Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0002114

Physical Location & Seq

Genomic Coordinates Reverse (-)

63108277 .. 63109318

Gene Structure 1042 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00212600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 381 bp

ATGCATAGAGAGTATTTGTCGCTGCAAGAACAAGAACTTTTTGGTCATTGGTTCTCACACCCTGAAGCATATGAGATAAAAGAGCCATACAATTACACTCCTGTAGGAATTGGGAGAAAAGAACCTGAAGCAATAGCTGCTCCATCCTTAAAGCGTTTGTTTGTTGAGAACCAACCTTACTTAGTTGGTGGGTACAGCCAAACCCAATTGTCAAGCAATCTACTGCCTCCCAATTGTGTTGTTGGCTCTAAGTTCAACTCTAGGCTTCTGAGGCTAAAAGCTTCTCAACTTGATGCTCCTACCAATATACTTTCTATGGCTGAGAAGTACGAGTACATGAGGGATACTTTTCGAAAAAGACTAGTGTTTGGTAAGATATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000785 GO:0001067 GO:0003002 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003824 GO:0005488 GO:0005543 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005737 GO:0005886 GO:0006325 GO:0006355 GO:0006464 GO:0006479 GO:0006807 GO:0006996 GO:0007275 GO:0007389 GO:0008150 GO:0008152 GO:0008168 GO:0008170 GO:0008213 GO:0008276 GO:0008289 GO:0008757 GO:0009653 GO:0009791 GO:0009889 GO:0009908 GO:0009909 GO:0009987 GO:0010093 GO:0010314 GO:0010468 GO:0010556 GO:0016020 GO:0016043 GO:0016278 GO:0016279 GO:0016569 GO:0016570 GO:0016571 GO:0016740 GO:0016741 GO:0018022 GO:0018024 GO:0018193 GO:0018205 GO:0019219 GO:0019222 GO:0019538 GO:0022414 GO:0031323 GO:0031326 GO:0032259 GO:0032501 GO:0032502 GO:0034968 GO:0035091 GO:0036211 GO:0042054 GO:0042800 GO:0043167 GO:0043168 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043412 GO:0043414 GO:0044212 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044427 GO:0044446 GO:0044464 GO:0048367 GO:0048437 GO:0048444 GO:0048449 GO:0048518 GO:0048578 GO:0048580 GO:0048582 GO:0048583 GO:0048584 GO:0048586 GO:0048608 GO:0048646 GO:0048731 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051094 GO:0051171 GO:0051239 GO:0051240 GO:0051252 GO:0051276 GO:0051568 GO:0060255 GO:0061458 GO:0065007 GO:0071704 GO:0071840 GO:0071944 GO:0080090 GO:0090567 GO:0090696 GO:0090697 GO:0090698 GO:0090701 GO:0097159 GO:0099402 GO:0140096 GO:1901363 GO:1901564 GO:1901981 GO:1903506 GO:1905392 GO:1905393 GO:2000026 GO:2000028 GO:2000112 GO:2000241 GO:2000243 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FYRC FYRN PHD_2 PWWP SET zf-HC5HC2H_2

Protein Analysis

126

Amino Acids

14.58

Weight (kDa)

9.01

Isoelectric Point (pI)

