Rorug04G0100300

Histone-lysine n-methyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0002114
Physical Location & Seq
Forward (+)
15706217 .. 15707528
1312 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0100300.1

Sequence Viewer

Length: 507 bp
ATGGCCCGATTCTTCTTCACTCAGAGTCTCCAACTCCGCCACTCCCTCCTCCGGTGCCGGCCCCGGCCAGCCCATGCCCACCGGGCCTACTCTACCCGATCCGGGCAGCTCTTCGAGATCGAGATAAACCCCTCCACCTCCAGCTCATCGGAAGGCGAATCGGAGGCCCTCATGCTCAAGAAGCTAGACGACATCGTTCAGAGGATCCTCGTCCAGAAGGCCACCCCCGATTGGCTCCCCTTCGTTCCCGGCTCCTCCTTCTGGGTCCCGCCCCGACGGTCCCCCCTCGGTGTCAACGACTTCGTCGGAACATTGGCTGACAAGCTCTCCGATGAGGAGTCCCTCTCCGTCGCCACCGACCGAGGCTGGCCCTGCTCTGGTTTTTTCATCAATGGCAGTGAATCTGCGGAAACAAAGGAGGTTGGTGATGAGGCAGAAGGATCAGGAGAACTAGAGGTGGTGGAGGTGGATGTAAAGGTTTTGACAGCCAACTTGGAGGATGAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000785 GO:0001067 GO:0003002 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003824 GO:0005488 GO:0005543 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005737 GO:0005886 GO:0006325 GO:0006355 GO:0006464 GO:0006479 GO:0006807 GO:0006996 GO:0007275 GO:0007389 GO:0008150 GO:0008152 GO:0008168 GO:0008170 GO:0008213 GO:0008276 GO:0008289 GO:0008757 GO:0009653 GO:0009791 GO:0009889 GO:0009908 GO:0009909 GO:0009987 GO:0010093 GO:0010314 GO:0010468 GO:0010556 GO:0016020 GO:0016043 GO:0016278 GO:0016279 GO:0016569 GO:0016570 GO:0016571 GO:0016740 GO:0016741 GO:0018022 GO:0018024 GO:0018193 GO:0018205 GO:0019219 GO:0019222 GO:0019538 GO:0022414 GO:0031323 GO:0031326 GO:0032259 GO:0032501 GO:0032502 GO:0034968 GO:0035091 GO:0036211 GO:0042054 GO:0042800 GO:0043167 GO:0043168 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043412 GO:0043414 GO:0044212 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044427 GO:0044446 GO:0044464 GO:0048367 GO:0048437 GO:0048444 GO:0048449 GO:0048518 GO:0048578 GO:0048580 GO:0048582 GO:0048583 GO:0048584 GO:0048586 GO:0048608 GO:0048646 GO:0048731 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051094 GO:0051171 GO:0051239 GO:0051240 GO:0051252 GO:0051276 GO:0051568 GO:0060255 GO:0061458 GO:0065007 GO:0071704 GO:0071840 GO:0071944 GO:0080090 GO:0090567 GO:0090696 GO:0090697 GO:0090698 GO:0090701 GO:0097159 GO:0099402 GO:0140096 GO:1901363 GO:1901564 GO:1901981 GO:1903506 GO:1905392 GO:1905393 GO:2000026 GO:2000028 GO:2000112 GO:2000241 GO:2000243 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FYRC FYRN PHD_2 PWWP SET zf-HC5HC2H_2

Protein Analysis

168

Amino Acids

18.58

Weight (kDa)

4.8

Isoelectric Point (pI)

