Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0006941

Physical Location & Seq

Genomic Coordinates Reverse (-)

36294695 .. 36298008

Gene Structure 3314 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG310400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 804 bp

ATGGATAATGTGAGCTTCTCTGGTGACGAAGAGCTTTTAAAGGATGTCTTTTCTTTACAAGTTAGGCTCTTTGTTTCCTGGGAAACAAATTCATTGGTTGTAAAGATCAGCCAAAAGGATAATGTGGTTGATTCTTTCAAGAGAGCCTGCATTATTTTCAGTTCAGAGCCCGAGCCATTGCATATTTGGGACTTCTCAGGGCAGACAACCCAATTTTTCATGAATGACAGAAGTAGTTTGCCAAATGACATTCCTGGACAACTGAACAAAGAGATTGTCCTGGAATTGCATCTTCTTGGATTTTCAGAGGTCAGAGGTTGGAGAAGTGATGACATGGCTGAAAACCACTTCAGTATTGATGGTTGTATTAGTGGTGGCTCTTCTAAAATGAATGGGAACATTTACTACGTTAATCCCTACTTAAACTCAAGCAACTCCTGGCGAAGTGCTGTTATGTATAGAGGAGTTGGTTCTTTAGGCTTAACTGGTATAAAGAATCTTGGGAATACTTGTTTTATGAACAGTGCAATCCAATGTTTGGTGCACACTCCAAAGCTTGTTGACTATTTTCTAGGAGATTACCGGAAGGACATGAACTATCAGAACCCATTGGGAATGAAAGGAGAGCTTGCTTTTGCATTTGGAGAATTATTGAGGAGATTATGGGCTCCAGGTGCAAGGCCAGTGGCTCCAAGAATGTTCAAGCAAAAACTTGCCAGTTTTGCTCCTCAATTCAGTGGCTATAATCAACTGATTCCCAGGAACTCCTTGCTTTTTTGCTGGATGGTCTCCATGAAGATCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04137 map04137

Pfam Domains

Protein Families

UCH

Protein Analysis

267

Amino Acids

30.23

Weight (kDa)

7.63

Isoelectric Point (pI)

