Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3C

Orthogroup ID

OG0006941

Physical Location & Seq

Genomic Coordinates Forward (+)

21962590 .. 21971145

Gene Structure 8556 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3CG232300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2736 bp

ATGACCCAACTCTCGGAAAAGCTCCGTCTGTGTCTTCTCCTTCTTCTGTACAATCCAACCCGGTTTCTCTCTCCTCCTAAGCAGCTCTTGGCCACTCTCTCCGTCTCCACGCTCCACCTCTGCAAGTCCCTCGCACGCGCCCTCGCCTCCAAAACCCTAGCCCTCTTCTTCTTCTTCTTCTTCTTCGCCATGGACGACCCCTTCCCCTTCGCCTCTGCCGACGGCGACAACGACGGCTGGGACTTCGACCTCCAGTCCCGCAACCGCGCCCAGCGCCCCCGCCTGCTCCACGACTACGACGACGACGACGACGTTTCCGACAATGCCGTCGATAAGGTCTACCTCGTTCCCTACAGGTGGTGGAAGGAGGTTGGGACCGAAGACGATGATCGTGGCGAAGGGGTATTGTACAGCACTTCGCCGGAGGAAGACGACTCCGGCTCGGAAATTGTGTTGAGTTTGAGGAAGAGGGACTCTGCTGAAGAAGGGTTTTCAGGTCGCGAGTATGCCTTGGTCCCTGAAGCGACATGGTGCCGCGCACTCATACGGCATTATGATTTTAATACAGCAGCAATGGATAATGTGAGCTTCTTTGGTGACGAAGAGTTTTTAAAGGATGTCTTTTCTTTACAAATTAGGCTCTTTGTTTCCTGGGAAACAAATTCATTGGTTGTAAAGATCAGCCAAAAGGATAATGCGGTTGATTCTTTCAAGAGAGCCTGCATTATTTTCAGTTCAGAGCCCGAGCCATTGCATATTTGGGACTTCTCAGGGCAGATAACCCAATTTTTCATGAATGACAGAATTAGTTTGCCAAATGACATTCCTGGACAACTGAACAAAGAGATTGTCCTGGAATTGCATCTTCATGGATTTTCAGAGGTCAGAGGTTGGAGGAGTGATGACATGGCTGAAAACCACTTCAGTATTGATGGTTGTATTAGTGGTGGCTCTTCTAAAATGAATGGGAACATTTACTACGTCAATCCCTACTTAAACTCAAGCAACTCCTGGCGAAGTGCTGTTATGTATAGAGGAGTTGGTTCTTTAGGCTTAACTGGTATAAAGAATCTTGGGAATACTTGTTTTATGAACAGTGCAATCCAATGTTTGGTGCACACTCCAAAGCTTGTTGACTATTTTCTAGGAGATTACCGGAAGGACATGAACTATCAGAACCCATTGGGAATGAAAGGAGAGCTTGCTTTTGCATTTGGAGAATTATTGAGGAGATTATGGGCTCCAGGTGCAAGGCCAGTGGCTCCAAGAATGTTCAAGCAAAAACTTGCCAGTTTTGCTCCTCAATTCAGTGGCTATAATCAACATGATTCCCAGGAACTTCTTGCTTTTTTGCTGGATGGTCTCCATGAAGATCTAAATCGTGTGAAATGCAAGCCATATTTTGAAGCTAGAGATGCAGAGGGCCGTCCAGATGAAGAAGTGGCGGAAGAATATTGGCGGAATCACCTTGCTCGCAATGATTCCATTATTGTTAATGCATACCAGGGTCAATACCGGTCAAAATTGGTTTGCCCCGATTGCAACAAGGTGTCCATTACATTTGACCCATTTATGTATCTATCACTGCCACTACCTTCTACAACAATGCGGAGTATGACTTTGACGGTTTTAAGCACAGATGGTGCTGCGTTGCCTACTACATTTACTGTAACAGTGCCAAAGAGTGGGACGCTCGTGGATCTTACTGAAGCCTTAAGAATTGCCTGTTCTCTAAGAGATGATGAAACCCTGTTGGTGGCTGAGATATACCAGTGTCGCATATTTCGTCTATTGGAGGATCCATCTGATTCATTAGCCTTTGTTAGAGACGCTGACAAACTGGTTGCTTATCGCTTACCAAAAGATTTTGAGCGATCGCACTTGGTTGTGTTTCTTCATCAGGAGAAGGGAAAGTATTACTATAATCAAGACACAATTGGTATCCCACTTTTAGCAAGGGTGTCTGATCCTTGTTATGGATCTGATATTCGCAACGAATTCCTAAATAATTTAAATCCATTCTTGAAGCCTGATGGAGATATATCAGATGTTTTTGATGATGATTCTGGAAACTGTGCTAATGAAGACTCTAACAAGGAGGATGACAGTAGTCCTACAGTTTGGGATAATGATTCTGACACAGACAGGGGAACAATGGGTGAAGTGCTGTTGGATACTGACTTCAAATTTTACTTAGCAGATACAAGAAAGGAAATAGAGTTGAATCAGCTGATAGAGGTCTCACGGTTGCCTGTGATACCAAGGCCTCAGATACTGGAGGTGATTGTTTTATGGACAGATGAGATGATTAACAAGTATGATACACGCCTTCTAAACTCTTTGCCTGAGGTCTTCAACATTTTCACGAGTAGTGAAGAATCTGTTTCCCTGTACAAATGCCTTGAGGCCTTTCTGAAGGAAGAACCTCTAGGACCTGAAGACATGTGGTTCTGCCCTAGCTGCAAGACTCCTCGGCAAGCCAGCAAAAAGTTAGATCTTTGGAGATTGCCTGAGATATTGGTTATTCATCTGAAAAGATTCTCGTATGACCATTATTTTAAGAACAAGCTAGAAACTTTAGTTGATTTTCCCATTTATGATATGGACATCTCAACATACATTACCCACCGCAGTAACCAGTTATCCAGTCGATACATGTTGTACGCAATCAGTAATCACTATGGTGGCTTGGGTGGTGGTCACTATACGGCATTTGTTCATGTAAGTGTTGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04137 map04137

