Rorug04G0100500

Histone-lysine n-methyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0002114
Physical Location & Seq
Forward (+)
15714380 .. 15714829
450 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0100500.1

Sequence Viewer

Length: 450 bp
ATGGATGCCAATCTCATTACCAAAACATGTAAGGAAACGCCAAGTTACGATCTTTGTGATTCTTCTCCTCAATTAGACCCTTGGAGCTTCGATGCAGATGTCAAAGGGTTAGCCCTATTAATGGTCAATGTTGTTAAGGCTAAGGCAACTAATACTGTAAACCATATCAATGATCTTCTTAAACAGACGTCGGGAGCTCAACCCTTAAGTTCTTGCCTCGATGTATATAATGTAGTTATACAGGCTAAAGTCCCAAAAGCCAGTGAAGCTCTGTCTAAAGGTGACCCTAAGTTTGCAGAGCAAGGCATGAATGATGTTGGCCTGGGGGCAGATTTATGTGAAAATAGTTTTTCGGGCAGCTCATCTCCTCTCACATATTTGAACAAAACTGTTAGGGATGTTGCGGATGTGGCTTCAGCAATTGTTCAGCATTTTGATATGCATATGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000785 GO:0001067 GO:0003002 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003824 GO:0005488 GO:0005543 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005737 GO:0005886 GO:0006325 GO:0006355 GO:0006464 GO:0006479 GO:0006807 GO:0006996 GO:0007275 GO:0007389 GO:0008150 GO:0008152 GO:0008168 GO:0008170 GO:0008213 GO:0008276 GO:0008289 GO:0008757 GO:0009653 GO:0009791 GO:0009889 GO:0009908 GO:0009909 GO:0009987 GO:0010093 GO:0010314 GO:0010468 GO:0010556 GO:0016020 GO:0016043 GO:0016278 GO:0016279 GO:0016569 GO:0016570 GO:0016571 GO:0016740 GO:0016741 GO:0018022 GO:0018024 GO:0018193 GO:0018205 GO:0019219 GO:0019222 GO:0019538 GO:0022414 GO:0031323 GO:0031326 GO:0032259 GO:0032501 GO:0032502 GO:0034968 GO:0035091 GO:0036211 GO:0042054 GO:0042800 GO:0043167 GO:0043168 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043412 GO:0043414 GO:0044212 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044427 GO:0044446 GO:0044464 GO:0048367 GO:0048437 GO:0048444 GO:0048449 GO:0048518 GO:0048578 GO:0048580 GO:0048582 GO:0048583 GO:0048584 GO:0048586 GO:0048608 GO:0048646 GO:0048731 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051094 GO:0051171 GO:0051239 GO:0051240 GO:0051252 GO:0051276 GO:0051568 GO:0060255 GO:0061458 GO:0065007 GO:0071704 GO:0071840 GO:0071944 GO:0080090 GO:0090567 GO:0090696 GO:0090697 GO:0090698 GO:0090701 GO:0097159 GO:0099402 GO:0140096 GO:1901363 GO:1901564 GO:1901981 GO:1903506 GO:1905392 GO:1905393 GO:2000026 GO:2000028 GO:2000112 GO:2000241 GO:2000243 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FYRC FYRN PHD_2 PWWP SET zf-HC5HC2H_2

Protein Analysis

149

Amino Acids

15.98

Weight (kDa)

4.83

Isoelectric Point (pI)

