Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3A

Orthogroup ID

OG0006941

Physical Location & Seq

Genomic Coordinates Forward (+)

20526094 .. 20535100

Gene Structure 9007 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3AG206000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2742 bp

ATGACCCGACTCTCGGAAAAGCTCCGTCTGTGTCTCTTCCTTCTTCTGTACAATCCAACCCGGTTTCTCTCTCCTCCTAAGCAGCTCTTGGCCACTCTCTCCGTCTCCACGCTCCACCTCTGCAAGTCCCTCGCACGCGCCCTCGCCTCCAAAACCCTAGCCCTCTTCTTCTTCTTCTTCTTCTTCTTCTTCGCCATGGACGACCCCTTCCCCTTCGCCTCTGCCGACGGCGACAACGACGGCTGGGACTTCGACCTCCAGTCCCGCAACCGCGCCCAGCGCCCCCGCCTCCTCCACGACTACGACGACGACGACGACGTTTCCGACAATGCCGTCGATAAGGTCTACCTCGTTCCCTACAGGTGGTGGAAGGAGGTTCGGACAGAGGACGATGATCGTGGCGAAGGGGTATTGTACAGCACTTCGCCGGAGGAAGACGACTCCGGCTCGGAAATTGTGTTGAGTTTGAGGAAGAGGGACTCTGCTGAAGAAGGGTTTTCAGGTCGCGAGTATGCCTTGGTCCCTGAAGCGACATGGTGCCGTGCACTCATACGGCATTATGATTTTAATACAGCAGCAATGGATAATGTGAGCTTCTTTGGTGACGAAGAGTTTTTAAAGGATGTCTTTTCTTTACAAATTAGGCTCTTTGTTTCCTGGGAAACAAATTCATTGGTTGTAAAGATCAGCCAAAAGGATAATGCGGTTGATTCTTTCAAGAGAGCCTGCATTATTTTCAGTTCAGAGCCCGAGCCATTGCATATTTGGGACTTCTCAGGGCAGACAACCCAATTTTTCATGAATGACAGAATTAGTTTGCCAAATGACATTCCTGGACAATTGAACATAGAGATTGTCCTGGAATTGCATCTTCATGGATTTTCAGAGGTCAGAGGTTGGAGGAGTGATGACATGGCTGAAAACCACTTCAGTATTGATGGTTGTATTAGTGGTGGCTCTTCTAAAATGAATGGGAACATTTACTACGTCAATCCCTACTTAAACTCAAGCAACTCCTGGCGAAGTGCTGTTATGTATAGAGGAGTTGGTTCTTTAGGCTTAACTGGTATAAAGAATCTTGGGAATACTTGTTTTATGAACAGTGCAATCCAATGTTTGGTGCACACTCCAAAGCTTGTTGACTATTTTCTAGGAGATTACCGGAAGGACATGAACTATCAGAACCCATTGGGAATGAAAGGAGAGCTTGCTTTTGCATTTGGAGAATTATTGAGGAGATTATGGGCTCCAGGTGCAAGGCCAGTGGCTCCAAGAATGTTCAAGCAAAAACTTGCCAGTTTTGCTCCTCAATTCAGTGGCTATAATCAACATGATTCCCAGGAACTCCTTGCTTTTTTGCTGGATGGTCTCCATGAAGATCTAAATCGTGTGAAATGCAAGCCATATTTTGAAGCTAAAGATGCAGAGGGCCGTCCAGATGAAGAAGTGGCGGAAGAATATTGGCGGAATCACCTTGCTCGCAATGATTCCATTATTGTTAATGCATACCAGGGTCAATACCGGTCAAAATTGGTTTGCCCCGATTGCAACAAGGTGTCCATTACATTTGACCCATTTATGTATCTATCACTGCCATTACCTTCTACAACAATGCGGAGTATGACTTTGACGGTTTTAAGCACAGATGGTGCTGCGTTGCCTACTACATTTACTGTAACAGTGCCAAAGAGTGGGAAGCTCGTGGATCTTACTAAAGCCTTAAGTATTGCCTGTTCTCTAAGAGATGATGAAACCCTGTTGGTGGCTGAGATATACCAGTGTCGCATATTTCGTCTATTGGAGGATCCATCTGATTCATTAGCCTTTGTTAGAGACGCTGACAAACTGGTTGCTTATCGCTTACCAAAAGATTTTGAGCGATCGCACTTGGTTGTTTTTCTTCATCAGGAGAAGGGAAAGTATTACTATAATCAAGACACAATCGGTATCCCACTTTTAGCAAGGGTTTCTGATCCTTGTTATGGATCTGATATTCGCAACGAATTCCTAAATAATTTAAATCCATTCTTGAAGCCTGATGGAGATATATCAGATGTTTTTGATGATGATTCTGGAAACTGTGCTAATGAAGACTCTAACAAGGAGGATGTCAGTAGTCCTACAGTTTGGGATAATGATTCTGACACAGACAGGGGAACAATGGGTGAAGTGCTGTTGGATACTGACTTCAAATTTTACTTAGCGGATACAAGAAAGGAAATAGAGTTGAATCAGCTGATAGAGGTCTCACGGTTGCCTGTGATACCAAGGCCTAAGATACTGGAGGTGATTGTTTTATGGACAGATGAGATGATTAACAAGTATGATACACGCCTTCTAAACTCTTTGCCTGAGGTCTTCAACATTTTCACGAGTAGTGAAGAATCTGTTTCCCTGTACAAATGCCTTGAGGCCTTTCTGAAGGAAGAACCTCTAGGACCTGAAGACATGTGGTTCTGCCCTAGCTGCAAGACTCCTCGGCAAGCCAGCAAAAAGTTAGATCTTTGGAGATTGCCTGAGATATTGGTTATTCATCTGAAAAGATTCTCGTATGACCATTATTTTAAGAACAAGCTAGAAACATTAGTTGATTTTCCCATTTATGATATGGACATCTCAACATACATTACCCACCGCAGTAACCAGTTATCCAGTCAATACATGTTGTACGCAATCAGTAATCACTATGGTGGCTTGGGTGGTGGTCACTATACGGCATTTGTTCATGTAAGTGTTGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04137 map04137

