Rmu_sc0000706.1_g000028

Histone-lysine n-methyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000706.1
OG0002114
Physical Location & Seq
Forward (+)
115061 .. 115767
707 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000706.1_g000028.1.cds

Sequence Viewer

Length: 381 bp
atgcttcagttcccagcttcagaggcttctgatgctatcttgacgcggcgcgtggtggcgcatcggtggcgatctggaggcgagccatacaattacactcctgtagaaattgggagaaaagaacctgaagcaatagctgctgcatccttaaagcgtttgtttgttgagaaccaaccttacttagttggtgggtacagccaacaccaattgtcaagcaatccactgcctcccaattgtgttgttggctctaagttcagctctaggcttctgaggctgaaaggttctcaacttgatgctcctaccaatatactttctatggccgagaagtatgagtacatgagggatacttttcgaaaaagactagcgttgggtaagatatag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000785 GO:0001067 GO:0003002 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003824 GO:0005488 GO:0005543 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005737 GO:0005886 GO:0006325 GO:0006355 GO:0006464 GO:0006479 GO:0006807 GO:0006996 GO:0007275 GO:0007389 GO:0008150 GO:0008152 GO:0008168 GO:0008170 GO:0008213 GO:0008276 GO:0008289 GO:0008757 GO:0009653 GO:0009791 GO:0009889 GO:0009908 GO:0009909 GO:0009987 GO:0010093 GO:0010314 GO:0010468 GO:0010556 GO:0016020 GO:0016043 GO:0016278 GO:0016279 GO:0016569 GO:0016570 GO:0016571 GO:0016740 GO:0016741 GO:0018022 GO:0018024 GO:0018193 GO:0018205 GO:0019219 GO:0019222 GO:0019538 GO:0022414 GO:0031323 GO:0031326 GO:0032259 GO:0032501 GO:0032502 GO:0034968 GO:0035091 GO:0036211 GO:0042054 GO:0042800 GO:0043167 GO:0043168 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043412 GO:0043414 GO:0044212 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044427 GO:0044446 GO:0044464 GO:0048367 GO:0048437 GO:0048444 GO:0048449 GO:0048518 GO:0048578 GO:0048580 GO:0048582 GO:0048583 GO:0048584 GO:0048586 GO:0048608 GO:0048646 GO:0048731 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051094 GO:0051171 GO:0051239 GO:0051240 GO:0051252 GO:0051276 GO:0051568 GO:0060255 GO:0061458 GO:0065007 GO:0071704 GO:0071840 GO:0071944 GO:0080090 GO:0090567 GO:0090696 GO:0090697 GO:0090698 GO:0090701 GO:0097159 GO:0099402 GO:0140096 GO:1901363 GO:1901564 GO:1901981 GO:1903506 GO:1905392 GO:1905393 GO:2000026 GO:2000028 GO:2000112 GO:2000241 GO:2000243 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FYRC FYRN PHD_2 PWWP SET zf-HC5HC2H_2

Protein Analysis

126

Amino Acids

14.15

Weight (kDa)

9.81

Isoelectric Point (pI)