Pfam Domains

Protein Families

UCH

Protein Analysis

911

Amino Acids

104.13

Weight (kDa)

4.91

Isoelectric Point (pI)

43.0

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ubiquitin_UBP8	PF25242	212 - 266	3.6e-30	UBP8-like, ubiquitin-like domain
UCH	PF00443	353 - 907	3e-62	Ubiquitin carboxyl-terminal hydrolase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006941)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g20680 FvH4_6g20680 FvH4_6g20680
malus_domestica	MD00G1072700.v1.1 MD12G1043100.v1.1 MD14G1042200.v1.1
prunus_persica	Prupe.7G091700_v2.0.a1 Prupe.7G091700_v2.0.a1 Prupe.7G091700_v2.0.a1 Prupe.7G091700_v2.0.a1
pyrus_communis	pycom12g03720 pycom14g03580
rosa_chinensis	RchiOBHm_Chr3g0476581
rosa_laevigata	RLG00000001984 RLG00000023761
rosa_multiflora	Rmu_sc0008241.1_g000007 Rmu_sc0020945.1_g000001
rosa_roxburghii	Rroxscaffold_6G00405190
rosa_rugosa	Rorug03G0155400
rosa_samantha	Rh3AG206000 Rh3BG238600 Rh3CG232300 Rh3DG232200 Rh7DG310400
rosa_wichuraiana	Rw3G018760 Rw7G026340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	326
AccB1I	GGYRCC	1 cut(s)	531
AccB7I	CCANNNNNTGG	2 cut(s)	1111, 1685
AccI	GTMKAC	1 cut(s)	339
AccII	CGCG	4 cut(s)	138, 267, 501, 537
AciI	CCGC	9 cut(s)	259, 265, 280, 535, 698, 1445, 1459, 1609, 2629
AclWI	GGATC	5 cut(s)	1707, 1793, 1806, 1961, 1987
AcoI	YGGCCR	1 cut(s)	90
AcsI	RAATTY	3 cut(s)	661, 1997, 2186
AcuI	CTGAAG	6 cut(s)	501, 540, 907, 1728, 2435, 2457
AfaI	GTAC	4 cut(s)	50, 410, 2393, 2663
AfiI	CCNNNNNNNGG	6 cut(s)	13, 357, 1111, 1685, 1756, 1976
AflII	CTTAAG	1 cut(s)	1714
AflIII	ACRYGT	2 cut(s)	2442, 2655
AgeI	ACCGGT	1 cut(s)	1515
AgsI	TTSAA	7 cut(s)	712, 1276, 1406, 2026, 2185, 2224, 2356
AhdI	GACNNNNNGTC	1 cut(s)	253
AjnI	CCWGG	7 cut(s)	650, 826, 852, 1010, 1243, 1332, 1503
AleI	CACNNNNGTG	1 cut(s)	2682
AluBI	AGCT	9 cut(s)	22, 85, 588, 1129, 1201, 1409, 2230, 2460, 2569
AluI	AGCT	9 cut(s)	22, 85, 588, 1129, 1201, 1409, 2230, 2460, 2569
Alw21I	GWGCWC	1 cut(s)	1119
Alw26I	GTCTC	4 cut(s)	109, 1367, 1821, 2245
Alw44I	GTGCAC	1 cut(s)	1115
AlwI	GGATC	5 cut(s)	1707, 1793, 1806, 1961, 1987
AlwNI	CAGNNNCTG	1 cut(s)	2275
Ama87I	CYCGRG	1 cut(s)	743
AoxI	GGCC	5 cut(s)	90, 1253, 1423, 2264, 2406
ApaLI	GTGCAC	1 cut(s)	1115
ApeKI	GCWGC	4 cut(s)	82, 569, 1646, 2460
ApoI	RAATTY	3 cut(s)	661, 1997, 2186