Pfam Domains

Protein Families

UCH

Protein Analysis

913

Amino Acids

104.44

Weight (kDa)

5.0

Isoelectric Point (pI)

42.87

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ubiquitin_UBP8	PF25242	214 - 268	1.4e-30	UBP8-like, ubiquitin-like domain
UCH	PF00443	355 - 909	1.9e-62	Ubiquitin carboxyl-terminal hydrolase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006941)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g20680 FvH4_6g20680 FvH4_6g20680
malus_domestica	MD00G1072700.v1.1 MD12G1043100.v1.1 MD14G1042200.v1.1
prunus_persica	Prupe.7G091700_v2.0.a1 Prupe.7G091700_v2.0.a1 Prupe.7G091700_v2.0.a1 Prupe.7G091700_v2.0.a1
pyrus_communis	pycom12g03720 pycom14g03580
rosa_chinensis	RchiOBHm_Chr3g0476581
rosa_laevigata	RLG00000001984 RLG00000023761
rosa_multiflora	Rmu_sc0008241.1_g000007 Rmu_sc0020945.1_g000001
rosa_roxburghii	Rroxscaffold_6G00405190
rosa_rugosa	Rorug03G0155400
rosa_samantha	Rh3AG206000 Rh3BG238600 Rh3CG232300 Rh3DG232200 Rh7DG310400
rosa_wichuraiana	Rw3G018760 Rw7G026340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	332
AccB1I	GGYRCC	1 cut(s)	537
AccB7I	CCANNNNNTGG	2 cut(s)	1117, 1691
AccI	GTMKAC	1 cut(s)	345
AccII	CGCG	3 cut(s)	138, 273, 507
AciI	CCGC	9 cut(s)	265, 271, 286, 704, 1451, 1465, 1615, 2204, 2635
AclWI	GGATC	5 cut(s)	1713, 1799, 1812, 1967, 1993
AcoI	YGGCCR	1 cut(s)	90
AcsI	RAATTY	3 cut(s)	667, 2003, 2192
AcuI	CTGAAG	5 cut(s)	507, 546, 913, 2441, 2463
AfaI	GTAC	4 cut(s)	50, 416, 2399, 2669
AfiI	CCNNNNNNNGG	6 cut(s)	13, 363, 1117, 1691, 1762, 1982
AflII	CTTAAG	1 cut(s)	1720
AflIII	ACRYGT	2 cut(s)	2448, 2661
AgeI	ACCGGT	1 cut(s)	1521
AgsI	TTSAA	8 cut(s)	718, 844, 1282, 1412, 2032, 2191, 2230, 2362
AhdI	GACNNNNNGTC	1 cut(s)	259
AjnI	CCWGG	7 cut(s)	656, 832, 858, 1016, 1249, 1338, 1509
AleI	CACNNNNGTG	1 cut(s)	2688
Alw21I	GWGCWC	2 cut(s)	547, 1125
Alw26I	GTCTC	5 cut(s)	38, 109, 1373, 1827, 2251
Alw44I	GTGCAC	2 cut(s)	543, 1121
AlwI	GGATC	5 cut(s)	1713, 1799, 1812, 1967, 1993
Ama87I	CYCGRG	1 cut(s)	749
AoxI	GGCC	5 cut(s)	90, 1259, 1429, 2270, 2412
ApaLI	GTGCAC	2 cut(s)	543, 1121
ApeKI	GCWGC	4 cut(s)	82, 575, 1652, 2466
ApoI	RAATTY	3 cut(s)	667, 2003, 2192
AsiGI	ACCGGT	1 cut(s)	1521
AsiSI	GCGATCGC	1 cut(s)	1883