49.87

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002114)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G05830 AT1G05830 AT1G05830 AT1G05830 AT2G31650
fragaria_vesca	FvH4_4g12210 FvH4_4g12210 FvH4_4g12210 FvH4_4g12210 FvH4_4g12210 FvH4_4g12210 FvH4_4g12210 FvH4_4g12210 FvH4_4g12210 FvH4_4g12210 FvH4_4g12210 FvH4_4g12210 FvH4_4g12210 FvH4_4g12210
malus_domestica	MD04G1028500.v1.1 MD04G1028600.v1.1 MD13G1278800.v1.1 MD13G1279000.v1.1
prunus_persica	Prupe.1G177800_v2.0.a1 Prupe.1G177800_v2.0.a1 Prupe.1G177800_v2.0.a1 Prupe.1G177800_v2.0.a1
pyrus_communis	pycom13g29460
rosa_chinensis	RchiOBHm_Chr4g0409981
rosa_laevigata	RLG00000008508
rosa_multiflora	Rmu_sc0000706.1_g000028 Rmu_sc0003441.1_g000038
rosa_roxburghii	Rroxscaffold_1G00045570 Rroxscaffold_5G00354500 Rroxscaffold_7G00212600
rosa_rugosa	Rorug04G0100200 Rorug04G0100300 Rorug04G0100400 Rorug04G0100500
rosa_samantha	Rh4AG158800 Rh4BG158200 Rh4CG169800 Rh4DG153800
rosa_wichuraiana	Rw4G013120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcuI	CTGAAG	2 cut(s)	84, 147
AfaI	GTAC	3 cut(s)	194, 329, 335
AgsI	TTSAA	1 cut(s)	256
AhlI	ACTAGT	1 cut(s)	361
AluBI	AGCT	2 cut(s)	137, 281
AluI	AGCT	2 cut(s)	137, 281
ApeKI	GCWGC	2 cut(s)	22, 137
AsuII	TTCGAA	1 cut(s)	352
BarI	GAAGNNNNNNTAC	2 cut(s)	317, 349
BbvI	GCAGC	2 cut(s)	9, 124
BccI	CCATC	1 cut(s)	151
BciVI	GTATCC	1 cut(s)	337
BcuI	ACTAGT	1 cut(s)	361
BfaI	CTAG	2 cut(s)	261, 362
BfmI	CTRYAG	1 cut(s)	102
BfuI	GTATCC	1 cut(s)	337
BisI	GCNGC	2 cut(s)	23, 138
BlsI	GCNGC	2 cut(s)	24, 139
BmsI	GCATC	1 cut(s)	283
Bpu14I	TTCGAA	1 cut(s)	352
BseGI	GGATG	1 cut(s)	143
BseMII	CTCAG	2 cut(s)	260, 312
BseXI	GCAGC	2 cut(s)	9, 124
Bsp119I	TTCGAA	1 cut(s)	352
BspCNI	CTCAG	2 cut(s)	261, 313
BspT104I	TTCGAA	1 cut(s)	352
BstAPI	GCANNNNNTGC	1 cut(s)	137
BstBI	TTCGAA	1 cut(s)	352
BstDEI	CTNAG	4 cut(s)	181, 249, 269, 321
BstF5I	GGATG	1 cut(s)	143
BstMWI	GCNNNNNNNGC	2 cut(s)	137, 271
BstSFI	CTRYAG	1 cut(s)	102
BstV1I	GCAGC	2 cut(s)	9, 124
BsuI	GTATCC	1 cut(s)	337
BtsCI	GGATG	1 cut(s)	143
Csp6I	GTAC	3 cut(s)	193, 328, 334
CviAII	CATG	1 cut(s)	337
CviJI	RGCY	8 cut(s)	85, 137, 198, 246, 265, 274, 281, 320
CviKI_1	RGCY	8 cut(s)	85, 137, 198, 246, 265, 274, 281, 320
CviQI	GTAC	3 cut(s)	193, 328, 334
DdeI	CTNAG	4 cut(s)	181, 249, 269, 321
Eco57I	CTGAAG	2 cut(s)	84, 147
EcoT22I	ATGCAT	1 cut(s)	6
FaeI	CATG	1 cut(s)	340
FaiI	YATR	8 cut(s)	6, 70, 72, 88, 308, 317, 338, 379
FatI	CATG	1 cut(s)	336
FauNDI	CATATG	1 cut(s)	70
Fnu4HI	GCNGC	2 cut(s)	23, 138
FokI	GGATG	1 cut(s)	130
Fsp4HI	GCNGC	2 cut(s)	23, 138
FspBI	CTAG	2 cut(s)	261, 362
GluI	GCNGC	2 cut(s)	23, 138
Hin1II	CATG	1 cut(s)	340
HindIII	AAGCTT	1 cut(s)	279
Hpy188I	TCNGA	1 cut(s)	270
HpyCH4V	TGCA	2 cut(s)	4, 25
HpyF10VI	GCNNNNNNNGC	2 cut(s)	137, 271
HpyF3I	CTNAG	4 cut(s)	181, 249, 269, 321
Hsp92II	CATG	1 cut(s)	340
LmnI	GCTCC	2 cut(s)	145, 301
LpnPI	CCDG	3 cut(s)	75, 114, 138
Lsp1109I	GCAGC	2 cut(s)	9, 124
LweI	GCATC	1 cut(s)	283
MaeI	CTAG	2 cut(s)	261, 362
MfeI	CAATTG	2 cut(s)	206, 232
MluCI	AATT	4 cut(s)	91, 108, 206, 232
MnlI	CCTC	3 cut(s)	237, 264, 333
Mph1103I	ATGCAT	1 cut(s)	6
MseI	TTAA	1 cut(s)	149
MunI	CAATTG	2 cut(s)	206, 232
MwoI	GCNNNNNNNGC	2 cut(s)	137, 271
NdeI	CATATG	1 cut(s)	70
NlaIII	CATG	1 cut(s)	340
NsiI	ATGCAT	1 cut(s)	6
NspV	TTCGAA	1 cut(s)	352
PkrI	GCNGC	2 cut(s)	24, 139
PsrI	GAACNNNNNNTAC	2 cut(s)	161, 193
RsaI	GTAC	3 cut(s)	194, 329, 335
RsaNI	GTAC	3 cut(s)	193, 328, 334
SaqAI	TTAA	1 cut(s)	149
SatI	GCNGC	2 cut(s)	23, 138
SetI	ASST	4 cut(s)	127, 139, 178, 283
SfaNI	GCATC	1 cut(s)	283
SfcI	CTRYAG	1 cut(s)	102
SfuI	TTCGAA	1 cut(s)	352
SpeI	ACTAGT	1 cut(s)	361
Sse9I	AATT	4 cut(s)	91, 108, 206, 232
SspMI	CTAG	2 cut(s)	261, 362
TaqI	TCGA	1 cut(s)	352
TasI	AATT	4 cut(s)	91, 108, 206, 232
TatI	WGTACW	1 cut(s)	333
Tru1I	TTAA	1 cut(s)	149
Tru9I	TTAA	1 cut(s)	149
TseI	GCWGC	2 cut(s)	22, 137
XspI	CTAG	2 cut(s)	261, 362
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.