Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr14

Orthogroup ID

OG0006941

Physical Location & Seq

Genomic Coordinates Forward (+)

4007818 .. 4015918

Gene Structure 8101 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD14G1042200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2895 bp

ATGACCCGACGGCTCTACAAGAAGCTCCGTCTCTCTCTCGTCCCCTGCAAGCCGCGCCTCCGCTTTCTCTCTCCTCCTCCCCACCTCTCTCTCTCCTCCACGCTCCACCTTTGCAAGTCCCTCGCACGCGCCCTCGCCGCCAAAACCCCAGCGCTCTTCTCCCCCCACTCCGAAGTTCACCACGCCATGGACGGTTCCTTCGGCGACGACGCCTTCTGGGACCTCGACTTCCGCCCCCATTTCCGCTCCCAGCGCCCCCGCCTCCACGACGACTACGACGACAACGGCGACAGCGACGGCGTTTTAGGCAATGCGGTTGATAAGGTCTATCTCGTTCCCTACAGGTGGTGGAAGGAGGCTCGGACGGAGGAGGATTGCAATGGAGGGGTCCTGTACACTGCTACGATGGAGGACGACGACGACGACGACGACGACGACGACGACGACGACGCCGCCGCTGAAATTGTACTGAATTTGAAGAAGAACGACGTCGTTGAAGAGGGGTTTTCGGGGCGCGAGTACGCCTTGGTCCCTGAATCAACGTGGTGTCGCGCTCTCATACGGCATAATGATTTCAACGCAGCAAAGAAGGATAACGTGAGCTTTTTTGGTGCAGAAAACTTGTGGAAGGATATTTTTTCTCTACAAATTAGGCTATTGGTTTCCTGGGAAACAAATTCATTGTTCGTAAAGATCAGCCAAAAGGATAATGCAATAGTCTCGTACAAGAGGGCCTGTAATATTTTCAGTTCAGAGTATGTTCCGTTGCTTATTTGGGACTTCTCTGGGCAGACAACCCAATTTTTCATGAATGACAGAGTTGATTTGCCAAGCAATATTTCTGAACAGCTGAACAAAGAGATTCTCCTTGAATTGCGACTCCATGGATTTTCAGATTATATGAAAGGTACAGATTGGAGGAGCGATGAACTGGCTGATAAAGAGTCAAGTTTGGATGGTTCTACTTCTACTTATGGTGGCTCTATTAAGATGAATGGAACAACTGACTATGTGAATCCTTATTTAACTCCAATTAACTCCTTGCAAAGTGGTATAATCTATAGAGGAGTATGTTCCTTAGGCCTTACTGGACTAGAGAATCTTGGGAATACTTGTTTTATGAACAGTGCCATCCAATGCTTGGTGCATACTCCGAAGCTGGTTGATTACTTTCTAGGAGATTACCGGAAGGACATAAATTACGCAAATCCACTAGGATTGAAAGGAGAGCTTGCTTTAGCATTTGGAGAGTTGTTGAGGAGGTTATGGGCTCCAGGTGCAAGGCCAGTGGCTCCAACAATGTTCAAGTTAAAACTTGCTAATTTTGCTCCCCAATTCAGTGGCTATAATCAGCATGATTCCCAGGAACTTCTTGCTTTTTTGTTGGATGGTCTCCATGAAGATCTAAATCGTGTAAAATGCAAGCCATATATTGAAGCTAAGGATGTAGAGGGTCGTCTAGATGATGAAGTAGCAGAAGAATATTGGCAAAATCACCTTGCTCGGAATGACTCAAGCATTGTTGATGTGTGCCAAGGTCAATACCGATCAAAATTGGTTTGCCCTGCTTGCAACAAGGTGTCTGTTATGTTTGACCCATTTATGTACCTTTCGATACCGTTACCTTCAACATCAATTCGGACTATGACTTTGACGGTCCTAAGCACAGATGGGACTGCGATGCCATCTACACTTACTGTGACGGTGCCCCAGGGTGGGAGGTTGATGGATCTTACTAATGCCTTAAGCACTGCCTGTTGCTTAAGAGATGATGAAACTCTGTTGGTAGCTGAGATATACAAGAGTAGTATTTTTCGTGTACTAGAAGATCCATTTGATTCATTAGCCTTGATCAGAGATGGTGACCTGTTGGTTGCTTATCGGTTACCAAAGGATTGTGAGTCGTCCCTTTTGGTTACTTTTATTCATCAGCAGATGGACGTGGGCTACAGTAATGGAGACATGAGCTTAGTCCCATTGGCGTTTGGCGTTCCCCTCATAGCAAGGTTGCCTGATGTTTGCAATGGATCTGATATTTGTAACGAGTTCCTGAAAGTACTAAATCCTTACTTGATGCCTACTGGAGATGCATTAGATATTTTTGATGATGATACTGGAAATTATGCTACTGAAGATTCTAGCAAGGAGGATGCTACTACTCCTACGATTATGGATAATGATGCTTACTCGGACAGGGAATCAGGGGATGAAGCACATTTGGATAATGACTTCCAGTTTTACTTAACAGGTACAAAGGCAGCTACAGAAGACACCTTGATAGAGATGAATGAGCCAATAGTGGTCTCAAAGTTGCCTAAGAGGTTGAGTGTTCTTGTTTTATGGTCCGATAAAATGACTAAAAAGTATGATACATGCCTTCTAAGCAATTTGCCGGAAATTTTTAAGCCCCAATTTTTTGTGAGGAGGCCTCAAGAATCTGTTTCTCTGTACAAATGCCTGGAAGCCTTTATGAAGGAAGAACCTTTAGGACCAGAAGATATGTGGTACTGCCCTACCTGCAAGAGGCCTCAGCAAGCTAGCAAAAAGTTAGATCCTTGGAGGTTGCCTGAGATTTTGGTTATTCATCTGAAAAGATTCTCGTACAGCCATTATTTTAAGAACAAGCTAGAAACATTTGTTGATTTTCCAGTTCATGATCTTGATTGTTCACGCTACATTTCCCACCAAAGAAGCCAGTTATCCAGCCGATACATGTTGTATGCGATTAGTAATCACTATGGTGGCTTGGGCGGTGGTCACTATACTGCATTTGCTCAACTCGGTGATGGTTCGTGGTATGAGTTTGATGATGACAGGGTTTGTCCTGTTAGGGAAGAGACGATCAAGACATCAGCTGCATATGTTCTTTTCTACAGAAGAATACCAAATGTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04137 map04137