Asp700I	GAANNNNTTC	1 cut(s)	2543
AspLEI	GCGC	3 cut(s)	140, 275, 282
AspS9I	GGNCC	3 cut(s)	520, 1429, 2438
AsuC2I	CCSGG	1 cut(s)	61
AsuHPI	GGTGA	4 cut(s)	614, 1463, 2177, 2299
AvaI	CYCGRG	1 cut(s)	749
AvaII	GGWCC	2 cut(s)	520, 2438
AxyI	CCTNAGG	1 cut(s)	2352
BaeGI	GKGCMC	2 cut(s)	547, 1125
BalI	TGGCCA	1 cut(s)	92
BamHI	GGATCC	1 cut(s)	1804
BanI	GGYRCC	1 cut(s)	537
BanII	GRGCYC	2 cut(s)	750, 1249
BauI	CACGAG	2 cut(s)	1700, 2371
BbsI	GAAGAC	4 cut(s)	441, 2097, 2350, 2451
Bbv12I	GWGCWC	2 cut(s)	547, 1125
BbvI	GCAGC	4 cut(s)	94, 587, 1639, 2453
BccI	CCATC	5 cut(s)	932, 1358, 1640, 1816, 2033
BceAI	ACGGC	7 cut(s)	244, 256, 317, 525, 569, 1416, 2730
BcgI	CGANNNNNNTGC	2 cut(s)	112, 146
BciT130I	CCWGG	7 cut(s)	658, 834, 860, 1018, 1251, 1340, 1511
BciVI	GTATCC	3 cut(s)	1958, 2173, 2200
BcnI	CCSGG	1 cut(s)	61
BcoDI	GTCTC	5 cut(s)	38, 109, 1373, 1827, 2251
BfaI	CTAG	5 cut(s)	158, 1151, 2435, 2463, 2576
BfmI	CTRYAG	2 cut(s)	358, 2121
BfoI	RGCGCY	1 cut(s)	283
BfrI	CTTAAG	1 cut(s)	1720
BfuI	GTATCC	3 cut(s)	1958, 2173, 2200
BglII	AGATCT	2 cut(s)	1378, 2500
BisI	GCNGC	4 cut(s)	83, 576, 1653, 2467
BlsI	GCNGC	4 cut(s)	84, 577, 1654, 2468
Bme1390I	CCNGG	8 cut(s)	61, 658, 834, 860, 1018, 1251, 1340, 1511
Bme18I	GGWCC	2 cut(s)	520, 2438
BmeRI	GACNNNNNGTC	1 cut(s)	259
BmeT110I	CYCGRG	1 cut(s)	749
BmgT120I	GGNCC	3 cut(s)	520, 1429, 2438
BmiI	GGNNCC	5 cut(s)	522, 539, 1248, 1269, 1806
BmrFI	CCNGG	8 cut(s)	61, 658, 834, 860, 1018, 1251, 1340, 1511
BmsI	GCATC	2 cut(s)	877, 1411
BpiI	GAAGAC	4 cut(s)	441, 2097, 2350, 2451
BpmI	CTGGAG	3 cut(s)	242, 1233, 2303
Bpu10I	CCTNAGC	1 cut(s)	78
BpuEI	CTTGAG	2 cut(s)	991, 2429
BpuMI	CCSGG	1 cut(s)	61
BsaBI	GATNNNNATC	1 cut(s)	1383
BsaI	GGTCTC	2 cut(s)	1373, 2251
BsaJI	CCNNGG	7 cut(s)	195, 516, 657, 1338, 1510, 2267, 2477
BsaWI	WCCGGW	2 cut(s)	1161, 1521
Bsc4I	CCNNNNNNNGG	6 cut(s)	13, 363, 1117, 1691, 1762, 1982
Bse118I	RCCGGY	1 cut(s)	1521
Bse1I	ACTGG	9 cut(s)	259, 1069, 1262, 1296, 1777, 1851, 2286, 2644, 2652
Bse21I	CCTNAGG	1 cut(s)	2352
Bse3DI	GCAATG	3 cut(s)	585, 755, 1489
Bse8I	GATNNNNATC	1 cut(s)	1383
BseBI	CCWGG	7 cut(s)	658, 834, 860, 1018, 1251, 1340, 1511
BseDI	CCNNGG	7 cut(s)	195, 516, 657, 1338, 1510, 2267, 2477
BseGI	GGATG	3 cut(s)	628, 1369, 2113
