Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0002114

Physical Location & Seq

Genomic Coordinates Reverse (-)

15711951 .. 15712265

Gene Structure 315 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0100400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 315 bp

ATGGTTGGTGAGGTTGAGCCTAAGGCGTTTGATGCCATTGCCAAAATCAATCAGCTACGTAACCAAAGCCCTAATAACAAACCCTTAAGCGATTGTCAGGAATATTACGTTGCAGTTGTTCGAAATAATGTACCCCAAGCCACTGAAGCAATTGATAAAAGTGATAGTGGCAAGGCGGAGCAACTCATGAATGACGTTGTGTGTAAGGCTGATTCATGCGAAAAGGGTAAAAAGAGCGGCTCTCCTTTGATTAGCTTGAACAATGTCGTAAAAGATGTTTCGTCTGTGGCTGCAGCAATATCAAGATTGATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000785 GO:0001067 GO:0003002 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003824 GO:0005488 GO:0005543 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005737 GO:0005886 GO:0006325 GO:0006355 GO:0006464 GO:0006479 GO:0006807 GO:0006996 GO:0007275 GO:0007389 GO:0008150 GO:0008152 GO:0008168 GO:0008170 GO:0008213 GO:0008276 GO:0008289 GO:0008757 GO:0009653 GO:0009791 GO:0009889 GO:0009908 GO:0009909 GO:0009987 GO:0010093 GO:0010314 GO:0010468 GO:0010556 GO:0016020 GO:0016043 GO:0016278 GO:0016279 GO:0016569 GO:0016570 GO:0016571 GO:0016740 GO:0016741 GO:0018022 GO:0018024 GO:0018193 GO:0018205 GO:0019219 GO:0019222 GO:0019538 GO:0022414 GO:0031323 GO:0031326 GO:0032259 GO:0032501 GO:0032502 GO:0034968 GO:0035091 GO:0036211 GO:0042054 GO:0042800 GO:0043167 GO:0043168 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043412 GO:0043414 GO:0044212 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044427 GO:0044446 GO:0044464 GO:0048367 GO:0048437 GO:0048444 GO:0048449 GO:0048518 GO:0048578 GO:0048580 GO:0048582 GO:0048583 GO:0048584 GO:0048586 GO:0048608 GO:0048646 GO:0048731 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051094 GO:0051171 GO:0051239 GO:0051240 GO:0051252 GO:0051276 GO:0051568 GO:0060255 GO:0061458 GO:0065007 GO:0071704 GO:0071840 GO:0071944 GO:0080090 GO:0090567 GO:0090696 GO:0090697 GO:0090698 GO:0090701 GO:0097159 GO:0099402 GO:0140096 GO:1901363 GO:1901564 GO:1901981 GO:1903506 GO:1905392 GO:1905393 GO:2000026 GO:2000028 GO:2000112 GO:2000241 GO:2000243 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FYRC FYRN PHD_2 PWWP SET zf-HC5HC2H_2

Protein Analysis

104

Amino Acids

11.16

Weight (kDa)

6.22

Isoelectric Point (pI)

43.49

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PMEI	PF04043	10 - 100	9.4e-07	Plant invertase/pectin methylesterase inhibitor