34.04

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ubiquitin_UBP8	PF25242	21 - 75	9.9e-31	UBP8-like, ubiquitin-like domain
UCH	PF00443	162 - 250	3.1e-18	Ubiquitin carboxyl-terminal hydrolase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006941)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g20680 FvH4_6g20680 FvH4_6g20680
malus_domestica	MD00G1072700.v1.1 MD12G1043100.v1.1 MD14G1042200.v1.1
prunus_persica	Prupe.7G091700_v2.0.a1 Prupe.7G091700_v2.0.a1 Prupe.7G091700_v2.0.a1 Prupe.7G091700_v2.0.a1
pyrus_communis	pycom12g03720 pycom14g03580
rosa_chinensis	RchiOBHm_Chr3g0476581
rosa_laevigata	RLG00000001984 RLG00000023761
rosa_multiflora	Rmu_sc0008241.1_g000007 Rmu_sc0020945.1_g000001
rosa_roxburghii	Rroxscaffold_6G00405190
rosa_rugosa	Rorug03G0155400
rosa_samantha	Rh3AG206000 Rh3BG238600 Rh3CG232300 Rh3DG232200 Rh7DG310400
rosa_wichuraiana	Rw3G018760 Rw7G026340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	538
AcsI	RAATTY	1 cut(s)	88
AcuI	CTGAAG	1 cut(s)	334
AfiI	CCNNNNNNNGG	1 cut(s)	538
AgsI	TTSAA	2 cut(s)	139, 703
AjnI	CCWGG	6 cut(s)	77, 253, 279, 437, 670, 758
AluBI	AGCT	4 cut(s)	15, 34, 556, 628
AluI	AGCT	4 cut(s)	15, 34, 556, 628
Alw21I	GWGCWC	1 cut(s)	546
Alw26I	GTCTC	1 cut(s)	793
Alw44I	GTGCAC	1 cut(s)	542
Ama87I	CYCGRG	1 cut(s)	170
AoxI	GGCC	1 cut(s)	680
ApaLI	GTGCAC	1 cut(s)	542
ApoI	RAATTY	1 cut(s)	88
ArsI	GACNNNNNNTTYG	2 cut(s)	261, 293
AsuHPI	GGTGA	1 cut(s)	35
AvaI	CYCGRG	1 cut(s)	170
BaeGI	GKGCMC	1 cut(s)	546
BanII	GRGCYC	2 cut(s)	171, 670
Bbv12I	GWGCWC	1 cut(s)	546
BccI	CCATC	2 cut(s)	353, 778
BciT130I	CCWGG	6 cut(s)	79, 255, 281, 439, 672, 760
BcoDI	GTCTC	1 cut(s)	793
BfaI	CTAG	1 cut(s)	572
BglII	AGATCT	1 cut(s)	798
Bme1390I	CCNGG	6 cut(s)	79, 255, 281, 439, 672, 760
BmeT110I	CYCGRG	1 cut(s)	170
BmiI	GGNNCC	2 cut(s)	669, 690
BmrFI	CCNGG	6 cut(s)	79, 255, 281, 439, 672, 760
BmsI	GCATC	1 cut(s)	298
BpmI	CTGGAG	1 cut(s)	654
BpuEI	CTTGAG	1 cut(s)	412
BsaI	GGTCTC	1 cut(s)	793
BsaJI	CCNNGG	2 cut(s)	78, 758
BsaWI	WCCGGW	1 cut(s)	582
Bsc4I	CCNNNNNNNGG	1 cut(s)	538
Bse1I	ACTGG	3 cut(s)	490, 683, 717
Bse3DI	GCAATG	1 cut(s)	176
BseBI	CCWGG	6 cut(s)	79, 255, 281, 439, 672, 760
BseDI	CCNNGG	2 cut(s)	78, 758
BseGI	GGATG	2 cut(s)	49, 789
BseLI	CCNNNNNNNGG	1 cut(s)	538
BseMI	GCAATG	1 cut(s)	176
BseMII	CTCAG	1 cut(s)	210
BseNI	ACTGG	3 cut(s)	490, 683, 717
BseRI	GAGGAG	3 cut(s)	477, 670, 717
BseSI	GKGCMC	1 cut(s)	546