BseJI	GATNNNNATC	1 cut(s)	1383
BseLI	CCNNNNNNNGG	6 cut(s)	13, 363, 1117, 1691, 1762, 1982
BseMI	GCAATG	3 cut(s)	585, 755, 1489
BseMII	CTCAG	4 cut(s)	789, 1758, 2343, 2508
BseNI	ACTGG	9 cut(s)	259, 1069, 1262, 1296, 1777, 1851, 2286, 2644, 2652
BseRI	GAGGAG	7 cut(s)	63, 281, 916, 1056, 1249, 1296, 2466
BseSI	GKGCMC	2 cut(s)	547, 1125
BseXI	GCAGC	4 cut(s)	94, 587, 1639, 2453
BseYI	CCCAGC	2 cut(s)	243, 276
Bsh1236I	CGCG	3 cut(s)	138, 273, 507
Bsh1285I	CGRYCG	1 cut(s)	1883
BshFI	GGCC	5 cut(s)	92, 1261, 1431, 2272, 2414
BshNI	GGYRCC	1 cut(s)	537
BshTI	ACCGGT	1 cut(s)	1521
BsiEI	CGRYCG	1 cut(s)	1883
BsiHKAI	GWGCWC	2 cut(s)	547, 1125
BsiHKCI	CYCGRG	1 cut(s)	749
BsiSI	CCGG	5 cut(s)	61, 428, 444, 1162, 1522
BslFI	GGGAC	6 cut(s)	112, 247, 260, 491, 506, 782
BslI	CCNNNNNNNGG	6 cut(s)	13, 363, 1117, 1691, 1762, 1982
BsmAI	GTCTC	5 cut(s)	38, 109, 1373, 1827, 2251
BsmBI	CGTCTC	2 cut(s)	109, 1827
BsmFI	GGGAC	6 cut(s)	112, 247, 260, 491, 506, 782
BsnI	GGCC	5 cut(s)	92, 1261, 1431, 2272, 2414
Bso31I	GGTCTC	2 cut(s)	1373, 2251
BsoBI	CYCGRG	1 cut(s)	749
Bsp1286I	GDGCHC	4 cut(s)	547, 750, 1125, 1249
Bsp1407I	TGTACA	3 cut(s)	48, 414, 2397
Bsp143I	GATC	9 cut(s)	394, 684, 1378, 1705, 1804, 1880, 1972, 1985, 2500
Bsp19I	CCATGG	1 cut(s)	195
Bsp68I	TCGCGA	1 cut(s)	507
BspACI	CCGC	9 cut(s)	265, 271, 286, 704, 1451, 1465, 1615, 2204, 2635
BspANI	GGCC	5 cut(s)	92, 1261, 1431, 2272, 2414
BspCNI	CTCAG	4 cut(s)	788, 1759, 2344, 2509
BspFNI	CGCG	3 cut(s)	138, 273, 507
BspHI	TCATGA	1 cut(s)	798
BspLI	GGNNCC	5 cut(s)	522, 539, 1248, 1269, 1806
BspPI	GGATC	5 cut(s)	1713, 1799, 1812, 1967, 1993
BspQI	GCTCTTC	1 cut(s)	964
BspT107I	GGYRCC	1 cut(s)	537
BspTI	CTTAAG	1 cut(s)	1720
BspTNI	GGTCTC	2 cut(s)	1373, 2251
BsrDI	GCAATG	3 cut(s)	585, 755, 1489
BsrFI	RCCGGY	1 cut(s)	1521
BsrGI	TGTACA	3 cut(s)	48, 414, 2397
BsrI	ACTGG	9 cut(s)	259, 1069, 1262, 1296, 1777, 1851, 2286, 2644, 2652
BssAI	RCCGGY	1 cut(s)	1521
BssECI	CCNNGG	7 cut(s)	195, 516, 657, 1338, 1510, 2267, 2477
BssMI	GATC	9 cut(s)	394, 684, 1378, 1705, 1804, 1880, 1972, 1985, 2500
BssSI	CACGAG	2 cut(s)	1700, 2371
BssT1I	CCWWGG	3 cut(s)	195, 516, 2267
Bst2BI	CACGAG	2 cut(s)	1700, 2371
Bst2UI	CCWGG	7 cut(s)	658, 834, 860, 1018, 1251, 1340, 1511