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002114)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G05830 AT1G05830 AT1G05830 AT1G05830 AT2G31650
fragaria_vesca	FvH4_4g12210 FvH4_4g12210 FvH4_4g12210 FvH4_4g12210 FvH4_4g12210 FvH4_4g12210 FvH4_4g12210 FvH4_4g12210 FvH4_4g12210 FvH4_4g12210 FvH4_4g12210 FvH4_4g12210 FvH4_4g12210 FvH4_4g12210
malus_domestica	MD04G1028500.v1.1 MD04G1028600.v1.1 MD13G1278800.v1.1 MD13G1279000.v1.1
prunus_persica	Prupe.1G177800_v2.0.a1 Prupe.1G177800_v2.0.a1 Prupe.1G177800_v2.0.a1 Prupe.1G177800_v2.0.a1
pyrus_communis	pycom13g29460
rosa_chinensis	RchiOBHm_Chr4g0409981
rosa_laevigata	RLG00000008508
rosa_multiflora	Rmu_sc0000706.1_g000028 Rmu_sc0003441.1_g000038
rosa_roxburghii	Rroxscaffold_1G00045570 Rroxscaffold_5G00354500 Rroxscaffold_7G00212600
rosa_rugosa	Rorug04G0100200 Rorug04G0100300 Rorug04G0100400 Rorug04G0100500
rosa_samantha	Rh4AG158800 Rh4BG158200 Rh4CG169800 Rh4DG153800
rosa_wichuraiana	Rw4G013120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	237
AciI	CCGC	2 cut(s)	176, 237
AcuI	CTGAAG	1 cut(s)	165
AfaI	GTAC	1 cut(s)	132
AflII	CTTAAG	1 cut(s)	85
AgsI	TTSAA	1 cut(s)	259
AluBI	AGCT	2 cut(s)	55, 255
AluI	AGCT	2 cut(s)	55, 255
ApeKI	GCWGC	2 cut(s)	290, 293
AsuHPI	GGTGA	1 cut(s)	20
AsuII	TTCGAA	1 cut(s)	121
AxyI	CCTNAGG	1 cut(s)	21
BbvI	GCAGC	2 cut(s)	277, 305
BfmI	CTRYAG	1 cut(s)	291
BfrI	CTTAAG	1 cut(s)	85
BisI	GCNGC	3 cut(s)	238, 291, 294
BlsI	GCNGC	3 cut(s)	239, 292, 295
BmsI	GCATC	1 cut(s)	22
BplI	GAGNNNNNCTC	2 cut(s)	226, 258
Bpu14I	TTCGAA	1 cut(s)	121
BsaAI	YACGTR	1 cut(s)	59
Bse21I	CCTNAGG	1 cut(s)	21
Bse3DI	GCAATG	1 cut(s)	36
BseMI	GCAATG	1 cut(s)	36
BseXI	GCAGC	2 cut(s)	277, 305
Bsp119I	TTCGAA	1 cut(s)	121
BspACI	CCGC	2 cut(s)	176, 237
BspHI	TCATGA	1 cut(s)	186
BspMAI	CTGCAG	1 cut(s)	295
BspT104I	TTCGAA	1 cut(s)	121
BspTI	CTTAAG	1 cut(s)	85
BsrBI	CCGCTC	1 cut(s)	237
BsrDI	GCAATG	1 cut(s)	36
BstAFI	CTTAAG	1 cut(s)	85
BstBAI	YACGTR	1 cut(s)	59
BstBI	TTCGAA	1 cut(s)	121
BstDEI	CTNAG	1 cut(s)	21
BstMWI	GCNNNNNNNGC	2 cut(s)	32, 146
BstSFI	CTRYAG	1 cut(s)	291
BstSNI	TACGTA	1 cut(s)	59
BstV1I	GCAGC	2 cut(s)	277, 305
Bsu36I	CCTNAGG	1 cut(s)	21
BtsIMutI	CAGTG	1 cut(s)	141
CciI	TCATGA	1 cut(s)	186
Csp6I	GTAC	1 cut(s)	131
CviAII	CATG	2 cut(s)	187, 216
CviJI	RGCY	8 cut(s)	19, 55, 69, 140, 209, 240, 255, 290
CviKI_1	RGCY	8 cut(s)	19, 55, 69, 140, 209, 240, 255, 290
CviQI	GTAC	1 cut(s)	131
DdeI	CTNAG	1 cut(s)	21
EciI	GGCGGA	1 cut(s)	191
Eco105I	TACGTA	1 cut(s)	59
Eco57I	CTGAAG	1 cut(s)	165
Eco81I	CCTNAGG	1 cut(s)	21
FaeI	CATG	2 cut(s)	190, 219
FaiI	YATR	2 cut(s)	188, 217
FatI	CATG	2 cut(s)	186, 215
Fnu4HI	GCNGC	3 cut(s)	238, 291, 294
Fsp4HI	GCNGC	3 cut(s)	238, 291, 294
GluI	GCNGC	3 cut(s)	238, 291, 294
Hin1II	CATG	2 cut(s)	190, 219
HinfI	GANTC	1 cut(s)	212
HphI	GGTGA	1 cut(s)	20
Hpy188III	TCNNGA	3 cut(s)	98, 187, 303
HpyCH4IV	ACGT	3 cut(s)	58, 108, 195
HpyCH4V	TGCA	2 cut(s)	113, 293
HpyF10VI	GCNNNNNNNGC	2 cut(s)	32, 146
HpyF3I	CTNAG	1 cut(s)	21
HpySE526I	ACGT	3 cut(s)	58, 108, 195
Hsp92II	CATG	2 cut(s)	190, 219
LmnI	GCTCC	1 cut(s)	178
LpnPI	CCDG	1 cut(s)	83
Lsp1109I	GCAGC	2 cut(s)	277, 305
LweI	GCATC	1 cut(s)	22
MaeII	ACGT	3 cut(s)	58, 108, 195
MaeIII	GTNAC	1 cut(s)	59
MbiI	CCGCTC	1 cut(s)	237
MfeI	CAATTG	1 cut(s)	150
MluCI	AATT	1 cut(s)	150
MnlI	CCTC	1 cut(s)	4
MseI	TTAA	1 cut(s)	86
MspCI	CTTAAG	1 cut(s)	85
MunI	CAATTG	1 cut(s)	150
MwoI	GCNNNNNNNGC	2 cut(s)	32, 146
NlaIII	CATG	2 cut(s)	190, 219
NspV	TTCGAA	1 cut(s)	121
PagI	TCATGA	1 cut(s)	186
PfeI	GAWTC	1 cut(s)	212
PkrI	GCNGC	3 cut(s)	239, 292, 295
Ppu21I	YACGTR	1 cut(s)	59
PstI	CTGCAG	1 cut(s)	295
RsaI	GTAC	1 cut(s)	132
RsaNI	GTAC	1 cut(s)	131
SaqAI	TTAA	1 cut(s)	86
SatI	GCNGC	3 cut(s)	238, 291, 294
SetI	ASST	6 cut(s)	15, 57, 61, 111, 198, 257
SfaNI	GCATC	1 cut(s)	22
SfcI	CTRYAG	1 cut(s)	291
SfuI	TTCGAA	1 cut(s)	121
SgeI	CNNG	6 cut(s)	110, 149, 184, 199, 228, 268
SmlI	CTYRAG	1 cut(s)	85
SmoI	CTYRAG	1 cut(s)	85
SnaBI	TACGTA	1 cut(s)	59
Sse9I	AATT	1 cut(s)	150
SsiI	CCGC	2 cut(s)	176, 237
SspI	AATATT	1 cut(s)	104
TaiI	ACGT	3 cut(s)	61, 111, 198
TaqI	TCGA	1 cut(s)	121
TasI	AATT	1 cut(s)	150
TauI	GCSGC	1 cut(s)	240
TfiI	GAWTC	1 cut(s)	212
Tru1I	TTAA	1 cut(s)	86
Tru9I	TTAA	1 cut(s)	86
TscAI	CASTG	1 cut(s)	148
TseI	GCWGC	2 cut(s)	290, 293
TspDTI	ATGAA	2 cut(s)	203, 204
TspRI	CASTG	1 cut(s)	148
Vha464I	CTTAAG	1 cut(s)	85

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.