38.41

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PMEI PF04043 4 - 141 1.3e-15 Plant invertase/pectin methylesterase inhibitor
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 191
AciI CCGC 1 cut(s) 404
AcuI CTGAAG 1 cut(s) 399
AcyI GRCGYC 1 cut(s) 188
AfiI CCNNNNNNNGG 1 cut(s) 121
AflII CTTAAG 1 cut(s) 205
AflIII ACRYGT 1 cut(s) 26
AgsI TTSAA 1 cut(s) 382
AjnI CCWGG 1 cut(s) 321
AluBI AGCT 4 cut(s) 87, 197, 269, 360
AluI AGCT 4 cut(s) 87, 197, 269, 360
Alw21I GWGCWC 1 cut(s) 199
AoxI GGCC 1 cut(s) 319
ApeKI GCWGC 1 cut(s) 357
ArsI GACNNNNNNTTYG 2 cut(s) 275, 307
AseI ATTAAT 1 cut(s) 119
AsuHPI GGTGA 1 cut(s) 293
BanII GRGCYC 1 cut(s) 199
Bbv12I GWGCWC 1 cut(s) 199
BbvI GCAGC 1 cut(s) 369
BciT130I CCWGG 1 cut(s) 323
BfrI CTTAAG 1 cut(s) 205
BisI GCNGC 1 cut(s) 358
BlsI GCNGC 1 cut(s) 359
Bme1390I CCNGG 1 cut(s) 323
BmrFI CCNGG 1 cut(s) 323
BmsI GCATC 1 cut(s) 82
Bpu10I CCTNAGC 1 cut(s) 141
BsaBI GATNNNNATC 1 cut(s) 9
BsaHI GRCGYC 1 cut(s) 188
BsaJI CCNNGG 2 cut(s) 80, 322
Bsc4I CCNNNNNNNGG 1 cut(s) 121
Bse1I ACTGG 1 cut(s) 261
Bse8I GATNNNNATC 1 cut(s) 9
BseBI CCWGG 1 cut(s) 323
BseDI CCNNGG 2 cut(s) 80, 322
BseGI GGATG 3 cut(s) 10, 403, 412
BseJI GATNNNNATC 1 cut(s) 9
BseLI CCNNNNNNNGG 1 cut(s) 121
BseNI ACTGG 1 cut(s) 261
BseRI GAGGAG 2 cut(s) 57, 357
BseXI GCAGC 1 cut(s) 369
BshFI GGCC 1 cut(s) 321
BsiHKAI GWGCWC 1 cut(s) 199
BslFI GGGAC 1 cut(s) 236
BslI CCNNNNNNNGG 1 cut(s) 121
BsmFI GGGAC 1 cut(s) 236
BsnI GGCC 1 cut(s) 321
Bsp1286I GDGCHC 1 cut(s) 199
Bsp143I GATC 2 cut(s) 49, 172
BspACI CCGC 1 cut(s) 404
BspANI GGCC 1 cut(s) 321
BspTI CTTAAG 1 cut(s) 205
BsrI ACTGG 1 cut(s) 261
BssECI CCNNGG 2 cut(s) 80, 322
BssMI GATC 2 cut(s) 49, 172
BssNI GRCGYC 1 cut(s) 188
BssT1I CCWWGG 1 cut(s) 80
Bst2UI CCWGG 1 cut(s) 323
Bst4CI ACNGT 2 cut(s) 157, 391
BstACI GRCGYC 1 cut(s) 188
BstAFI CTTAAG 1 cut(s) 205
BstDEI CTNAG 2 cut(s) 141, 288
BstEII GGTNACC 1 cut(s) 281
BstF5I GGATG 3 cut(s) 10, 403, 412
BstKTI GATC 2 cut(s) 52, 175
BstMBI GATC 2 cut(s) 49, 172
BstMWI GCNNNNNNNGC 2 cut(s) 266, 410
BstNI CCWGG 1 cut(s) 323
BstNSI RCATGY 1 cut(s) 30
BstPI GGTNACC 1 cut(s) 281
BstSCI CCNGG 1 cut(s) 321
BstV1I GCAGC 1 cut(s) 369
BsuRI GGCC 1 cut(s) 321
BtsCI GGATG 3 cut(s) 10, 403, 412
BtsIMutI CAGTG 1 cut(s) 268
CviAII CATG 2 cut(s) 27, 307
DdeI CTNAG 2 cut(s) 141, 288
DpnI GATC 2 cut(s) 51, 174
DpnII GATC 2 cut(s) 49, 172
Ecl136II GAGCTC 1 cut(s) 197
Eco130I CCWWGG 1 cut(s) 80
Eco24I GRGCYC 1 cut(s) 199
Eco53kI GAGCTC 1 cut(s) 197
Eco57I CTGAAG 1 cut(s) 399
Eco91I GGTNACC 1 cut(s) 281
EcoICRI GAGCTC 1 cut(s) 197
EcoO65I GGTNACC 1 cut(s) 281
EcoRII CCWGG 1 cut(s) 321
EcoT14I CCWWGG 1 cut(s) 80
EcoT22I ATGCAT 1 cut(s) 444
EcoT38I GRGCYC 1 cut(s) 199
ErhI CCWWGG 1 cut(s) 80