ArsI	GACNNNNNNTTYG	2 cut(s)	834, 866
AsiGI	ACCGGT	1 cut(s)	1515
AsiSI	GCGATCGC	1 cut(s)	1877
Asp700I	GAANNNNTTC	1 cut(s)	2537
AspLEI	GCGC	4 cut(s)	140, 269, 276, 539
AspS9I	GGNCC	4 cut(s)	375, 514, 1423, 2432
AsuC2I	CCSGG	1 cut(s)	61
AsuHPI	GGTGA	4 cut(s)	608, 1457, 2171, 2293
AvaI	CYCGRG	1 cut(s)	743
AvaII	GGWCC	3 cut(s)	375, 514, 2432
AxyI	CCTNAGG	1 cut(s)	2346
BaeGI	GKGCMC	1 cut(s)	1119
BalI	TGGCCA	1 cut(s)	92
BamHI	GGATCC	1 cut(s)	1798
BanI	GGYRCC	1 cut(s)	531
BanII	GRGCYC	2 cut(s)	744, 1243
BauI	CACGAG	2 cut(s)	1694, 2365
BbsI	GAAGAC	6 cut(s)	26, 387, 435, 2091, 2344, 2445
Bbv12I	GWGCWC	1 cut(s)	1119
BbvI	GCAGC	4 cut(s)	94, 581, 1633, 2447
BccI	CCATC	5 cut(s)	926, 1352, 1634, 1810, 2027
BceAI	ACGGC	6 cut(s)	238, 250, 311, 563, 1410, 2724
BcgI	CGANNNNNNTGC	2 cut(s)	112, 146
BciT130I	CCWGG	7 cut(s)	652, 828, 854, 1012, 1245, 1334, 1505
BciVI	GTATCC	2 cut(s)	1952, 2167
BcnI	CCSGG	1 cut(s)	61
BcoDI	GTCTC	4 cut(s)	109, 1367, 1821, 2245
BfaI	CTAG	6 cut(s)	158, 1145, 1410, 2429, 2457, 2570
BfmI	CTRYAG	2 cut(s)	352, 2115
BfoI	RGCGCY	1 cut(s)	277
BfrI	CTTAAG	1 cut(s)	1714
BfuI	GTATCC	2 cut(s)	1952, 2167
BglII	AGATCT	2 cut(s)	1372, 2494
BisI	GCNGC	5 cut(s)	83, 535, 570, 1647, 2461
BlsI	GCNGC	5 cut(s)	84, 536, 571, 1648, 2462
Bme1390I	CCNGG	8 cut(s)	61, 652, 828, 854, 1012, 1245, 1334, 1505
Bme18I	GGWCC	3 cut(s)	375, 514, 2432
BmeRI	GACNNNNNGTC	1 cut(s)	253
BmeT110I	CYCGRG	1 cut(s)	743
BmgT120I	GGNCC	4 cut(s)	375, 514, 1423, 2432
BmiI	GGNNCC	6 cut(s)	376, 516, 533, 1242, 1263, 1800
BmrFI	CCNGG	8 cut(s)	61, 652, 828, 854, 1012, 1245, 1334, 1505
BmsI	GCATC	2 cut(s)	871, 1405
BoxI	GACNNNNGTC	1 cut(s)	2109
BpiI	GAAGAC	6 cut(s)	26, 387, 435, 2091, 2344, 2445
BpmI	CTGGAG	3 cut(s)	236, 1227, 2297
Bpu10I	CCTNAGC	1 cut(s)	78
BpuEI	CTTGAG	2 cut(s)	985, 2423
BpuMI	CCSGG	1 cut(s)	61
BsaBI	GATNNNNATC	1 cut(s)	1377
BsaI	GGTCTC	2 cut(s)	1367, 2245
BsaJI	CCNNGG	7 cut(s)	189, 510, 651, 1332, 1504, 2261, 2471
BsaWI	WCCGGW	2 cut(s)	1155, 1515
Bsc4I	CCNNNNNNNGG	6 cut(s)	13, 357, 1111, 1685, 1756, 1976
Bse118I	RCCGGY	1 cut(s)	1515
Bse1I	ACTGG	9 cut(s)	253, 1063, 1256, 1290, 1771, 1845, 2280, 2638, 2646
Bse21I	CCTNAGG	1 cut(s)	2346
Bse3DI	GCAATG	3 cut(s)	579, 749, 1483
Bse8I	GATNNNNATC	1 cut(s)	1377
BseBI	CCWGG	7 cut(s)	652, 828, 854, 1012, 1245, 1334, 1505