Bst4CI	ACNGT	7 cut(s)	1103, 1633, 1675, 1681, 2081, 2125, 2253
Bst6I	CTCTTC	5 cut(s)	41, 170, 467, 603, 964
BstAFI	CTTAAG	1 cut(s)	1720
BstAUI	TGTACA	3 cut(s)	48, 414, 2397
BstC8I	GCNNGC	7 cut(s)	136, 727, 1209, 1400, 1480, 2484, 2488
BstDEI	CTNAG	8 cut(s)	78, 775, 1739, 1767, 2200, 2274, 2352, 2517
BstDSI	CCRYGG	1 cut(s)	195
BstF5I	GGATG	3 cut(s)	628, 1369, 2113
BstFNI	CGCG	3 cut(s)	138, 273, 507
BstH2I	RGCGCY	1 cut(s)	283
BstHHI	GCGC	3 cut(s)	140, 275, 282
BstKTI	GATC	9 cut(s)	397, 687, 1381, 1708, 1807, 1883, 1975, 1988, 2503
BstMAI	GTCTC	5 cut(s)	38, 109, 1373, 1827, 2251
BstMBI	GATC	9 cut(s)	394, 684, 1378, 1705, 1804, 1880, 1972, 1985, 2500
BstMCI	CGRYCG	1 cut(s)	1883
BstMWI	GCNNNNNNNGC	6 cut(s)	279, 1253, 1301, 1421, 1545, 2466
BstNI	CCWGG	7 cut(s)	658, 834, 860, 1018, 1251, 1340, 1511
BstNSI	RCATGY	2 cut(s)	2452, 2665
BstSCI	CCNGG	8 cut(s)	59, 656, 832, 858, 1016, 1249, 1338, 1509
BstSFI	CTRYAG	2 cut(s)	358, 2121
BstSLI	GKGCMC	2 cut(s)	547, 1125
BstUI	CGCG	3 cut(s)	138, 273, 507
BstV1I	GCAGC	4 cut(s)	94, 587, 1639, 2453
BstV2I	GAAGAC	4 cut(s)	441, 2097, 2350, 2451
BstX2I	RGATCY	5 cut(s)	1378, 1705, 1804, 1985, 2500
BstYI	RGATCY	5 cut(s)	1378, 1705, 1804, 1985, 2500
Bsu36I	CCTNAGG	1 cut(s)	2352
BsuI	GTATCC	3 cut(s)	1958, 2173, 2200
BsuRI	GGCC	5 cut(s)	92, 1261, 1431, 2272, 2414
BtgI	CCRYGG	1 cut(s)	195
BtsCI	GGATG	3 cut(s)	628, 1369, 2113
BtsI	GCAGTG	1 cut(s)	1589
BtsIMutI	CAGTG	6 cut(s)	1108, 1269, 1321, 1589, 1686, 1784
BtuMI	TCGCGA	1 cut(s)	507
Cac8I	GCNNGC	7 cut(s)	136, 727, 1209, 1400, 1480, 2484, 2488
CciI	TCATGA	1 cut(s)	798
CfoI	GCGC	3 cut(s)	140, 275, 282
Cfr10I	RCCGGY	1 cut(s)	1521
Cfr13I	GGNCC	3 cut(s)	520, 1429, 2438
CseI	GACGC	1 cut(s)	1844
Csp6I	GTAC	4 cut(s)	49, 415, 2398, 2668
CspAI	ACCGGT	1 cut(s)	1521
CspCI	CAANNNNNGTGG	2 cut(s)	1245, 1280
CviQI	GTAC	4 cut(s)	49, 415, 2398, 2668
DdeI	CTNAG	8 cut(s)	78, 775, 1739, 1767, 2200, 2274, 2352, 2517
DpnI	GATC	9 cut(s)	396, 686, 1380, 1707, 1806, 1882, 1974, 1987, 2502
DpnII	GATC	9 cut(s)	394, 684, 1378, 1705, 1804, 1880, 1972, 1985, 2500
DraI	TTTAAA	2 cut(s)	618, 2019
DrdI	GACNNNNNNGTC	1 cut(s)	332
DriI	GACNNNNNGTC	1 cut(s)	259
DseDI	GACNNNNNNGTC	1 cut(s)	332
EaeI	YGGCCR	1 cut(s)	90
Eam1104I	CTCTTC	5 cut(s)	41, 170, 467, 603, 964