Pfam Domains

Protein Families

UCH

Protein Analysis

965

Amino Acids

109.25

Weight (kDa)

4.94

Isoelectric Point (pI)

42.87

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ubiquitin_UBP8	PF25242	217 - 271	6.5e-28	UBP8-like, ubiquitin-like domain
UCH	PF00443	363 - 958	9.3e-72	Ubiquitin carboxyl-terminal hydrolase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006941)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g20680 FvH4_6g20680 FvH4_6g20680
malus_domestica	MD00G1072700.v1.1 MD12G1043100.v1.1 MD14G1042200.v1.1
prunus_persica	Prupe.7G091700_v2.0.a1 Prupe.7G091700_v2.0.a1 Prupe.7G091700_v2.0.a1 Prupe.7G091700_v2.0.a1
pyrus_communis	pycom12g03720 pycom14g03580
rosa_chinensis	RchiOBHm_Chr3g0476581
rosa_laevigata	RLG00000001984 RLG00000023761
rosa_multiflora	Rmu_sc0008241.1_g000007 Rmu_sc0020945.1_g000001
rosa_roxburghii	Rroxscaffold_6G00405190
rosa_rugosa	Rorug03G0155400
rosa_samantha	Rh3AG206000 Rh3BG238600 Rh3CG232300 Rh3DG232200 Rh7DG310400
rosa_wichuraiana	Rw3G018760 Rw7G026340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	492
Acc36I	ACCTGC	1 cut(s)	2525
AccB1I	GGYRCC	1 cut(s)	1705
AccB7I	CCANNNNNTGG	2 cut(s)	187, 1141
AccBSI	CCGCTC	1 cut(s)	246
AccII	CGCG	4 cut(s)	55, 129, 516, 552
AclWI	GGATC	4 cut(s)	1737, 1823, 2035, 2546
AcsI	RAATTY	3 cut(s)	472, 676, 2397
AcuI	CTGAAG	1 cut(s)	2151
AcyI	GRCGYC	3 cut(s)	210, 450, 489
AfeI	AGCGCT	1 cut(s)	153
AfiI	CCNNNNNNNGG	6 cut(s)	187, 345, 1141, 1715, 1716, 2523
AflII	CTTAAG	2 cut(s)	1744, 1762
AflIII	ACRYGT	1 cut(s)	2712
AgsI	TTSAA	8 cut(s)	478, 497, 577, 872, 1222, 1306, 1436, 1629
AjiI	CACGTC	1 cut(s)	1942
AjnI	CCWGG	5 cut(s)	665, 1273, 1362, 1710, 2457
AjuI	GAANNNNNNNTTGG	2 cut(s)	823, 855
AleI	CACNNNNGTG	1 cut(s)	2739
Alw26I	GTCTC	6 cut(s)	35, 724, 1397, 1953, 2308, 2831
AlwI	GGATC	4 cut(s)	1737, 1823, 2035, 2546
Aor51HI	AGCGCT	1 cut(s)	153
AoxI	GGCC	5 cut(s)	732, 1081, 1283, 2426, 2525
ApeKI	GCWGC	3 cut(s)	581, 2258, 2855
ApoI	RAATTY	3 cut(s)	472, 676, 2397
ArsI	GACNNNNNNTTYG	4 cut(s)	182, 214, 1633, 1665
Asp700I	GAANNNNTTC	1 cut(s)	2594
AspLEI	GCGC	6 cut(s)	57, 131, 154, 255, 516, 554
AspS9I	GGNCC	7 cut(s)	220, 388, 529, 732, 1657, 2343, 2489
AsuHPI	GGTGA	4 cut(s)	170, 1487, 1874, 2795
AsuNHI	GCTAGC	1 cut(s)	2537
AvaII	GGWCC	6 cut(s)	220, 388, 529, 1657, 2343, 2489
AxyI	CCTNAGG	1 cut(s)	1078
BaeGI	GKGCMC	1 cut(s)	1710
BanI	GGYRCC	1 cut(s)	1705
BanII	GRGCYC	1 cut(s)	1273
BbsI	GAAGAC	1 cut(s)	2274
BbvCI	CCTCAGC	1 cut(s)	2529
BbvI	GCAGC	3 cut(s)	593, 2270, 2842