BseDI	CCNNGG	7 cut(s)	189, 510, 651, 1332, 1504, 2261, 2471
BseGI	GGATG	3 cut(s)	622, 1363, 2107
BseJI	GATNNNNATC	1 cut(s)	1377
BseLI	CCNNNNNNNGG	6 cut(s)	13, 357, 1111, 1685, 1756, 1976
BseMI	GCAATG	3 cut(s)	579, 749, 1483
BseMII	CTCAG	5 cut(s)	783, 1752, 2282, 2337, 2502
BseNI	ACTGG	9 cut(s)	253, 1063, 1256, 1290, 1771, 1845, 2280, 2638, 2646
BseRI	GAGGAG	6 cut(s)	63, 910, 1050, 1243, 1290, 2460
BseSI	GKGCMC	1 cut(s)	1119
BseXI	GCAGC	4 cut(s)	94, 581, 1633, 2447
BseYI	CCCAGC	2 cut(s)	237, 270
Bsh1236I	CGCG	4 cut(s)	138, 267, 501, 537
Bsh1285I	CGRYCG	1 cut(s)	1877
BshFI	GGCC	5 cut(s)	92, 1255, 1425, 2266, 2408
BshNI	GGYRCC	1 cut(s)	531
BshTI	ACCGGT	1 cut(s)	1515
BsiEI	CGRYCG	1 cut(s)	1877
BsiHKAI	GWGCWC	1 cut(s)	1119
BsiHKCI	CYCGRG	1 cut(s)	743
BsiSI	CCGG	5 cut(s)	61, 422, 438, 1156, 1516
BslFI	GGGAC	8 cut(s)	112, 241, 254, 388, 485, 500, 776, 1702
BslI	CCNNNNNNNGG	6 cut(s)	13, 357, 1111, 1685, 1756, 1976
BsmAI	GTCTC	4 cut(s)	109, 1367, 1821, 2245
BsmBI	CGTCTC	2 cut(s)	109, 1821
BsmFI	GGGAC	8 cut(s)	112, 241, 254, 388, 485, 500, 776, 1702
BsnI	GGCC	5 cut(s)	92, 1255, 1425, 2266, 2408
Bso31I	GGTCTC	2 cut(s)	1367, 2245
BsoBI	CYCGRG	1 cut(s)	743
Bsp1286I	GDGCHC	3 cut(s)	744, 1119, 1243
Bsp1407I	TGTACA	3 cut(s)	48, 408, 2391
Bsp143I	GATC	9 cut(s)	388, 678, 1372, 1699, 1798, 1874, 1966, 1979, 2494
Bsp19I	CCATGG	1 cut(s)	189
Bsp68I	TCGCGA	1 cut(s)	501
BspACI	CCGC	9 cut(s)	259, 265, 280, 535, 698, 1445, 1459, 1609, 2629
BspANI	GGCC	5 cut(s)	92, 1255, 1425, 2266, 2408
BspCNI	CTCAG	5 cut(s)	782, 1753, 2281, 2338, 2503
BspFNI	CGCG	4 cut(s)	138, 267, 501, 537
BspHI	TCATGA	1 cut(s)	792
BspLI	GGNNCC	6 cut(s)	376, 516, 533, 1242, 1263, 1800
BspPI	GGATC	5 cut(s)	1707, 1793, 1806, 1961, 1987
BspQI	GCTCTTC	1 cut(s)	958
BspT107I	GGYRCC	1 cut(s)	531
BspTI	CTTAAG	1 cut(s)	1714
BspTNI	GGTCTC	2 cut(s)	1367, 2245
BsrDI	GCAATG	3 cut(s)	579, 749, 1483
BsrFI	RCCGGY	1 cut(s)	1515
BsrGI	TGTACA	3 cut(s)	48, 408, 2391
BsrI	ACTGG	9 cut(s)	253, 1063, 1256, 1290, 1771, 1845, 2280, 2638, 2646
BssAI	RCCGGY	1 cut(s)	1515
BssECI	CCNNGG	7 cut(s)	189, 510, 651, 1332, 1504, 2261, 2471
BssMI	GATC	9 cut(s)	388, 678, 1372, 1699, 1798, 1874, 1966, 1979, 2494
BssSI	CACGAG	2 cut(s)	1694, 2365
BssT1I	CCWWGG	3 cut(s)	189, 510, 2261
Bst2BI	CACGAG	2 cut(s)	1694, 2365
Bst2UI	CCWGG	7 cut(s)	652, 828, 854, 1012, 1245, 1334, 1505