BshFI	GGCC	1 cut(s)	682
BsiHKAI	GWGCWC	1 cut(s)	546
BsiHKCI	CYCGRG	1 cut(s)	170
BsiSI	CCGG	1 cut(s)	583
BslFI	GGGAC	1 cut(s)	203
BslI	CCNNNNNNNGG	1 cut(s)	538
BsmAI	GTCTC	1 cut(s)	793
BsmFI	GGGAC	1 cut(s)	203
BsnI	GGCC	1 cut(s)	682
Bso31I	GGTCTC	1 cut(s)	793
BsoBI	CYCGRG	1 cut(s)	170
Bsp1286I	GDGCHC	3 cut(s)	171, 546, 670
Bsp143I	GATC	2 cut(s)	105, 798
BspANI	GGCC	1 cut(s)	682
BspCNI	CTCAG	1 cut(s)	209
BspHI	TCATGA	1 cut(s)	219
BspLI	GGNNCC	2 cut(s)	669, 690
BspQI	GCTCTTC	2 cut(s)	24, 385
BspTNI	GGTCTC	1 cut(s)	793
BsrDI	GCAATG	1 cut(s)	176
BsrI	ACTGG	3 cut(s)	490, 683, 717
BssECI	CCNNGG	2 cut(s)	78, 758
BssMI	GATC	2 cut(s)	105, 798
Bst2UI	CCWGG	6 cut(s)	79, 255, 281, 439, 672, 760
Bst4CI	ACNGT	1 cut(s)	524
Bst6I	CTCTTC	2 cut(s)	24, 385
BstC8I	GCNNGC	2 cut(s)	148, 630
BstDEI	CTNAG	1 cut(s)	196
BstF5I	GGATG	2 cut(s)	49, 789
BstKTI	GATC	2 cut(s)	108, 801
BstMAI	GTCTC	1 cut(s)	793
BstMBI	GATC	2 cut(s)	105, 798
BstMWI	GCNNNNNNNGC	2 cut(s)	674, 722
BstNI	CCWGG	6 cut(s)	79, 255, 281, 439, 672, 760
BstSCI	CCNGG	6 cut(s)	77, 253, 279, 437, 670, 758
BstSLI	GKGCMC	1 cut(s)	546
BstX2I	RGATCY	1 cut(s)	798
BstYI	RGATCY	1 cut(s)	798
BsuRI	GGCC	1 cut(s)	682
BtsCI	GGATG	2 cut(s)	49, 789
BtsIMutI	CAGTG	3 cut(s)	529, 690, 742
Cac8I	GCNNGC	2 cut(s)	148, 630
CciI	TCATGA	1 cut(s)	219
CspCI	CAANNNNNGTGG	2 cut(s)	666, 701
CviAII	CATG	4 cut(s)	220, 334, 592, 793
DdeI	CTNAG	1 cut(s)	196
DpnI	GATC	2 cut(s)	107, 800
DpnII	GATC	2 cut(s)	105, 798
DraI	TTTAAA	1 cut(s)	39
Eam1104I	CTCTTC	2 cut(s)	24, 385
EarI	CTCTTC	2 cut(s)	24, 385
Eco24I	GRGCYC	2 cut(s)	171, 670
Eco31I	GGTCTC	1 cut(s)	793
Eco57I	CTGAAG	1 cut(s)	334
Eco88I	CYCGRG	1 cut(s)	170
EcoRII	CCWGG	6 cut(s)	77, 253, 279, 437, 670, 758
EcoT38I	GRGCYC	2 cut(s)	171, 670
FaeI	CATG	4 cut(s)	223, 337, 595, 796
FalI	AAGNNNNNCTT	4 cut(s)	32, 64, 612, 644
FaqI	GGGAC	1 cut(s)	203
FatI	CATG	4 cut(s)	219, 333, 591, 792
FokI	GGATG	2 cut(s)	56, 796
FriOI	GRGCYC	2 cut(s)	171, 670
FspBI	CTAG	1 cut(s)	572
GsuI	CTGGAG	1 cut(s)	654
HaeIII	GGCC	1 cut(s)	682
HapII	CCGG	1 cut(s)	583
Hin1II	CATG	4 cut(s)	223, 337, 595, 796
HincII	GTYRAC	1 cut(s)	562
HindII	GTYRAC	1 cut(s)	562
HindIII	AAGCTT	1 cut(s)	554
HinfI	GANTC	3 cut(s)	131, 496, 754
HpaII	CCGG	1 cut(s)	583
HphI	GGTGA	1 cut(s)	35
Hpy166II	GTNNAC	2 cut(s)	544, 562
Hpy188I	TCNGA	4 cut(s)	166, 307, 314, 603
Hpy188III	TCNNGA	2 cut(s)	139, 220
Hpy8I	GTNNAC	2 cut(s)	544, 562