BceAI	ACGGC	4 cut(s)	26, 301, 313, 578
BcgI	CGANNNNNNTGC	4 cut(s)	103, 137, 702, 736
BciT130I	CCWGG	5 cut(s)	667, 1275, 1364, 1712, 2459
BclI	TGATCA	1 cut(s)	1851
BcoDI	GTCTC	6 cut(s)	35, 724, 1397, 1953, 2308, 2831
BfaI	CTAG	8 cut(s)	1094, 1175, 1214, 1460, 1823, 2139, 2538, 2627
BfmI	CTRYAG	5 cut(s)	340, 1060, 1948, 2262, 2872
BfoI	RGCGCY	2 cut(s)	155, 256
BfrI	CTTAAG	2 cut(s)	1744, 1762
BfuAI	ACCTGC	1 cut(s)	2525
BglII	AGATCT	1 cut(s)	1402
BisI	GCNGC	7 cut(s)	53, 138, 453, 456, 582, 2259, 2856
BlsI	GCNGC	7 cut(s)	54, 139, 454, 457, 583, 2260, 2857
BmcAI	AGTACT	1 cut(s)	2058
Bme1390I	CCNGG	5 cut(s)	667, 1275, 1364, 1712, 2459
Bme18I	GGWCC	6 cut(s)	220, 388, 529, 1657, 2343, 2489
BmgBI	CACGTC	1 cut(s)	1942
BmgT120I	GGNCC	7 cut(s)	220, 388, 529, 732, 1657, 2343, 2489
BmiI	GGNNCC	7 cut(s)	196, 221, 389, 531, 1272, 1293, 1707
BmrFI	CCNGG	5 cut(s)	667, 1275, 1364, 1712, 2459
BmsI	GCATC	5 cut(s)	1671, 2064, 2077, 2140, 2170
BmtI	GCTAGC	1 cut(s)	2541
BpiI	GAAGAC	1 cut(s)	2274
BplI	GAGNNNNNCTC	2 cut(s)	2413, 2445
BpmI	CTGGAG	2 cut(s)	1257, 2103
Bpu10I	CCTNAGC	3 cut(s)	1440, 1661, 2529
BpuEI	CTTGAG	2 cut(s)	1498, 2415
BsaBI	GATNNNNATC	1 cut(s)	1407
BsaHI	GRCGYC	3 cut(s)	210, 450, 489
BsaI	GGTCTC	2 cut(s)	1397, 2308
BsaJI	CCNNGG	9 cut(s)	186, 525, 666, 883, 1362, 1534, 1710, 1711, 2555
BsaWI	WCCGGW	1 cut(s)	1185
Bsc4I	CCNNNNNNNGG	6 cut(s)	187, 345, 1141, 1715, 1716, 2523
Bse1I	ACTGG	8 cut(s)	936, 1093, 1286, 2086, 2119, 2233, 2648, 2695
Bse21I	CCTNAGG	1 cut(s)	1078
Bse3DI	GCAATG	3 cut(s)	316, 385, 2029
Bse8I	GATNNNNATC	1 cut(s)	1407
BseBI	CCWGG	5 cut(s)	667, 1275, 1364, 1712, 2459
BseDI	CCNNGG	9 cut(s)	186, 525, 666, 883, 1362, 1534, 1710, 1711, 2555
BseGI	GGATG	6 cut(s)	961, 1131, 1393, 1450, 2155, 2212
BseJI	GATNNNNATC	1 cut(s)	1407
BseLI	CCNNNNNNNGG	6 cut(s)	187, 345, 1141, 1715, 1716, 2523
BseMI	GCAATG	3 cut(s)	316, 385, 2029
BseMII	CTCAG	3 cut(s)	1782, 2543, 2559
BseNI	ACTGG	8 cut(s)	936, 1093, 1286, 2086, 2119, 2233, 2648, 2695
BseRI	GAGGAG	8 cut(s)	63, 66, 85, 383, 934, 1080, 1273, 2437
BseSI	GKGCMC	1 cut(s)	1710
BseXI	GCAGC	3 cut(s)	593, 2270, 2842
BseYI	CCCAGC	2 cut(s)	148, 249
BsgI	GTGCAG	1 cut(s)	633
Bsh1236I	CGCG	4 cut(s)	55, 129, 516, 552
BshFI	GGCC	5 cut(s)	734, 1083, 1285, 2428, 2527
BshNI	GGYRCC	1 cut(s)	1705
BsiSI	CCGG	2 cut(s)	1186, 2393
BslFI	GGGAC	8 cut(s)	26, 103, 233, 515, 791, 1687, 1891, 1958
BslI	CCNNNNNNNGG	6 cut(s)	187, 345, 1141, 1715, 1716, 2523
BsmAI	GTCTC	6 cut(s)	35, 724, 1397, 1953, 2308, 2831
BsmBI	CGTCTC	2 cut(s)	35, 2831