Bst4CI	ACNGT	8 cut(s)	1097, 1627, 1669, 1675, 2075, 2108, 2119, 2247
Bst6I	CTCTTC	4 cut(s)	170, 461, 597, 958
BstAFI	CTTAAG	1 cut(s)	1714
BstAUI	TGTACA	3 cut(s)	48, 408, 2391
BstC8I	GCNNGC	8 cut(s)	136, 284, 721, 1203, 1394, 1474, 2478, 2482
BstDEI	CTNAG	8 cut(s)	78, 769, 1733, 1761, 2194, 2268, 2346, 2511
BstDSI	CCRYGG	1 cut(s)	189
BstF5I	GGATG	3 cut(s)	622, 1363, 2107
BstFNI	CGCG	4 cut(s)	138, 267, 501, 537
BstH2I	RGCGCY	1 cut(s)	277
BstHHI	GCGC	4 cut(s)	140, 269, 276, 539
BstKTI	GATC	9 cut(s)	391, 681, 1375, 1702, 1801, 1877, 1969, 1982, 2497
BstMAI	GTCTC	4 cut(s)	109, 1367, 1821, 2245
BstMBI	GATC	9 cut(s)	388, 678, 1372, 1699, 1798, 1874, 1966, 1979, 2494
BstMCI	CGRYCG	1 cut(s)	1877
BstMWI	GCNNNNNNNGC	6 cut(s)	273, 1247, 1295, 1415, 1539, 2460
BstNI	CCWGG	7 cut(s)	652, 828, 854, 1012, 1245, 1334, 1505
BstNSI	RCATGY	2 cut(s)	2446, 2659
BstPAI	GACNNNNGTC	1 cut(s)	2109
BstSCI	CCNGG	8 cut(s)	59, 650, 826, 852, 1010, 1243, 1332, 1503
BstSFI	CTRYAG	2 cut(s)	352, 2115
BstSLI	GKGCMC	1 cut(s)	1119
BstUI	CGCG	4 cut(s)	138, 267, 501, 537
BstV1I	GCAGC	4 cut(s)	94, 581, 1633, 2447
BstV2I	GAAGAC	6 cut(s)	26, 387, 435, 2091, 2344, 2445
BstX2I	RGATCY	5 cut(s)	1372, 1699, 1798, 1979, 2494
BstYI	RGATCY	5 cut(s)	1372, 1699, 1798, 1979, 2494
Bsu36I	CCTNAGG	1 cut(s)	2346
BsuI	GTATCC	2 cut(s)	1952, 2167
BsuRI	GGCC	5 cut(s)	92, 1255, 1425, 2266, 2408
BtgI	CCRYGG	1 cut(s)	189
BtsCI	GGATG	3 cut(s)	622, 1363, 2107
BtsI	GCAGTG	1 cut(s)	1583
BtsIMutI	CAGTG	6 cut(s)	1102, 1263, 1315, 1583, 1680, 1778
BtuMI	TCGCGA	1 cut(s)	501
Cac8I	GCNNGC	8 cut(s)	136, 284, 721, 1203, 1394, 1474, 2478, 2482
CaiI	CAGNNNCTG	1 cut(s)	2275
CciI	TCATGA	1 cut(s)	792
CfoI	GCGC	4 cut(s)	140, 269, 276, 539
Cfr10I	RCCGGY	1 cut(s)	1515
Cfr13I	GGNCC	4 cut(s)	375, 514, 1423, 2432
CseI	GACGC	2 cut(s)	1699, 1838
Csp6I	GTAC	4 cut(s)	49, 409, 2392, 2662
CspAI	ACCGGT	1 cut(s)	1515
CspCI	CAANNNNNGTGG	2 cut(s)	1239, 1274
CviQI	GTAC	4 cut(s)	49, 409, 2392, 2662
DdeI	CTNAG	8 cut(s)	78, 769, 1733, 1761, 2194, 2268, 2346, 2511
DpnI	GATC	9 cut(s)	390, 680, 1374, 1701, 1800, 1876, 1968, 1981, 2496
DpnII	GATC	9 cut(s)	388, 678, 1372, 1699, 1798, 1874, 1966, 1979, 2494
DraI	TTTAAA	2 cut(s)	612, 2013
DrdI	GACNNNNNNGTC	1 cut(s)	326
DriI	GACNNNNNGTC	1 cut(s)	253
DseDI	GACNNNNNNGTC	1 cut(s)	326
EaeI	YGGCCR	1 cut(s)	90