Eam1105I	GACNNNNNGTC	1 cut(s)	259
EarI	CTCTTC	5 cut(s)	41, 170, 467, 603, 964
EciI	GGCGGA	2 cut(s)	1466, 1480
Eco130I	CCWWGG	3 cut(s)	195, 516, 2267
Eco147I	AGGCCT	2 cut(s)	2272, 2414
Eco24I	GRGCYC	2 cut(s)	750, 1249
Eco31I	GGTCTC	2 cut(s)	1373, 2251
Eco47I	GGWCC	2 cut(s)	520, 2438
Eco57I	CTGAAG	5 cut(s)	507, 546, 913, 2441, 2463
Eco81I	CCTNAGG	1 cut(s)	2352
Eco88I	CYCGRG	1 cut(s)	749
EcoO109I	RGGNCCY	1 cut(s)	2438
EcoRI	GAATTC	1 cut(s)	2003
EcoRII	CCWGG	7 cut(s)	656, 832, 858, 1016, 1249, 1338, 1509
EcoT14I	CCWWGG	3 cut(s)	195, 516, 2267
EcoT22I	ATGCAT	1 cut(s)	1507
EcoT38I	GRGCYC	2 cut(s)	750, 1249
ErhI	CCWWGG	3 cut(s)	195, 516, 2267
Esp3I	CGTCTC	2 cut(s)	109, 1827
FalI	AAGNNNNNCTT	6 cut(s)	71, 103, 611, 643, 1191, 1223
FaqI	GGGAC	6 cut(s)	112, 247, 260, 491, 506, 782
FauI	CCCGC	2 cut(s)	272, 293
FblI	GTMKAC	1 cut(s)	345
Fnu4HI	GCNGC	4 cut(s)	83, 576, 1653, 2467
FokI	GGATG	3 cut(s)	635, 1376, 2120
FriOI	GRGCYC	2 cut(s)	750, 1249
Fsp4HI	GCNGC	4 cut(s)	83, 576, 1653, 2467
FspBI	CTAG	5 cut(s)	158, 1151, 2435, 2463, 2576
GlaI	GCGC	3 cut(s)	139, 274, 281
GluI	GCNGC	4 cut(s)	83, 576, 1653, 2467
GsaI	CCCAGC	2 cut(s)	247, 280
GsuI	CTGGAG	3 cut(s)	242, 1233, 2303
HaeII	RGCGCY	1 cut(s)	283
HaeIII	GGCC	5 cut(s)	92, 1261, 1431, 2272, 2414
HapII	CCGG	5 cut(s)	61, 428, 444, 1162, 1522
HgaI	GACGC	1 cut(s)	1844
HhaI	GCGC	3 cut(s)	140, 275, 282
Hin6I	GCGC	3 cut(s)	138, 273, 280
HinP1I	GCGC	3 cut(s)	138, 273, 280
HincII	GTYRAC	1 cut(s)	1141
HindII	GTYRAC	1 cut(s)	1141
HindIII	AAGCTT	1 cut(s)	1133
HpaII	CCGG	5 cut(s)	61, 428, 444, 1162, 1522
HphI	GGTGA	4 cut(s)	614, 1463, 2177, 2299
Hpy166II	GTNNAC	4 cut(s)	346, 545, 1123, 1141
Hpy188III	TCNNGA	9 cut(s)	506, 718, 799, 1436, 1907, 1934, 2029, 2073, 2371
Hpy8I	GTNNAC	4 cut(s)	346, 545, 1123, 1141
Hpy99I	CGWCG	8 cut(s)	230, 242, 308, 311, 314, 317, 320, 338
HpyCH4III	ACNGT	7 cut(s)	1103, 1633, 1675, 1681, 2081, 2125, 2253
HpyCH4IV	ACGT	2 cut(s)	318, 987
HpyF10VI	GCNNNNNNNGC	6 cut(s)	279, 1253, 1301, 1421, 1545, 2466
HpyF3I	CTNAG	8 cut(s)	78, 775, 1739, 1767, 2200, 2274, 2352, 2517
HpySE526I	ACGT	2 cut(s)	318, 987
HspAI	GCGC	3 cut(s)	138, 273, 280
Kzo9I	GATC	9 cut(s)	394, 684, 1378, 1705, 1804, 1880, 1972, 1985, 2500
LguI	GCTCTTC	1 cut(s)	964