49.07

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 54
AciI CCGC 3 cut(s) 37, 269, 407
AclWI GGATC 4 cut(s) 93, 199, 212, 448
AcoI YGGCCR 1 cut(s) 65
AfiI CCNNNNNNNGG 5 cut(s) 51, 102, 231, 261, 377
AluBI AGCT 4 cut(s) 109, 144, 184, 325
AluI AGCT 4 cut(s) 109, 144, 184, 325
Alw26I GTCTC 1 cut(s) 32
AlwI GGATC 4 cut(s) 93, 199, 212, 448
AoxI GGCC 7 cut(s) 3, 59, 65, 84, 165, 219, 368
ApeKI GCWGC 1 cut(s) 106
AspS9I GGNCC 7 cut(s) 4, 60, 84, 166, 265, 279, 369
AsuC2I CCSGG 4 cut(s) 64, 83, 103, 249
AsuHPI GGTGA 1 cut(s) 437
AvaII GGWCC 2 cut(s) 265, 279
BamHI GGATCC 1 cut(s) 204
BanI GGYRCC 1 cut(s) 54
BbvI GCAGC 1 cut(s) 118
BcnI CCSGG 4 cut(s) 64, 83, 103, 249
BcoDI GTCTC 1 cut(s) 32
BfaI CTAG 2 cut(s) 185, 452
BglI GCCNNNNNGGC 1 cut(s) 83
BisI GCNGC 1 cut(s) 107
BlsI GCNGC 1 cut(s) 108
Bme1390I CCNGG 4 cut(s) 64, 83, 103, 249
Bme18I GGWCC 2 cut(s) 265, 279
BmgT120I GGNCC 7 cut(s) 4, 60, 84, 166, 265, 279, 369
BmiI GGNNCC 8 cut(s) 56, 62, 206, 236, 253, 266, 267, 281
BmrFI CCNGG 4 cut(s) 64, 83, 103, 249
BplI GAGNNNNNCTC 2 cut(s) 329, 361
BpmI CTGGAG 1 cut(s) 124
BpuEI CTTGAG 1 cut(s) 161
BpuMI CCSGG 4 cut(s) 64, 83, 103, 249
BsaJI CCNNGG 3 cut(s) 62, 286, 361
BsaWI WCCGGW 1 cut(s) 51
BsaXI ACNNNNNCTCC 3 cut(s) 311, 341, 488
Bsc4I CCNNNNNNNGG 5 cut(s) 51, 102, 231, 261, 377
Bse118I RCCGGY 1 cut(s) 57
BseDI CCNNGG 3 cut(s) 62, 286, 361
BseGI GGATG 2 cut(s) 475, 505
BseLI CCNNNNNNNGG 5 cut(s) 51, 102, 231, 261, 377
BseMII CTCAG 1 cut(s) 35
BseRI GAGGAG 3 cut(s) 38, 244, 350
BseXI GCAGC 1 cut(s) 118
Bsh1285I CGRYCG 1 cut(s) 361
BshFI GGCC 7 cut(s) 5, 61, 67, 86, 167, 221, 370
BshNI GGYRCC 1 cut(s) 54
BsiEI CGRYCG 1 cut(s) 361
BsiSI CCGG 6 cut(s) 52, 58, 64, 82, 102, 249
BslFI GGGAC 3 cut(s) 251, 265, 325
BslI CCNNNNNNNGG 5 cut(s) 51, 102, 231, 261, 377
BsmAI GTCTC 1 cut(s) 32
BsmFI GGGAC 3 cut(s) 251, 265, 325
BsnI GGCC 7 cut(s) 5, 61, 67, 86, 167, 221, 370
Bsp143I GATC 4 cut(s) 98, 117, 204, 440
BspACI CCGC 3 cut(s) 37, 269, 407
BspANI GGCC 7 cut(s) 5, 61, 67, 86, 167, 221, 370
BspCNI CTCAG 1 cut(s) 34
BspLI GGNNCC 8 cut(s) 56, 62, 206, 236, 253, 266, 267, 281
