstDEI CTNAG 4 cut(s) 13, 181, 249, 269
BstF5I GGATG 1 cut(s) 143
BstFNI CGCG 3 cut(s) 46, 51, 61
BstHHI GCGC 3 cut(s) 46, 51, 61
BstKTI GATC 1 cut(s) 74
BstMBI GATC 1 cut(s) 71
BstMWI GCNNNNNNNGC 5 cut(s) 32, 41, 67, 137, 271
BstSFI CTRYAG 1 cut(s) 102
BstUI CGCG 3 cut(s) 46, 51, 61
BstV1I GCAGC 2 cut(s) 124, 127
BsuI GTATCC 1 cut(s) 337
BsuRI GGCC 1 cut(s) 320
BtsCI GGATG 1 cut(s) 143
BtsI GCAGTG 1 cut(s) 221
BtsIMutI CAGTG 1 cut(s) 221
Cac8I GCNNGC 1 cut(s) 83
CfoI GCGC 3 cut(s) 46, 51, 61
Csp6I GTAC 2 cut(s) 193, 334
CviAII CATG 1 cut(s) 337
CviJI RGCY 9 cut(s) 26, 85, 137, 198, 246, 258, 265, 274, 320
CviKI_1 RGCY 9 cut(s) 26, 85, 137, 198, 246, 258, 265, 274, 320
CviQI GTAC 2 cut(s) 193, 334
DdeI CTNAG 4 cut(s) 13, 181, 249, 269
DpnI GATC 1 cut(s) 73
DpnII GATC 1 cut(s) 71
EaeI YGGCCR 1 cut(s) 318
Eco57I CTGAAG 1 cut(s) 147
FaeI CATG 1 cut(s) 340
FaiI YATR 6 cut(s) 88, 308, 317, 330, 338, 379
FatI CATG 1 cut(s) 336
Fnu4HI GCNGC 4 cut(s) 47, 57, 138, 141
FokI GGATG 1 cut(s) 130
Fsp4HI GCNGC 4 cut(s) 47, 57, 138, 141
FspBI CTAG 2 cut(s) 261, 362
GlaI GCGC 3 cut(s) 45, 50, 60
GluI GCNGC 4 cut(s) 47, 57, 138, 141
GsuI CTGGAG 1 cut(s) 96
HaeIII GGCC 1 cut(s) 320
HhaI GCGC 3 cut(s) 46, 51, 61
Hin1II CATG 1 cut(s) 340
Hin6I GCGC 3 cut(s) 44, 49, 59
HinP1I GCGC 3 cut(s) 44, 49, 59
HindIII AAGCTT 1 cut(s) 24
Hpy188I TCNGA 3 cut(s) 22, 31, 270
Hpy188III TCNNGA 1 cut(s) 75
HpyCH4V TGCA 1 cut(s) 143
HpyF10VI GCNNNNNNNGC 5 cut(s) 32, 41, 67, 137, 271
HpyF3I CTNAG 4 cut(s) 13, 181, 249, 269
Hsp92II CATG 1 cut(s) 340
HspAI GCGC 3 cut(s) 44, 49, 59
Kzo9I GATC 1 cut(s) 71
LmnI GCTCC 1 cut(s) 301
LpnPI CCDG 3 cut(s) 60, 114, 138
Lsp1109I GCAGC 2 cut(s) 124, 127
LweI GCATC 3 cut(s) 22, 152, 283
MaeI CTAG 2 cut(s) 261, 362
MalI GATC 1 cut(s) 73
MboI GATC 1 cut(s) 71
MfeI CAATTG 2 cut(s) 206, 232
MluCI AATT 4 cut(s) 91, 108, 206, 232
MnlI CCTC 4 cut(s) 71, 237, 264, 333
MseI TTAA 2 cut(s) 149, 212
MteI GCGCNGCGC 1 cut(s) 47
MunI CAATTG 2 cut(s) 206, 232
MvnI CGCG 3 cut(s) 46, 51, 61
MwoI GCNNNNNNNGC 5 cut(s) 32, 41, 67, 137, 271
NdeII GATC 1 cut(s) 71
NlaIII CATG 1 cut(s) 340
NmeAIII GCCGAG 1 cut(s) 346
NspV TTCGAA 1 cut(s) 352
PkrI GCNGC 4 cut(s) 48, 58, 139, 142
PsrI GAACNNNNNNTAC 2 cut(s) 161, 193
RsaI GTAC 2 cut(s) 194, 335
RsaNI GTAC 2 cut(s) 193, 334
SaqAI TTAA 2 cut(s) 149, 212
SatI GCNGC 4 cut(s) 47, 57, 138, 141
Sau3AI GATC 1 cut(s) 71
SetI ASST 6 cut(s) 28, 127, 139, 178, 260, 283
SfaNI GCATC 3 cut(s) 22, 152, 283
SfcI CTRYAG 1 cut(s) 102
SfuI TTCGAA 1 cut(s) 352
Sse9I AATT 4 cut(s) 91, 108, 206, 232
SsiI CCGC 2 cut(s) 46, 56
SspMI CTAG 2 cut(s) 261, 362
TaqI TCGA 1 cut(s) 352
TasI AATT 4 cut(s) 91, 108, 206, 232
TatI WGTACW 1 cut(s) 333
TauI GCSGC 2 cut(s) 49, 59
Tru1I TTAA 2 cut(s) 149, 212
Tru9I TTAA 2 cut(s) 149, 212
TscAI CASTG 1 cut(s) 228
TseI GCWGC 2 cut(s) 137, 140
TspRI CASTG 1 cut(s) 228
XspI CTAG 2 cut(s) 261, 362
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.