LmnI	GCTCC	5 cut(s)	27, 117, 1252, 1273, 1309
Lsp1109I	GCAGC	4 cut(s)	94, 587, 1639, 2453
LweI	GCATC	2 cut(s)	877, 1411
MaeI	CTAG	5 cut(s)	158, 1151, 2435, 2463, 2576
MaeII	ACGT	2 cut(s)	318, 987
MaeIII	GTNAC	4 cut(s)	602, 1675, 2639, 2705
MalI	GATC	9 cut(s)	396, 686, 1380, 1707, 1806, 1882, 1974, 1987, 2502
MboI	GATC	9 cut(s)	394, 684, 1378, 1705, 1804, 1880, 1972, 1985, 2500
MfeI	CAATTG	1 cut(s)	839
MflI	RGATCY	5 cut(s)	1378, 1705, 1804, 1985, 2500
MhlI	GDGCHC	4 cut(s)	547, 750, 1125, 1249
MlsI	TGGCCA	1 cut(s)	92
MluNI	TGGCCA	1 cut(s)	92
MlyI	GAGTC	5 cut(s)	3, 434, 473, 2087, 2467
MmeI	TCCRAC	4 cut(s)	80, 348, 878, 2157
Mox20I	TGGCCA	1 cut(s)	92
Mph1103I	ATGCAT	1 cut(s)	1507
MroXI	GAANNNNTTC	1 cut(s)	2543
MscI	TGGCCA	1 cut(s)	92
MslI	CAYNNNNRTG	3 cut(s)	873, 2688, 2730
Msp20I	TGGCCA	1 cut(s)	92
MspA1I	CMGCKG	1 cut(s)	2236
MspCI	CTTAAG	1 cut(s)	1720
MspI	CCGG	5 cut(s)	61, 428, 444, 1162, 1522
MspR9I	CCNGG	8 cut(s)	61, 658, 834, 860, 1018, 1251, 1340, 1511
MunI	CAATTG	1 cut(s)	839
MvaI	CCWGG	7 cut(s)	658, 834, 860, 1018, 1251, 1340, 1511
MvnI	CGCG	3 cut(s)	138, 273, 507
MwoI	GCNNNNNNNGC	6 cut(s)	279, 1253, 1301, 1421, 1545, 2466
NciI	CCSGG	1 cut(s)	61
NcoI	CCATGG	1 cut(s)	195
NdeII	GATC	9 cut(s)	394, 684, 1378, 1705, 1804, 1880, 1972, 1985, 2500
NlaIV	GGNNCC	5 cut(s)	522, 539, 1248, 1269, 1806
NmeAIII	GCCGAG	1 cut(s)	2458
NmuCI	GTSAC	2 cut(s)	602, 2705
NruI	TCGCGA	1 cut(s)	507
NsiI	ATGCAT	1 cut(s)	1507
NspI	RCATGY	2 cut(s)	2452, 2665
OliI	CACNNNNGTG	1 cut(s)	2688
PagI	TCATGA	1 cut(s)	798
PceI	AGGCCT	2 cut(s)	2272, 2414
PciI	ACATGT	2 cut(s)	2448, 2661
PciSI	GCTCTTC	1 cut(s)	964
PcsI	WCGNNNNNNNCGW	9 cut(s)	198, 222, 234, 303, 309, 312, 315, 321, 1789
PdmI	GAANNNNTTC	1 cut(s)	2543
PflMI	CCANNNNNTGG	2 cut(s)	1117, 1691
PfoI	TCCNGGA	2 cut(s)	832, 858
PinAI	ACCGGT	1 cut(s)	1521
PkrI	GCNGC	4 cut(s)	84, 577, 1654, 2468
Ple19I	CGATCG	1 cut(s)	1883
PleI	GAGTC	5 cut(s)	3, 434, 473, 2087, 2467
PpsI	GAGTC	5 cut(s)	3, 434, 473, 2087, 2467
PpuMI	RGGWCCY	1 cut(s)	2438
PscI	ACATGT	2 cut(s)	2448, 2661
Psp5II	RGGWCCY	1 cut(s)	2438
Psp6I	CCWGG	7 cut(s)	656, 832, 858, 1016, 1249, 1338, 1509
PspFI	CCCAGC	2 cut(s)	243, 276
PspGI	CCWGG	7 cut(s)	656, 832, 858, 1016, 1249, 1338, 1509