Eam1104I	CTCTTC	4 cut(s)	170, 461, 597, 958
Eam1105I	GACNNNNNGTC	1 cut(s)	253
EarI	CTCTTC	4 cut(s)	170, 461, 597, 958
EciI	GGCGGA	2 cut(s)	1460, 1474
Eco130I	CCWWGG	3 cut(s)	189, 510, 2261
Eco147I	AGGCCT	2 cut(s)	2266, 2408
Eco24I	GRGCYC	2 cut(s)	744, 1243
Eco31I	GGTCTC	2 cut(s)	1367, 2245
Eco47I	GGWCC	3 cut(s)	375, 514, 2432
Eco57I	CTGAAG	6 cut(s)	501, 540, 907, 1728, 2435, 2457
Eco81I	CCTNAGG	1 cut(s)	2346
Eco88I	CYCGRG	1 cut(s)	743
EcoO109I	RGGNCCY	1 cut(s)	2432
EcoRI	GAATTC	1 cut(s)	1997
EcoRII	CCWGG	7 cut(s)	650, 826, 852, 1010, 1243, 1332, 1503
EcoT14I	CCWWGG	3 cut(s)	189, 510, 2261
EcoT22I	ATGCAT	1 cut(s)	1501
EcoT38I	GRGCYC	2 cut(s)	744, 1243
ErhI	CCWWGG	3 cut(s)	189, 510, 2261
Esp3I	CGTCTC	2 cut(s)	109, 1821
FalI	AAGNNNNNCTT	6 cut(s)	71, 103, 605, 637, 1185, 1217
FaqI	GGGAC	8 cut(s)	112, 241, 254, 388, 485, 500, 776, 1702
FauI	CCCGC	2 cut(s)	266, 287
FblI	GTMKAC	1 cut(s)	339
Fnu4HI	GCNGC	5 cut(s)	83, 535, 570, 1647, 2461
FokI	GGATG	3 cut(s)	629, 1370, 2114
FriOI	GRGCYC	2 cut(s)	744, 1243
Fsp4HI	GCNGC	5 cut(s)	83, 535, 570, 1647, 2461
FspBI	CTAG	6 cut(s)	158, 1145, 1410, 2429, 2457, 2570
GlaI	GCGC	4 cut(s)	139, 268, 275, 538
GluI	GCNGC	5 cut(s)	83, 535, 570, 1647, 2461
GsaI	CCCAGC	2 cut(s)	241, 274
GsuI	CTGGAG	3 cut(s)	236, 1227, 2297
HaeII	RGCGCY	1 cut(s)	277
HaeIII	GGCC	5 cut(s)	92, 1255, 1425, 2266, 2408
HapII	CCGG	5 cut(s)	61, 422, 438, 1156, 1516
HgaI	GACGC	2 cut(s)	1699, 1838
HhaI	GCGC	4 cut(s)	140, 269, 276, 539
Hin6I	GCGC	4 cut(s)	138, 267, 274, 537
HinP1I	GCGC	4 cut(s)	138, 267, 274, 537
HincII	GTYRAC	1 cut(s)	1135
HindII	GTYRAC	1 cut(s)	1135
HindIII	AAGCTT	1 cut(s)	1127
HpaII	CCGG	5 cut(s)	61, 422, 438, 1156, 1516
HphI	GGTGA	4 cut(s)	608, 1457, 2171, 2293
Hpy166II	GTNNAC	3 cut(s)	340, 1117, 1135
Hpy188III	TCNNGA	9 cut(s)	500, 712, 793, 1430, 1901, 1928, 2023, 2067, 2365
Hpy8I	GTNNAC	3 cut(s)	340, 1117, 1135
Hpy99I	CGWCG	8 cut(s)	224, 236, 302, 305, 308, 311, 314, 332
HpyCH4III	ACNGT	8 cut(s)	1097, 1627, 1669, 1675, 2075, 2108, 2119, 2247
HpyCH4IV	ACGT	2 cut(s)	312, 981
HpyF10VI	GCNNNNNNNGC	6 cut(s)	273, 1247, 1295, 1415, 1539, 2460
HpyF3I	CTNAG	8 cut(s)	78, 769, 1733, 1761, 2194, 2268, 2346, 2511
HpySE526I	ACGT	2 cut(s)	312, 981
HspAI	GCGC	4 cut(s)	138, 267, 274, 537
Kzo9I	GATC	9 cut(s)	388, 678, 1372, 1699, 1798, 1874, 1966, 1979, 2494