BsmFI	GGGAC	8 cut(s)	26, 103, 233, 515, 791, 1687, 1891, 1958
BsnI	GGCC	5 cut(s)	734, 1083, 1285, 2428, 2527
Bso31I	GGTCTC	2 cut(s)	1397, 2308
Bsp1286I	GDGCHC	2 cut(s)	1273, 1710
Bsp1407I	TGTACA	2 cut(s)	393, 2448
Bsp19I	CCATGG	2 cut(s)	186, 883
BspANI	GGCC	5 cut(s)	734, 1083, 1285, 2428, 2527
BspCNI	CTCAG	3 cut(s)	1783, 2542, 2560
BspFNI	CGCG	4 cut(s)	55, 129, 516, 552
BspHI	TCATGA	2 cut(s)	807, 2653
BspLI	GGNNCC	7 cut(s)	196, 221, 389, 531, 1272, 1293, 1707
BspMI	ACCTGC	1 cut(s)	2525
BspOI	GCTAGC	1 cut(s)	2541
BspPI	GGATC	4 cut(s)	1737, 1823, 2035, 2546
BspQI	GCTCTTC	1 cut(s)	161
BspT107I	GGYRCC	1 cut(s)	1705
BspTI	CTTAAG	2 cut(s)	1744, 1762
BspTNI	GGTCTC	2 cut(s)	1397, 2308
BsrBI	CCGCTC	1 cut(s)	246
BsrDI	GCAATG	3 cut(s)	316, 385, 2029
BsrGI	TGTACA	2 cut(s)	393, 2448
BsrI	ACTGG	8 cut(s)	936, 1093, 1286, 2086, 2119, 2233, 2648, 2695
BssECI	CCNNGG	9 cut(s)	186, 525, 666, 883, 1362, 1534, 1710, 1711, 2555
BssNI	GRCGYC	3 cut(s)	210, 450, 489
BssT1I	CCWWGG	5 cut(s)	186, 525, 883, 1534, 2555
Bst2UI	CCWGG	5 cut(s)	667, 1275, 1364, 1712, 2459
Bst4CI	ACNGT	7 cut(s)	194, 1127, 1620, 1657, 1699, 1705, 1952
Bst6I	CTCTTC	3 cut(s)	161, 492, 2829
BstACI	GRCGYC	3 cut(s)	210, 450, 489
BstAFI	CTTAAG	2 cut(s)	1744, 1762
BstAUI	TGTACA	2 cut(s)	393, 2448
BstC8I	GCNNGC	7 cut(s)	50, 127, 1233, 1424, 1570, 2535, 2539
BstDEI	CTNAG	9 cut(s)	1078, 1440, 1661, 1791, 1969, 2316, 2381, 2529, 2568
BstDSI	CCRYGG	2 cut(s)	186, 883
BstEII	GGTNACC	2 cut(s)	1862, 1884
BstENI	CCTNNNNNAGG	1 cut(s)	2521
BstF5I	GGATG	6 cut(s)	961, 1131, 1393, 1450, 2155, 2212
BstFNI	CGCG	4 cut(s)	55, 129, 516, 552
BstH2I	RGCGCY	2 cut(s)	155, 256
BstHHI	GCGC	6 cut(s)	57, 131, 154, 255, 516, 554
BstMAI	GTCTC	6 cut(s)	35, 724, 1397, 1953, 2308, 2831
BstMWI	GCNNNNNNNGC	9 cut(s)	54, 137, 252, 306, 1277, 1325, 1569, 2382, 2517
BstNI	CCWGG	5 cut(s)	667, 1275, 1364, 1712, 2459
BstNSI	RCATGY	2 cut(s)	2376, 2716
BstPI	GGTNACC	2 cut(s)	1862, 1884
BstSCI	CCNGG	5 cut(s)	665, 1273, 1362, 1710, 2457
BstSFI	CTRYAG	5 cut(s)	340, 1060, 1948, 2262, 2872
BstSLI	GKGCMC	1 cut(s)	1710
BstUI	CGCG	4 cut(s)	55, 129, 516, 552
BstV1I	GCAGC	3 cut(s)	593, 2270, 2842
BstV2I	GAAGAC	1 cut(s)	2274
BstX2I	RGATCY	5 cut(s)	1402, 1729, 1828, 2027, 2551
BstXI	CCANNNNNNTGG	1 cut(s)	1340
BstYI	RGATCY	5 cut(s)	1402, 1729, 1828, 2027, 2551
Bsu36I	CCTNAGG	1 cut(s)	1078
BsuRI	GGCC	5 cut(s)	734, 1083, 1285, 2428, 2527
BtgI	CCRYGG	2 cut(s)	186, 883
BtgZI	GCGATG	2 cut(s)	939, 1694
BtrI	CACGTC	1 cut(s)	1942
BtsCI	GGATG	6 cut(s)	961, 1131, 1393, 1450, 2155, 2212
