Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0002114

Physical Location & Seq

Genomic Coordinates Reverse (-)

64710440 .. 64711999

Gene Structure 1560 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00045570.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 411 bp

ATGGTACACAGCAAGACTTTAAGAGCAGTTAGACCACATGAAGCTGGAAATATTATAATTTCAATGGATTCTCCCCATAATGTTATCAAGGAAGAAATCCATCCCAAACCTAATGTGGTTTTAGGGCAGAACCATACAATTACTCCTGTAGAAATTGGGAGAAAAGAACCTGAAGCAATAGCTGCTACATCCTTAAAGCGTTTGTTTGTTGAGAACCAACCTTACTTAGTTGGTGGGTACAACCAACACCAATTGTCAAGCAATCCACTGCCTCCCAATTGTGTTGTTGGCTCTAAGCTCAGTTCTAGGCTTCTGAGGCTGAAAGCTTCTCAACTTGATGCTCCTACCAATATACTTTCTATGGCTGAGAAGTACAAGTACATGAGGGATACTTTTACTATTAGAATATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000785 GO:0001067 GO:0003002 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003824 GO:0005488 GO:0005543 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005737 GO:0005886 GO:0006325 GO:0006355 GO:0006464 GO:0006479 GO:0006807 GO:0006996 GO:0007275 GO:0007389 GO:0008150 GO:0008152 GO:0008168 GO:0008170 GO:0008213 GO:0008276 GO:0008289 GO:0008757 GO:0009653 GO:0009791 GO:0009889 GO:0009908 GO:0009909 GO:0009987 GO:0010093 GO:0010314 GO:0010468 GO:0010556 GO:0016020 GO:0016043 GO:0016278 GO:0016279 GO:0016569 GO:0016570 GO:0016571 GO:0016740 GO:0016741 GO:0018022 GO:0018024 GO:0018193 GO:0018205 GO:0019219 GO:0019222 GO:0019538 GO:0022414 GO:0031323 GO:0031326 GO:0032259 GO:0032501 GO:0032502 GO:0034968 GO:0035091 GO:0036211 GO:0042054 GO:0042800 GO:0043167 GO:0043168 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043412 GO:0043414 GO:0044212 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044427 GO:0044446 GO:0044464 GO:0048367 GO:0048437 GO:0048444 GO:0048449 GO:0048518 GO:0048578 GO:0048580 GO:0048582 GO:0048583 GO:0048584 GO:0048586 GO:0048608 GO:0048646 GO:0048731 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051094 GO:0051171 GO:0051239 GO:0051240 GO:0051252 GO:0051276 GO:0051568 GO:0060255 GO:0061458 GO:0065007 GO:0071704 GO:0071840 GO:0071944 GO:0080090 GO:0090567 GO:0090696 GO:0090697 GO:0090698 GO:0090701 GO:0097159 GO:0099402 GO:0140096 GO:1901363 GO:1901564 GO:1901981 GO:1903506 GO:1905392 GO:1905393 GO:2000026 GO:2000028 GO:2000112 GO:2000241 GO:2000243 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FYRC FYRN PHD_2 PWWP SET zf-HC5HC2H_2

Protein Analysis

136

Amino Acids

15.22

Weight (kDa)

9.67

Isoelectric Point (pI)