BspPI GGATC 4 cut(s) 93, 199, 212, 448
BspQI GCTCTTC 1 cut(s) 116
BspT107I GGYRCC 1 cut(s) 54
BsrFI RCCGGY 1 cut(s) 57
BssAI RCCGGY 1 cut(s) 57
BssECI CCNNGG 3 cut(s) 62, 286, 361
BssMI GATC 4 cut(s) 98, 117, 204, 440
Bst4CI ACNGT 1 cut(s) 279
Bst6I CTCTTC 1 cut(s) 116
BstC8I GCNNGC 3 cut(s) 59, 69, 368
BstDEI CTNAG 1 cut(s) 21
BstF5I GGATG 2 cut(s) 475, 505
BstKTI GATC 4 cut(s) 101, 120, 207, 443
BstMAI GTCTC 1 cut(s) 32
BstMBI GATC 4 cut(s) 98, 117, 204, 440
BstMCI CGRYCG 1 cut(s) 361
BstMWI GCNNNNNNNGC 3 cut(s) 83, 181, 372
BstSCI CCNGG 4 cut(s) 62, 81, 101, 247
BstV1I GCAGC 1 cut(s) 118
BstX2I RGATCY 1 cut(s) 204
BstYI RGATCY 1 cut(s) 204
BsuRI GGCC 7 cut(s) 5, 61, 67, 86, 167, 221, 370
BtsCI GGATG 2 cut(s) 475, 505
BtsI GCAGTG 1 cut(s) 403
BtsIMutI CAGTG 1 cut(s) 403
Cac8I GCNNGC 3 cut(s) 59, 69, 368
Cfr10I RCCGGY 1 cut(s) 57
Cfr13I GGNCC 7 cut(s) 4, 60, 84, 166, 265, 279, 369
CviAII CATG 2 cut(s) 74, 172
DdeI CTNAG 1 cut(s) 21
DpnI GATC 4 cut(s) 100, 119, 206, 442
DpnII GATC 4 cut(s) 98, 117, 204, 440
EaeI YGGCCR 1 cut(s) 65
Eam1104I CTCTTC 1 cut(s) 116
EarI CTCTTC 1 cut(s) 116
EciI GGCGGA 1 cut(s) 26
Eco47I GGWCC 2 cut(s) 265, 279
EcoO109I RGGNCCY 2 cut(s) 166, 265
FaeI CATG 2 cut(s) 77, 175
FaiI YATR 2 cut(s) 75, 173
FaqI GGGAC 3 cut(s) 251, 265, 325
FatI CATG 2 cut(s) 73, 171
FauI CCCGC 1 cut(s) 276
Fnu4HI GCNGC 1 cut(s) 107
FokI GGATG 1 cut(s) 482
Fsp4HI GCNGC 1 cut(s) 107
FspBI CTAG 2 cut(s) 185, 452
GluI GCNGC 1 cut(s) 107
GsuI CTGGAG 1 cut(s) 124
HaeIII GGCC 7 cut(s) 5, 61, 67, 86, 167, 221, 370
HapII CCGG 6 cut(s) 52, 58, 64, 82, 102, 249
Hin1II CATG 2 cut(s) 77, 175
HincII GTYRAC 1 cut(s) 295
HindII GTYRAC 1 cut(s) 295
HinfI GANTC 5 cut(s) 9, 25, 158, 338, 401
HpaII CCGG 6 cut(s) 52, 58, 64, 82, 102, 249
HphI GGTGA 1 cut(s) 437
Hpy166II GTNNAC 1 cut(s) 295
Hpy188I TCNGA 6 cut(s) 24, 151, 163, 201, 308, 331
Hpy188III TCNNGA 5 cut(s) 115, 121, 178, 214, 444
Hpy8I GTNNAC 1 cut(s) 295
Hpy99I CGWCG 3 cut(s) 279, 308, 353
HpyAV CCTTC 5 cut(s) 146, 211, 250, 268, 431
HpyCH4III ACNGT 1 cut(s) 279
HpyF10VI GCNNNNNNNGC 3 cut(s) 83, 181, 372
HpyF3I CTNAG 1 cut(s) 21