BtsI	GCAGTG	2 cut(s)	396, 1749
BtsIMutI	CAGTG	5 cut(s)	396, 1132, 1293, 1345, 1749
BveI	ACCTGC	1 cut(s)	2525
Cac8I	GCNNGC	7 cut(s)	50, 127, 1233, 1424, 1570, 2535, 2539
CciI	TCATGA	2 cut(s)	807, 2653
CfoI	GCGC	6 cut(s)	57, 131, 154, 255, 516, 554
Cfr13I	GGNCC	7 cut(s)	220, 388, 529, 732, 1657, 2343, 2489
CseI	GACGC	2 cut(s)	218, 458
CspCI	CAANNNNNGTGG	4 cut(s)	1200, 1235, 1269, 1304
CviAII	CATG	9 cut(s)	187, 808, 884, 1355, 1397, 1963, 2373, 2654, 2713
DdeI	CTNAG	9 cut(s)	1078, 1440, 1661, 1791, 1969, 2316, 2381, 2529, 2568
Eam1104I	CTCTTC	3 cut(s)	161, 492, 2829
EarI	CTCTTC	3 cut(s)	161, 492, 2829
EciI	GGCGGA	1 cut(s)	221
Eco130I	CCWWGG	5 cut(s)	186, 525, 883, 1534, 2555
Eco147I	AGGCCT	3 cut(s)	1083, 2428, 2527
Eco24I	GRGCYC	1 cut(s)	1273
Eco31I	GGTCTC	2 cut(s)	1397, 2308
Eco47I	GGWCC	6 cut(s)	220, 388, 529, 1657, 2343, 2489
Eco47III	AGCGCT	1 cut(s)	153
Eco57I	CTGAAG	1 cut(s)	2151
Eco81I	CCTNAGG	1 cut(s)	1078
Eco91I	GGTNACC	2 cut(s)	1862, 1884
EcoNI	CCTNNNNNAGG	1 cut(s)	2521
EcoO109I	RGGNCCY	3 cut(s)	220, 388, 732
EcoO65I	GGTNACC	2 cut(s)	1862, 1884
EcoRII	CCWGG	5 cut(s)	665, 1273, 1362, 1710, 2457
EcoT14I	CCWWGG	5 cut(s)	186, 525, 883, 1534, 2555
EcoT22I	ATGCAT	1 cut(s)	2092
EcoT38I	GRGCYC	1 cut(s)	1273
ErhI	CCWWGG	5 cut(s)	186, 525, 883, 1534, 2555
Esp3I	CGTCTC	2 cut(s)	35, 2831
FaeI	CATG	9 cut(s)	190, 811, 887, 1358, 1400, 1966, 2376, 2657, 2716
FalI	AAGNNNNNCTT	2 cut(s)	1215, 1247
FaqI	GGGAC	8 cut(s)	26, 103, 233, 515, 791, 1687, 1891, 1958
FatI	CATG	9 cut(s)	186, 807, 883, 1354, 1396, 1962, 2372, 2653, 2712
FauI	CCCGC	1 cut(s)	266
FauNDI	CATATG	1 cut(s)	2860
FbaI	TGATCA	1 cut(s)	1851
Fnu4HI	GCNGC	7 cut(s)	53, 138, 453, 456, 582, 2259, 2856
FokI	GGATG	6 cut(s)	968, 1118, 1400, 1457, 2162, 2219
FriOI	GRGCYC	1 cut(s)	1273
Fsp4HI	GCNGC	7 cut(s)	53, 138, 453, 456, 582, 2259, 2856
FspBI	CTAG	8 cut(s)	1094, 1175, 1214, 1460, 1823, 2139, 2538, 2627
GlaI	GCGC	6 cut(s)	56, 130, 153, 254, 515, 553
GluI	GCNGC	7 cut(s)	53, 138, 453, 456, 582, 2259, 2856
GsaI	CCCAGC	2 cut(s)	152, 253
GsuI	CTGGAG	2 cut(s)	1257, 2103
HaeII	RGCGCY	2 cut(s)	155, 256
HaeIII	GGCC	5 cut(s)	734, 1083, 1285, 2428, 2527
HapII	CCGG	2 cut(s)	1186, 2393
HgaI	GACGC	2 cut(s)	218, 458
HhaI	GCGC	6 cut(s)	57, 131, 154, 255, 516, 554
Hin1I	GRCGYC	3 cut(s)	210, 450, 489
Hin1II	CATG	9 cut(s)	190, 811, 887, 1358, 1400, 1966, 2376, 2657, 2716
Hin6I	GCGC	6 cut(s)	55, 129, 152, 253, 514, 552
HinP1I	GCGC	6 cut(s)	55, 129, 152, 253, 514, 552
HpaII	CCGG	2 cut(s)	1186, 2393