47.2

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002114)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G05830 AT1G05830 AT1G05830 AT1G05830 AT2G31650
fragaria_vesca	FvH4_4g12210 FvH4_4g12210 FvH4_4g12210 FvH4_4g12210 FvH4_4g12210 FvH4_4g12210 FvH4_4g12210 FvH4_4g12210 FvH4_4g12210 FvH4_4g12210 FvH4_4g12210 FvH4_4g12210 FvH4_4g12210 FvH4_4g12210
malus_domestica	MD04G1028500.v1.1 MD04G1028600.v1.1 MD13G1278800.v1.1 MD13G1279000.v1.1
prunus_persica	Prupe.1G177800_v2.0.a1 Prupe.1G177800_v2.0.a1 Prupe.1G177800_v2.0.a1 Prupe.1G177800_v2.0.a1
pyrus_communis	pycom13g29460
rosa_chinensis	RchiOBHm_Chr4g0409981
rosa_laevigata	RLG00000008508
rosa_multiflora	Rmu_sc0000706.1_g000028 Rmu_sc0003441.1_g000038
rosa_roxburghii	Rroxscaffold_1G00045570 Rroxscaffold_5G00354500 Rroxscaffold_7G00212600
rosa_rugosa	Rorug04G0100200 Rorug04G0100300 Rorug04G0100400 Rorug04G0100500
rosa_samantha	Rh4AG158800 Rh4BG158200 Rh4CG169800 Rh4DG153800
rosa_wichuraiana	Rw4G013120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	56
AcuI	CTGAAG	1 cut(s)	192
AfaI	GTAC	4 cut(s)	6, 239, 374, 380
AgsI	TTSAA	1 cut(s)	63
AluBI	AGCT	4 cut(s)	44, 182, 298, 326
AluI	AGCT	4 cut(s)	44, 182, 298, 326
ApeKI	GCWGC	1 cut(s)	182
BarI	GAAGNNNNNNTAC	2 cut(s)	362, 394
BbvI	GCAGC	1 cut(s)	169
BccI	CCATC	1 cut(s)	108
BciVI	GTATCC	1 cut(s)	382
BfaI	CTAG	1 cut(s)	306
BfmI	CTRYAG	1 cut(s)	147
BfuI	GTATCC	1 cut(s)	382
BisI	GCNGC	1 cut(s)	183
BlsI	GCNGC	1 cut(s)	184
BmsI	GCATC	1 cut(s)	328
BsaXI	ACNNNNNCTCC	2 cut(s)	127, 157
BseGI	GGATG	2 cut(s)	100, 188
BseMII	CTCAG	3 cut(s)	305, 313, 357
BseXI	GCAGC	1 cut(s)	169
BspCNI	CTCAG	3 cut(s)	306, 312, 358
BstAPI	GCANNNNNTGC	1 cut(s)	182
BstDEI	CTNAG	5 cut(s)	226, 294, 299, 314, 366
BstF5I	GGATG	2 cut(s)	100, 188
BstMWI	GCNNNNNNNGC	2 cut(s)	182, 316
BstSFI	CTRYAG	1 cut(s)	147
BstV1I	GCAGC	1 cut(s)	169
BsuI	GTATCC	1 cut(s)	382
BtsCI	GGATG	2 cut(s)	100, 188
BtsI	GCAGTG	1 cut(s)	266
BtsIMutI	CAGTG	1 cut(s)	266
Csp6I	GTAC	4 cut(s)	5, 238, 373, 379
CviAII	CATG	2 cut(s)	38, 382
CviJI	RGCY	8 cut(s)	44, 182, 291, 298, 310, 319, 326, 365
CviKI_1	RGCY	8 cut(s)	44, 182, 291, 298, 310, 319, 326, 365
CviQI	GTAC	4 cut(s)	5, 238, 373, 379
DdeI	CTNAG	5 cut(s)	226, 294, 299, 314, 366
Eco57I	CTGAAG	1 cut(s)	192
FaeI	CATG	2 cut(s)	41, 385
FaiI	YATR	8 cut(s)	39, 56, 78, 135, 353, 362, 383, 409
FatI	CATG	2 cut(s)	37, 381
Fnu4HI	GCNGC	1 cut(s)	183
FokI	GGATG	2 cut(s)	87, 175
Fsp4HI	GCNGC	1 cut(s)	183
FspBI	CTAG	1 cut(s)	306
GluI	GCNGC	1 cut(s)	183
Hin1II	CATG	2 cut(s)	41, 385
HindIII	AAGCTT	1 cut(s)	324
HinfI	GANTC	1 cut(s)	68
Hpy166II	GTNNAC	1 cut(s)	7
Hpy188I	TCNGA	1 cut(s)	315
Hpy8I	GTNNAC	1 cut(s)	7
HpyF10VI	GCNNNNNNNGC	2 cut(s)	182, 316
HpyF3I	CTNAG	5 cut(s)	226, 294, 299, 314, 366
Hsp92II	CATG	2 cut(s)	41, 385
LmnI	GCTCC	1 cut(s)	346
LpnPI	CCDG	3 cut(s)	30, 159, 183
Lsp1109I	GCAGC	1 cut(s)	169
LweI	GCATC	1 cut(s)	328
MaeI	CTAG	1 cut(s)	306
MboII	GAAGA	1 cut(s)	104
MfeI	CAATTG	2 cut(s)	251, 277
MluCI	AATT	5 cut(s)	57, 138, 153, 251, 277
MnlI	CCTC	3 cut(s)	282, 309, 378
MseI	TTAA	2 cut(s)	20, 194
MunI	CAATTG	2 cut(s)	251, 277
MwoI	GCNNNNNNNGC	2 cut(s)	182, 316
NlaIII	CATG	2 cut(s)	41, 385
PfeI	GAWTC	1 cut(s)	68
PkrI	GCNGC	1 cut(s)	184
PsiI	TTATAA	1 cut(s)	56
PsrI	GAACNNNNNNTAC	2 cut(s)	206, 238
RsaI	GTAC	4 cut(s)	6, 239, 374, 380
RsaNI	GTAC	4 cut(s)	5, 238, 373, 379
SaqAI	TTAA	2 cut(s)	20, 194
SatI	GCNGC	1 cut(s)	183
SetI	ASST	7 cut(s)	46, 112, 172, 184, 223, 300, 328
SfaNI	GCATC	1 cut(s)	328
SfcI	CTRYAG	1 cut(s)	147
Sse9I	AATT	5 cut(s)	57, 138, 153, 251, 277
SspI	AATATT	1 cut(s)	52
SspMI	CTAG	1 cut(s)	306
TasI	AATT	5 cut(s)	57, 138, 153, 251, 277
TatI	WGTACW	2 cut(s)	372, 378
TfiI	GAWTC	1 cut(s)	68
Tru1I	TTAA	2 cut(s)	20, 194
Tru9I	TTAA	2 cut(s)	20, 194
TscAI	CASTG	1 cut(s)	273
TseI	GCWGC	1 cut(s)	182
TspDTI	ATGAA	1 cut(s)	54
TspRI	CASTG	1 cut(s)	273
XcmI	CCANNNNNNNNNTGG	1 cut(s)	112
XspI	CTAG	1 cut(s)	306

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.