FaeI CATG 2 cut(s) 30, 310
FaqI GGGAC 1 cut(s) 236
FatI CATG 2 cut(s) 26, 306
FauNDI CATATG 1 cut(s) 444
Fnu4HI GCNGC 1 cut(s) 358
FokI GGATG 3 cut(s) 17, 410, 419
FriOI GRGCYC 1 cut(s) 199
Fsp4HI GCNGC 1 cut(s) 358
GluI GCNGC 1 cut(s) 358
HaeIII GGCC 1 cut(s) 321
Hin1I GRCGYC 1 cut(s) 188
Hin1II CATG 2 cut(s) 30, 310
HinfI GANTC 1 cut(s) 59
HphI GGTGA 1 cut(s) 293
Hpy166II GTNNAC 1 cut(s) 160
Hpy188III TCNNGA 1 cut(s) 192
Hpy8I GTNNAC 1 cut(s) 160
Hpy99I CGWCG 1 cut(s) 193
HpyCH4III ACNGT 2 cut(s) 157, 391
HpyCH4IV ACGT 1 cut(s) 188
HpyCH4V TGCA 3 cut(s) 95, 296, 442
HpyF10VI GCNNNNNNNGC 2 cut(s) 266, 410
HpyF3I CTNAG 2 cut(s) 141, 288
HpySE526I ACGT 1 cut(s) 188
Hsp92I GRCGYC 1 cut(s) 188
Hsp92II CATG 2 cut(s) 30, 310
Kzo9I GATC 2 cut(s) 49, 172
LmnI GCTCC 2 cut(s) 84, 194
LpnPI CCDG 4 cut(s) 227, 274, 308, 335
Lsp1109I GCAGC 1 cut(s) 369
LweI GCATC 1 cut(s) 82
MaeII ACGT 1 cut(s) 188
MaeIII GTNAC 2 cut(s) 44, 281
MalI GATC 2 cut(s) 51, 174
MboI GATC 2 cut(s) 49, 172
MboII GAAGA 2 cut(s) 54, 167
MfeI CAATTG 1 cut(s) 420
MhlI GDGCHC 1 cut(s) 199
MluCI AATT 2 cut(s) 71, 420
MnlI CCTC 3 cut(s) 78, 227, 378
Mph1103I ATGCAT 1 cut(s) 444
MseI TTAA 4 cut(s) 119, 135, 180, 206
MslI CAYNNNNRTG 1 cut(s) 168
MspCI CTTAAG 1 cut(s) 205
MspR9I CCNGG 1 cut(s) 323
MunI CAATTG 1 cut(s) 420
MvaI CCWGG 1 cut(s) 323
MwoI GCNNNNNNNGC 2 cut(s) 266, 410
NdeI CATATG 1 cut(s) 444
NdeII GATC 2 cut(s) 49, 172
NlaIII CATG 2 cut(s) 30, 310
NmuCI GTSAC 1 cut(s) 281
NsiI ATGCAT 1 cut(s) 444
NspI RCATGY 1 cut(s) 30
PciI ACATGT 1 cut(s) 26
PfeI GAWTC 1 cut(s) 59
PkrI GCNGC 1 cut(s) 359
PscI ACATGT 1 cut(s) 26
PshBI ATTAAT 1 cut(s) 119
Psp124BI GAGCTC 1 cut(s) 199
Psp6I CCWGG 1 cut(s) 321
PspEI GGTNACC 1 cut(s) 281
PspGI CCWGG 1 cut(s) 321
RseI CAYNNNNRTG 1 cut(s) 168
SacI GAGCTC 1 cut(s) 199
SaqAI TTAA 4 cut(s) 119, 135, 180, 206
SatI GCNGC 1 cut(s) 358
Sau3AI GATC 2 cut(s) 49, 172
ScrFI CCNGG 1 cut(s) 323
SduI GDGCHC 1 cut(s) 199
SetI ASST 6 cut(s) 89, 191, 199, 271, 283, 362
SfaNI GCATC 1 cut(s) 82
SmiMI CAYNNNNRTG 1 cut(s) 168
SmlI CTYRAG 1 cut(s) 205
SmoI CTYRAG 1 cut(s) 205
Sse9I AATT 2 cut(s) 71, 420
SsiI CCGC 1 cut(s) 404
SstI GAGCTC 1 cut(s) 199
StyD4I CCNGG 1 cut(s) 321
StyI CCWWGG 1 cut(s) 80
TaaI ACNGT 2 cut(s) 157, 391
TaiI ACGT 1 cut(s) 191
TaqI TCGA 2 cut(s) 90, 219
TasI AATT 2 cut(s) 71, 420
TfiI GAWTC 1 cut(s) 59
Tru1I TTAA 4 cut(s) 119, 135, 180, 206
Tru9I TTAA 4 cut(s) 119, 135, 180, 206
TscAI CASTG 1 cut(s) 268
TseFI GTSAC 1 cut(s) 281
TseI GCWGC 1 cut(s) 357
Tsp45I GTSAC 1 cut(s) 281
TspDTI ATGAA 1 cut(s) 323
TspRI CASTG 1 cut(s) 268
Vha464I CTTAAG 1 cut(s) 205
VspI ATTAAT 1 cut(s) 119
XceI RCATGY 1 cut(s) 30
ZraI GACGTC 1 cut(s) 189
Zsp2I ATGCAT 1 cut(s) 444
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.