HphI	GGTGA	4 cut(s)	170, 1487, 1874, 2795
Hpy166II	GTNNAC	4 cut(s)	178, 396, 1820, 2669
Hpy188III	TCNNGA	7 cut(s)	808, 1460, 2050, 2432, 2654, 2660, 2845
Hpy8I	GTNNAC	4 cut(s)	178, 396, 1820, 2669
HpyAV	CCTTC	9 cut(s)	208, 223, 346, 583, 622, 1183, 1635, 2387, 2467
HpyCH4III	ACNGT	7 cut(s)	194, 1127, 1620, 1657, 1699, 1705, 1952
HpyCH4IV	ACGT	4 cut(s)	489, 542, 597, 1941
HpyF10VI	GCNNNNNNNGC	9 cut(s)	54, 137, 252, 306, 1277, 1325, 1569, 2382, 2517
HpyF3I	CTNAG	9 cut(s)	1078, 1440, 1661, 1791, 1969, 2316, 2381, 2529, 2568
HpySE526I	ACGT	4 cut(s)	489, 542, 597, 1941
Hsp92I	GRCGYC	3 cut(s)	210, 450, 489
Hsp92II	CATG	9 cut(s)	190, 811, 887, 1358, 1400, 1966, 2376, 2657, 2716
HspAI	GCGC	6 cut(s)	55, 129, 152, 253, 514, 552
Ksp22I	TGATCA	1 cut(s)	1851
LguI	GCTCTTC	1 cut(s)	161
LmnI	GCTCC	7 cut(s)	30, 108, 251, 921, 1276, 1297, 1333
Lsp1109I	GCAGC	3 cut(s)	593, 2270, 2842
LweI	GCATC	5 cut(s)	1671, 2064, 2077, 2140, 2170
MaeI	CTAG	8 cut(s)	1094, 1175, 1214, 1460, 1823, 2139, 2538, 2627
MaeII	ACGT	4 cut(s)	489, 542, 597, 1941
MaeIII	GTNAC	7 cut(s)	1620, 1699, 1862, 1884, 1915, 2039, 2756
MbiI	CCGCTC	1 cut(s)	246
MflI	RGATCY	5 cut(s)	1402, 1729, 1828, 2027, 2551
MhlI	GDGCHC	2 cut(s)	1273, 1710
MlyI	GAGTC	4 cut(s)	873, 953, 1505, 1910
MmeI	TCCRAC	2 cut(s)	1319, 1365
Mph1103I	ATGCAT	1 cut(s)	2092
MroXI	GAANNNNTTC	1 cut(s)	2594
MseI	TTAA	9 cut(s)	987, 1025, 1035, 1310, 1745, 1763, 2243, 2403, 2616
MslI	CAYNNNNRTG	1 cut(s)	2739
MspA1I	CMGCKG	3 cut(s)	458, 850, 2855
MspCI	CTTAAG	2 cut(s)	1744, 1762
MspI	CCGG	2 cut(s)	1186, 2393
MspR9I	CCNGG	5 cut(s)	667, 1275, 1364, 1712, 2459
MvaI	CCWGG	5 cut(s)	667, 1275, 1364, 1712, 2459
MvnI	CGCG	4 cut(s)	55, 129, 516, 552
MwoI	GCNNNNNNNGC	9 cut(s)	54, 137, 252, 306, 1277, 1325, 1569, 2382, 2517
NcoI	CCATGG	2 cut(s)	186, 883
NdeI	CATATG	1 cut(s)	2860
NheI	GCTAGC	1 cut(s)	2537
NlaIII	CATG	9 cut(s)	190, 811, 887, 1358, 1400, 1966, 2376, 2657, 2716
NlaIV	GGNNCC	7 cut(s)	196, 221, 389, 531, 1272, 1293, 1707
NmuCI	GTSAC	3 cut(s)	1699, 1862, 2756
NsiI	ATGCAT	1 cut(s)	2092
NspI	RCATGY	2 cut(s)	2376, 2716
OliI	CACNNNNGTG	1 cut(s)	2739
PagI	TCATGA	2 cut(s)	807, 2653
PasI	CCCWGGG	1 cut(s)	1711
PceI	AGGCCT	3 cut(s)	1083, 2428, 2527
PciI	ACATGT	1 cut(s)	2712
PciSI	GCTCTTC	1 cut(s)	161
PdmI	GAANNNNTTC	1 cut(s)	2594
PflMI	CCANNNNNTGG	2 cut(s)	187, 1141
PkrI	GCNGC	7 cut(s)	54, 139, 454, 457, 583, 2260, 2857
PleI	GAGTC	4 cut(s)	873, 952, 1505, 1909
PpsI	GAGTC	4 cut(s)	873, 952, 1505, 1909
PpuMI	RGGWCCY	2 cut(s)	220, 388
PscI	ACATGT	1 cut(s)	2712