LguI	GCTCTTC	1 cut(s)	958
LmnI	GCTCC	6 cut(s)	27, 117, 291, 1246, 1267, 1303
Lsp1109I	GCAGC	4 cut(s)	94, 581, 1633, 2447
LweI	GCATC	2 cut(s)	871, 1405
MaeI	CTAG	6 cut(s)	158, 1145, 1410, 2429, 2457, 2570
MaeII	ACGT	2 cut(s)	312, 981
MaeIII	GTNAC	4 cut(s)	596, 1669, 2633, 2699
MalI	GATC	9 cut(s)	390, 680, 1374, 1701, 1800, 1876, 1968, 1981, 2496
MboI	GATC	9 cut(s)	388, 678, 1372, 1699, 1798, 1874, 1966, 1979, 2494
MfeI	CAATTG	1 cut(s)	1935
MflI	RGATCY	5 cut(s)	1372, 1699, 1798, 1979, 2494
MhlI	GDGCHC	3 cut(s)	744, 1119, 1243
MlsI	TGGCCA	1 cut(s)	92
MluNI	TGGCCA	1 cut(s)	92
MlyI	GAGTC	4 cut(s)	428, 467, 2081, 2461
MmeI	TCCRAC	4 cut(s)	80, 342, 872, 2151
Mox20I	TGGCCA	1 cut(s)	92
Mph1103I	ATGCAT	1 cut(s)	1501
MroXI	GAANNNNTTC	1 cut(s)	2537
MscI	TGGCCA	1 cut(s)	92
MslI	CAYNNNNRTG	3 cut(s)	867, 2682, 2724
Msp20I	TGGCCA	1 cut(s)	92
MspA1I	CMGCKG	1 cut(s)	2230
MspCI	CTTAAG	1 cut(s)	1714
MspI	CCGG	5 cut(s)	61, 422, 438, 1156, 1516
MspR9I	CCNGG	8 cut(s)	61, 652, 828, 854, 1012, 1245, 1334, 1505
MunI	CAATTG	1 cut(s)	1935
MvaI	CCWGG	7 cut(s)	652, 828, 854, 1012, 1245, 1334, 1505
MvnI	CGCG	4 cut(s)	138, 267, 501, 537
MwoI	GCNNNNNNNGC	6 cut(s)	273, 1247, 1295, 1415, 1539, 2460
NciI	CCSGG	1 cut(s)	61
NcoI	CCATGG	1 cut(s)	189
NdeII	GATC	9 cut(s)	388, 678, 1372, 1699, 1798, 1874, 1966, 1979, 2494
NlaIV	GGNNCC	6 cut(s)	376, 516, 533, 1242, 1263, 1800
NmeAIII	GCCGAG	1 cut(s)	2452
NmuCI	GTSAC	2 cut(s)	596, 2699
NruI	TCGCGA	1 cut(s)	501
NsiI	ATGCAT	1 cut(s)	1501
NspI	RCATGY	2 cut(s)	2446, 2659
OliI	CACNNNNGTG	1 cut(s)	2682
PagI	TCATGA	1 cut(s)	792
PceI	AGGCCT	2 cut(s)	2266, 2408
PciI	ACATGT	2 cut(s)	2442, 2655
PciSI	GCTCTTC	1 cut(s)	958
PcsI	WCGNNNNNNNCGW	9 cut(s)	192, 216, 228, 297, 303, 306, 309, 315, 1783
PdmI	GAANNNNTTC	1 cut(s)	2537
PflMI	CCANNNNNTGG	2 cut(s)	1111, 1685
PfoI	TCCNGGA	2 cut(s)	826, 852
PinAI	ACCGGT	1 cut(s)	1515
PkrI	GCNGC	5 cut(s)	84, 536, 571, 1648, 2462
Ple19I	CGATCG	1 cut(s)	1877
PleI	GAGTC	4 cut(s)	428, 467, 2081, 2461
PpsI	GAGTC	4 cut(s)	428, 467, 2081, 2461
PpuMI	RGGWCCY	1 cut(s)	2432
PscI	ACATGT	2 cut(s)	2442, 2655
PshAI	GACNNNNGTC	1 cut(s)	2109
Psp5II	RGGWCCY	1 cut(s)	2432
Psp6I	CCWGG	7 cut(s)	650, 826, 852, 1010, 1243, 1332, 1503
PspFI	CCCAGC	2 cut(s)	237, 270
PspGI	CCWGG	7 cut(s)	650, 826, 852, 1010, 1243, 1332, 1503
PspN4I	GGNNCC	6 cut(s)	376, 516, 533, 1242, 1263, 1800