58.4

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 46, 51
AciI CCGC 1 cut(s) 46
AcoI YGGCCR 1 cut(s) 318
AcuI CTGAAG 1 cut(s) 147
AfaI GTAC 2 cut(s) 194, 335
AluBI AGCT 3 cut(s) 17, 137, 258
AluI AGCT 3 cut(s) 17, 137, 258
AoxI GGCC 1 cut(s) 318
ApeKI GCWGC 2 cut(s) 137, 140
AspLEI GCGC 2 cut(s) 51, 61
AsuII TTCGAA 1 cut(s) 352
BarI GAAGNNNNNNTAC 2 cut(s) 317, 349
BbvI GCAGC 2 cut(s) 124, 127
BciVI GTATCC 1 cut(s) 337
BfaI CTAG 2 cut(s) 261, 362
BfmI CTRYAG 1 cut(s) 102
BfuI GTATCC 1 cut(s) 337
BisI GCNGC 3 cut(s) 47, 138, 141
BlsI GCNGC 3 cut(s) 48, 139, 142
BmsI GCATC 4 cut(s) 22, 70, 152, 283
BpmI CTGGAG 1 cut(s) 96
Bpu14I TTCGAA 1 cut(s) 352
BseGI GGATG 1 cut(s) 143
BseMII CTCAG 1 cut(s) 260
BseXI GCAGC 2 cut(s) 124, 127
BseYI CCCAGC 1 cut(s) 13
Bsh1236I CGCG 2 cut(s) 46, 51
BshFI GGCC 1 cut(s) 320
BsnI GGCC 1 cut(s) 320
Bsp119I TTCGAA 1 cut(s) 352
Bsp143I GATC 1 cut(s) 71
BspACI CCGC 1 cut(s) 46
BspANI GGCC 1 cut(s) 320
BspCNI CTCAG 1 cut(s) 261
BspFNI CGCG 2 cut(s) 46, 51
BspT104I TTCGAA 1 cut(s) 352
BssMI GATC 1 cut(s) 71
BstAPI GCANNNNNTGC 1 cut(s) 137
BstBI TTCGAA 1 cut(s) 352
BstC8I GCNNGC 1 cut(s) 83
BstDEI CTNAG 3 cut(s) 181, 249, 269
BstF5I GGATG 1 cut(s) 143
BstFNI CGCG 2 cut(s) 46, 51
BstHHI GCGC 2 cut(s) 51, 61
BstKTI GATC 1 cut(s) 74
BstMBI GATC 1 cut(s) 71
BstMWI GCNNNNNNNGC 5 cut(s) 23, 32, 67, 137, 271
BstSFI CTRYAG 1 cut(s) 102
BstUI CGCG 2 cut(s) 46, 51
BstV1I GCAGC 2 cut(s) 124, 127
BsuI GTATCC 1 cut(s) 337
BsuRI GGCC 1 cut(s) 320
BtsCI GGATG 1 cut(s) 143
BtsI GCAGTG 1 cut(s) 221
BtsIMutI CAGTG 1 cut(s) 221
Cac8I GCNNGC 1 cut(s) 83
CfoI GCGC 2 cut(s) 51, 61
CseI GACGC 1 cut(s) 52
Csp6I GTAC 2 cut(s) 193, 334
CviAII CATG 1 cut(s) 337
CviQI GTAC 2 cut(s) 193, 334
DdeI CTNAG 3 cut(s) 181, 249, 269
DpnI GATC 1 cut(s) 73
DpnII GATC 1 cut(s) 71
EaeI YGGCCR 1 cut(s) 318
Eco57I CTGAAG 1 cut(s) 147
FaeI CATG 1 cut(s) 340
FaiI YATR 6 cut(s) 88, 308, 317, 330, 338, 379
FatI CATG 1 cut(s) 336
Fnu4HI GCNGC 3 cut(s) 47, 138, 141
FokI GGATG 1 cut(s) 130
Fsp4HI GCNGC 3 cut(s) 47, 138, 141
FspBI CTAG 2 cut(s) 261, 362
GlaI GCGC 2 cut(s) 50, 60
GluI GCNGC 3 cut(s) 47, 138, 141
GsaI CCCAGC 1 cut(s) 17
GsuI CTGGAG 1 cut(s) 96
HaeIII GGCC 1 cut(s) 320
HgaI GACGC 1 cut(s) 52
HhaI GCGC 2 cut(s) 51, 61
Hin1II CATG 1 cut(s) 340
Hin6I GCGC 2 cut(s) 49, 59
HinP1I GCGC 2 cut(s) 49, 59
Hpy188I TCNGA 3 cut(s) 22, 31, 270
Hpy188III TCNNGA 2 cut(s) 40, 75
HpyCH4V TGCA 1 cut(s) 143
HpyF10VI GCNNNNNNNGC 5 cut(s) 23, 32, 67, 137, 271
HpyF3I CTNAG 3 cut(s) 181, 249, 269
Hsp92II CATG 1 cut(s) 340
HspAI GCGC 2 cut(s) 49, 59
Kzo9I GATC 1 cut(s) 71
LmnI GCTCC 1 cut(s) 301
LpnPI CCDG 4 cut(s) 27, 60, 114, 138
Lsp1109I GCAGC 2 cut(s) 124, 127
LweI GCATC 4 cut(s) 22, 70, 152, 283
MaeI CTAG 2 cut(s) 261, 362
MalI GATC 1 cut(s) 73
MboI GATC 1 cut(s) 71
MfeI CAATTG 2 cut(s) 206, 232
MluCI AATT 4 cut(s) 91, 108, 206, 232
MnlI CCTC 5 cut(s) 16, 71, 237, 264, 333
MseI TTAA 1 cut(s) 149
MunI CAATTG 2 cut(s) 206, 232
MvnI CGCG 2 cut(s) 46, 51
MwoI GCNNNNNNNGC 5 cut(s) 23, 32, 67, 137, 271
NdeII GATC 1 cut(s) 71
NlaIII CATG 1 cut(s) 340
NmeAIII GCCGAG 1 cut(s) 346
NspV TTCGAA 1 cut(s) 352
PkrI GCNGC 3 cut(s) 48, 139, 142
PspFI CCCAGC 1 cut(s) 13
PsrI GAACNNNNNNTAC 2 cut(s) 161, 193
RsaI GTAC 2 cut(s) 194, 335
RsaNI GTAC 2 cut(s) 193, 334
SaqAI TTAA 1 cut(s) 149
SatI GCNGC 3 cut(s) 47, 138, 141
Sau3AI GATC 1 cut(s) 71
SetI ASST 6 cut(s) 19, 127, 139, 178, 260, 283
SfaNI GCATC 4 cut(s) 22, 70, 152, 283
SfcI CTRYAG 1 cut(s) 102
SfuI TTCGAA 1 cut(s) 352
Sse9I AATT 4 cut(s) 91, 108, 206, 232
SsiI CCGC 1 cut(s) 46
SspMI CTAG 2 cut(s) 261, 362
TaqI TCGA 1 cut(s) 352
TasI AATT 4 cut(s) 91, 108, 206, 232
TatI WGTACW 1 cut(s) 333
TauI GCSGC 1 cut(s) 49
Tru1I TTAA 1 cut(s) 149
Tru9I TTAA 1 cut(s) 149
TscAI CASTG 1 cut(s) 228
TseI GCWGC 2 cut(s) 137, 140
TspRI CASTG 1 cut(s) 228
XspI CTAG 2 cut(s) 261, 362
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.