Psp5II	RGGWCCY	2 cut(s)	220, 388
Psp6I	CCWGG	5 cut(s)	665, 1273, 1362, 1710, 2457
PspEI	GGTNACC	2 cut(s)	1862, 1884
PspFI	CCCAGC	2 cut(s)	148, 249
PspGI	CCWGG	5 cut(s)	665, 1273, 1362, 1710, 2457
PspN4I	GGNNCC	7 cut(s)	196, 221, 389, 531, 1272, 1293, 1707
PspPI	GGNCC	7 cut(s)	220, 388, 529, 732, 1657, 2343, 2489
PspPPI	RGGWCCY	2 cut(s)	220, 388
PsuI	RGATCY	5 cut(s)	1402, 1729, 1828, 2027, 2551
PvuII	CAGCTG	2 cut(s)	850, 2855
RseI	CAYNNNNRTG	1 cut(s)	2739
SapI	GCTCTTC	1 cut(s)	161
SaqAI	TTAA	9 cut(s)	987, 1025, 1035, 1310, 1745, 1763, 2243, 2403, 2616
SatI	GCNGC	7 cut(s)	53, 138, 453, 456, 582, 2259, 2856
Sau96I	GGNCC	7 cut(s)	220, 388, 529, 732, 1657, 2343, 2489
ScaI	AGTACT	1 cut(s)	2058
SchI	GAGTC	4 cut(s)	873, 953, 1505, 1910
ScrFI	CCNGG	5 cut(s)	667, 1275, 1364, 1712, 2459
SduI	GDGCHC	2 cut(s)	1273, 1710
SfaNI	GCATC	5 cut(s)	1671, 2064, 2077, 2140, 2170
SfcI	CTRYAG	5 cut(s)	340, 1060, 1948, 2262, 2872
SinI	GGWCC	6 cut(s)	220, 388, 529, 1657, 2343, 2489
SmiMI	CAYNNNNRTG	1 cut(s)	2739
SmlI	CTYRAG	4 cut(s)	1513, 1744, 1762, 2430
SmoI	CTYRAG	4 cut(s)	1513, 1744, 1762, 2430
SseBI	AGGCCT	3 cut(s)	1083, 2428, 2527
SspI	AATATT	3 cut(s)	742, 838, 1484
SspMI	CTAG	8 cut(s)	1094, 1175, 1214, 1460, 1823, 2139, 2538, 2627
StuI	AGGCCT	3 cut(s)	1083, 2428, 2527
StyD4I	CCNGG	5 cut(s)	665, 1273, 1362, 1710, 2457
StyI	CCWWGG	5 cut(s)	186, 525, 883, 1534, 2555
TaaI	ACNGT	7 cut(s)	194, 1127, 1620, 1657, 1699, 1705, 1952
TaiI	ACGT	4 cut(s)	492, 545, 600, 1944
TaqI	TCGA	2 cut(s)	225, 1613
TatI	WGTACW	5 cut(s)	393, 466, 1819, 2056, 2448
TauI	GCSGC	4 cut(s)	55, 140, 455, 458
Tru1I	TTAA	9 cut(s)	987, 1025, 1035, 1310, 1745, 1763, 2243, 2403, 2616
Tru9I	TTAA	9 cut(s)	987, 1025, 1035, 1310, 1745, 1763, 2243, 2403, 2616
TscAI	CASTG	5 cut(s)	403, 1132, 1293, 1345, 1756
TseFI	GTSAC	3 cut(s)	1699, 1862, 2756
TseI	GCWGC	3 cut(s)	581, 2258, 2855
Tsp45I	GTSAC	3 cut(s)	1699, 1862, 2756
TspGWI	ACGGA	3 cut(s)	17, 380, 753
TspRI	CASTG	5 cut(s)	403, 1132, 1293, 1345, 1756
Van91I	CCANNNNNTGG	2 cut(s)	187, 1141
Vha464I	CTTAAG	2 cut(s)	1744, 1762
VpaK11BI	GGWCC	6 cut(s)	220, 388, 529, 1657, 2343, 2489
XagI	CCTNNNNNAGG	1 cut(s)	2521
XapI	RAATTY	3 cut(s)	472, 676, 2397
XbaI	TCTAGA	1 cut(s)	1459
XceI	RCATGY	2 cut(s)	2376, 2716
XcmI	CCANNNNNNNNNTGG	2 cut(s)	1138, 2499
XmnI	GAANNNNTTC	1 cut(s)	2594
XspI	CTAG	8 cut(s)	1094, 1175, 1214, 1460, 1823, 2139, 2538, 2627
ZraI	GACGTC	1 cut(s)	490
ZrmI	AGTACT	1 cut(s)	2058
Zsp2I	ATGCAT	1 cut(s)	2092

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.