Hsp92II CATG 2 cut(s) 77, 175
KflI GGGWCCC 1 cut(s) 265
KroI GCCGGC 1 cut(s) 57
KroNI GCCGGC 1 cut(s) 59
Kzo9I GATC 4 cut(s) 98, 117, 204, 440
LguI GCTCTTC 1 cut(s) 116
LmnI GCTCC 2 cut(s) 240, 257
Lsp1109I GCAGC 1 cut(s) 118
MaeI CTAG 2 cut(s) 185, 452
MalI GATC 4 cut(s) 100, 119, 206, 442
MboI GATC 4 cut(s) 98, 117, 204, 440
MboII GAAGA 3 cut(s) 4, 7, 103
MflI RGATCY 1 cut(s) 204
MlyI GAGTC 2 cut(s) 34, 347
MmeI TCCRAC 2 cut(s) 55, 286
MroNI GCCGGC 1 cut(s) 57
MspI CCGG 6 cut(s) 52, 58, 64, 82, 102, 249
MspR9I CCNGG 4 cut(s) 64, 83, 103, 249
MwoI GCNNNNNNNGC 3 cut(s) 83, 181, 372
NaeI GCCGGC 1 cut(s) 59
NciI CCSGG 4 cut(s) 64, 83, 103, 249
NdeII GATC 4 cut(s) 98, 117, 204, 440
NgoMIV GCCGGC 1 cut(s) 57
NlaIII CATG 2 cut(s) 77, 175
NlaIV GGNNCC 8 cut(s) 56, 62, 206, 236, 253, 266, 267, 281
PciSI GCTCTTC 1 cut(s) 116
PcsI WCGNNNNNNNCGW 1 cut(s) 294
PdiI GCCGGC 1 cut(s) 59
PfeI GAWTC 3 cut(s) 9, 158, 401
PflFI GACNNNGTC 1 cut(s) 302
PkrI GCNGC 1 cut(s) 108
PleI GAGTC 2 cut(s) 33, 346
PpsI GAGTC 2 cut(s) 33, 346
PpuMI RGGWCCY 1 cut(s) 265
Psp5II RGGWCCY 1 cut(s) 265
PspN4I GGNNCC 8 cut(s) 56, 62, 206, 236, 253, 266, 267, 281
PspPI GGNCC 7 cut(s) 4, 60, 84, 166, 265, 279, 369
PspPPI RGGWCCY 1 cut(s) 265
PsuI RGATCY 1 cut(s) 204
PsyI GACNNNGTC 1 cut(s) 302
SapI GCTCTTC 1 cut(s) 116
SatI GCNGC 1 cut(s) 107
Sau3AI GATC 4 cut(s) 98, 117, 204, 440
Sau96I GGNCC 7 cut(s) 4, 60, 84, 166, 265, 279, 369
SchI GAGTC 2 cut(s) 34, 347
ScrFI CCNGG 4 cut(s) 64, 83, 103, 249
SetI ASST 9 cut(s) 111, 140, 146, 186, 327, 423, 459, 468, 480
SinI GGWCC 2 cut(s) 265, 279
SmlI CTYRAG 1 cut(s) 176
SmoI CTYRAG 1 cut(s) 176
SsiI CCGC 3 cut(s) 37, 269, 407
SspMI CTAG 2 cut(s) 185, 452
StyD4I CCNGG 4 cut(s) 62, 81, 101, 247
TaaI ACNGT 1 cut(s) 279
TaqI TCGA 2 cut(s) 114, 120
TaqII GACCGA 1 cut(s) 375
TfiI GAWTC 3 cut(s) 9, 158, 401
TscAI CASTG 1 cut(s) 403
TseI GCWGC 1 cut(s) 106
TspDTI ATGAA 1 cut(s) 376
TspGWI ACGGA 1 cut(s) 337
TspRI CASTG 1 cut(s) 403
Tth111I GACNNNGTC 1 cut(s) 302
VpaK11BI GGWCC 2 cut(s) 265, 279
XspI CTAG 2 cut(s) 185, 452
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.