PspN4I	GGNNCC	5 cut(s)	522, 539, 1248, 1269, 1806
PspPI	GGNCC	3 cut(s)	520, 1429, 2438
PspPPI	RGGWCCY	1 cut(s)	2438
PsrI	GAACNNNNNNTAC	4 cut(s)	968, 1000, 1717, 1749
PsuI	RGATCY	5 cut(s)	1378, 1705, 1804, 1985, 2500
PvuI	CGATCG	1 cut(s)	1883
PvuII	CAGCTG	1 cut(s)	2236
RgaI	GCGATCGC	1 cut(s)	1883
RruI	TCGCGA	1 cut(s)	507
RsaI	GTAC	4 cut(s)	50, 416, 2399, 2669
RsaNI	GTAC	4 cut(s)	49, 415, 2398, 2668
RseI	CAYNNNNRTG	3 cut(s)	873, 2688, 2730
SapI	GCTCTTC	1 cut(s)	964
SatI	GCNGC	4 cut(s)	83, 576, 1653, 2467
Sau3AI	GATC	9 cut(s)	394, 684, 1378, 1705, 1804, 1880, 1972, 1985, 2500
Sau96I	GGNCC	3 cut(s)	520, 1429, 2438
SchI	GAGTC	5 cut(s)	3, 434, 473, 2087, 2467
ScrFI	CCNGG	8 cut(s)	61, 658, 834, 860, 1018, 1251, 1340, 1511
SduI	GDGCHC	4 cut(s)	547, 750, 1125, 1249
SfaAI	GCGATCGC	1 cut(s)	1883
SfaNI	GCATC	2 cut(s)	877, 1411
SfcI	CTRYAG	2 cut(s)	358, 2121
SgfI	GCGATCGC	1 cut(s)	1883
SinI	GGWCC	2 cut(s)	520, 2438
SmiI	ATTTAAAT	1 cut(s)	2019
SmiMI	CAYNNNNRTG	3 cut(s)	873, 2688, 2730
SmlI	CTYRAG	3 cut(s)	1006, 1720, 2408
SmoI	CTYRAG	3 cut(s)	1006, 1720, 2408
SseBI	AGGCCT	2 cut(s)	2272, 2414
SsiI	CCGC	9 cut(s)	265, 271, 286, 704, 1451, 1465, 1615, 2204, 2635
SspI	AATATT	1 cut(s)	1460
SspMI	CTAG	5 cut(s)	158, 1151, 2435, 2463, 2576
StuI	AGGCCT	2 cut(s)	2272, 2414
StyD4I	CCNGG	8 cut(s)	59, 656, 832, 858, 1016, 1249, 1338, 1509
StyI	CCWWGG	3 cut(s)	195, 516, 2267
SwaI	ATTTAAAT	1 cut(s)	2019
TaaI	ACNGT	7 cut(s)	1103, 1633, 1675, 1681, 2081, 2125, 2253
TaiI	ACGT	2 cut(s)	321, 990
TaqI	TCGA	2 cut(s)	252, 336
TatI	WGTACW	3 cut(s)	48, 414, 2397
TscAI	CASTG	6 cut(s)	1108, 1269, 1321, 1596, 1686, 1784
TseFI	GTSAC	2 cut(s)	602, 2705
TseI	GCWGC	4 cut(s)	82, 575, 1652, 2466
Tsp45I	GTSAC	2 cut(s)	602, 2705
TspGWI	ACGGA	2 cut(s)	14, 91
TspRI	CASTG	6 cut(s)	1108, 1269, 1321, 1596, 1686, 1784
Van91I	CCANNNNNTGG	2 cut(s)	1117, 1691
Vha464I	CTTAAG	1 cut(s)	1720
VneI	GTGCAC	2 cut(s)	543, 1121
VpaK11BI	GGWCC	2 cut(s)	520, 2438
XapI	RAATTY	3 cut(s)	667, 2003, 2192
XceI	RCATGY	2 cut(s)	2452, 2665
XcmI	CCANNNNNNNNNTGG	2 cut(s)	762, 2605
XmiI	GTMKAC	1 cut(s)	345
XmnI	GAANNNNTTC	1 cut(s)	2543
XspI	CTAG	5 cut(s)	158, 1151, 2435, 2463, 2576
Zsp2I	ATGCAT	1 cut(s)	1507

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.