HpyAV	CCTTC	1 cut(s)	580
HpyCH4III	ACNGT	1 cut(s)	524
HpyCH4IV	ACGT	1 cut(s)	408
HpyCH4V	TGCA	7 cut(s)	150, 181, 289, 527, 544, 638, 677
HpyF10VI	GCNNNNNNNGC	2 cut(s)	674, 722
HpyF3I	CTNAG	1 cut(s)	196
HpySE526I	ACGT	1 cut(s)	408
Hsp92II	CATG	4 cut(s)	223, 337, 595, 796
Kzo9I	GATC	2 cut(s)	105, 798
LguI	GCTCTTC	2 cut(s)	24, 385
LmnI	GCTCC	3 cut(s)	673, 694, 730
LweI	GCATC	1 cut(s)	298
MaeI	CTAG	1 cut(s)	572
MaeII	ACGT	1 cut(s)	408
MaeIII	GTNAC	1 cut(s)	23
MalI	GATC	2 cut(s)	107, 800
MboI	GATC	2 cut(s)	105, 798
MboII	GAAGA	3 cut(s)	41, 284, 372
MflI	RGATCY	1 cut(s)	798
MhlI	GDGCHC	3 cut(s)	171, 546, 670
MluCI	AATT	5 cut(s)	88, 212, 284, 647, 731
MmeI	TCCRAC	1 cut(s)	299
MnlI	CCTC	5 cut(s)	301, 308, 455, 648, 738
MseI	TTAA	4 cut(s)	38, 411, 422, 482
MspI	CCGG	1 cut(s)	583
MspR9I	CCNGG	6 cut(s)	79, 255, 281, 439, 672, 760
MvaI	CCWGG	6 cut(s)	79, 255, 281, 439, 672, 760
MwoI	GCNNNNNNNGC	2 cut(s)	674, 722
NdeII	GATC	2 cut(s)	105, 798
NlaIII	CATG	4 cut(s)	223, 337, 595, 796
NlaIV	GGNNCC	2 cut(s)	669, 690
NmuCI	GTSAC	1 cut(s)	23
PagI	TCATGA	1 cut(s)	219
PciSI	GCTCTTC	2 cut(s)	24, 385
PfeI	GAWTC	3 cut(s)	131, 496, 754
PflMI	CCANNNNNTGG	1 cut(s)	538
PfoI	TCCNGGA	2 cut(s)	253, 279
Psp6I	CCWGG	6 cut(s)	77, 253, 279, 437, 670, 758
PspGI	CCWGG	6 cut(s)	77, 253, 279, 437, 670, 758
PspN4I	GGNNCC	2 cut(s)	669, 690
PsrI	GAACNNNNNNTAC	2 cut(s)	389, 421
PsuI	RGATCY	1 cut(s)	798
SapI	GCTCTTC	2 cut(s)	24, 385
SaqAI	TTAA	4 cut(s)	38, 411, 422, 482
Sau3AI	GATC	2 cut(s)	105, 798
ScrFI	CCNGG	6 cut(s)	79, 255, 281, 439, 672, 760
SduI	GDGCHC	3 cut(s)	171, 546, 670
SetI	ASST	8 cut(s)	17, 36, 312, 319, 411, 558, 630, 676
SfaNI	GCATC	1 cut(s)	298
SmlI	CTYRAG	1 cut(s)	427
SmoI	CTYRAG	1 cut(s)	427
Sse9I	AATT	5 cut(s)	88, 212, 284, 647, 731
SspMI	CTAG	1 cut(s)	572
StyD4I	CCNGG	6 cut(s)	77, 253, 279, 437, 670, 758
TaaI	ACNGT	1 cut(s)	524
TaiI	ACGT	1 cut(s)	411
TasI	AATT	5 cut(s)	88, 212, 284, 647, 731
TfiI	GAWTC	3 cut(s)	131, 496, 754
Tru1I	TTAA	4 cut(s)	38, 411, 422, 482
Tru9I	TTAA	4 cut(s)	38, 411, 422, 482
TscAI	CASTG	3 cut(s)	529, 690, 742
TseFI	GTSAC	1 cut(s)	23
Tsp45I	GTSAC	1 cut(s)	23
TspDTI	ATGAA	7 cut(s)	81, 208, 236, 404, 533, 608, 632
TspRI	CASTG	3 cut(s)	529, 690, 742
Van91I	CCANNNNNTGG	1 cut(s)	538
VneI	GTGCAC	1 cut(s)	542
XapI	RAATTY	1 cut(s)	88
XcmI	CCANNNNNNNNNTGG	1 cut(s)	183
XspI	CTAG	1 cut(s)	572

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.