PspPI	GGNCC	4 cut(s)	375, 514, 1423, 2432
PspPPI	RGGWCCY	1 cut(s)	2432
PsrI	GAACNNNNNNTAC	2 cut(s)	962, 994
PstNI	CAGNNNCTG	1 cut(s)	2275
PsuI	RGATCY	5 cut(s)	1372, 1699, 1798, 1979, 2494
PvuI	CGATCG	1 cut(s)	1877
PvuII	CAGCTG	1 cut(s)	2230
RgaI	GCGATCGC	1 cut(s)	1877
RruI	TCGCGA	1 cut(s)	501
RsaI	GTAC	4 cut(s)	50, 410, 2393, 2663
RsaNI	GTAC	4 cut(s)	49, 409, 2392, 2662
RseI	CAYNNNNRTG	3 cut(s)	867, 2682, 2724
SapI	GCTCTTC	1 cut(s)	958
SatI	GCNGC	5 cut(s)	83, 535, 570, 1647, 2461
Sau3AI	GATC	9 cut(s)	388, 678, 1372, 1699, 1798, 1874, 1966, 1979, 2494
Sau96I	GGNCC	4 cut(s)	375, 514, 1423, 2432
SchI	GAGTC	4 cut(s)	428, 467, 2081, 2461
ScrFI	CCNGG	8 cut(s)	61, 652, 828, 854, 1012, 1245, 1334, 1505
SduI	GDGCHC	3 cut(s)	744, 1119, 1243
SfaAI	GCGATCGC	1 cut(s)	1877
SfaNI	GCATC	2 cut(s)	871, 1405
SfcI	CTRYAG	2 cut(s)	352, 2115
SgfI	GCGATCGC	1 cut(s)	1877
SinI	GGWCC	3 cut(s)	375, 514, 2432
SmiI	ATTTAAAT	1 cut(s)	2013
SmiMI	CAYNNNNRTG	3 cut(s)	867, 2682, 2724
SmlI	CTYRAG	3 cut(s)	1000, 1714, 2402
SmoI	CTYRAG	3 cut(s)	1000, 1714, 2402
SseBI	AGGCCT	2 cut(s)	2266, 2408
SsiI	CCGC	9 cut(s)	259, 265, 280, 535, 698, 1445, 1459, 1609, 2629
SspI	AATATT	1 cut(s)	1454
SspMI	CTAG	6 cut(s)	158, 1145, 1410, 2429, 2457, 2570
StuI	AGGCCT	2 cut(s)	2266, 2408
StyD4I	CCNGG	8 cut(s)	59, 650, 826, 852, 1010, 1243, 1332, 1503
StyI	CCWWGG	3 cut(s)	189, 510, 2261
SwaI	ATTTAAAT	1 cut(s)	2013
TaaI	ACNGT	8 cut(s)	1097, 1627, 1669, 1675, 2075, 2108, 2119, 2247
TaiI	ACGT	2 cut(s)	315, 984
TaqI	TCGA	3 cut(s)	246, 330, 2650
TaqII	GACCGA	1 cut(s)	392
TatI	WGTACW	3 cut(s)	48, 408, 2391
TauI	GCSGC	1 cut(s)	537
TscAI	CASTG	6 cut(s)	1102, 1263, 1315, 1590, 1680, 1778
TseFI	GTSAC	2 cut(s)	596, 2699
TseI	GCWGC	4 cut(s)	82, 569, 1646, 2460
Tsp45I	GTSAC	2 cut(s)	596, 2699
TspGWI	ACGGA	2 cut(s)	14, 91
TspRI	CASTG	6 cut(s)	1102, 1263, 1315, 1590, 1680, 1778
Van91I	CCANNNNNTGG	2 cut(s)	1111, 1685
Vha464I	CTTAAG	1 cut(s)	1714
VneI	GTGCAC	1 cut(s)	1115
VpaK11BI	GGWCC	3 cut(s)	375, 514, 2432
XapI	RAATTY	3 cut(s)	661, 1997, 2186
XceI	RCATGY	2 cut(s)	2446, 2659
XcmI	CCANNNNNNNNNTGG	2 cut(s)	756, 2599
XmiI	GTMKAC	1 cut(s)	339
XmnI	GAANNNNTTC	1 cut(s)	2537
XspI	CTAG	6 cut(s)	158, 1145, 1410, 2429, 2457, 2570
Zsp2I	ATGCAT	1 cut(s)	1501

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.