Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0006941

Physical Location & Seq

Genomic Coordinates Reverse (-)

27919052 .. 27927279

Gene Structure 8228 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000023761

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2823 bp

ATGACCCGACTCTCGGAAAAGCTCCGTCTGTCTCTCTTCCTTCTTCTGTACAATCCAACCCGGTTTCTCTCTCCTCCTAAGCAGCTCTTGGCCACTCTCTCCGGCTCCACGCTCCACCTCGCACGCGCCATCGCCTCCAAAACCCTAGCCCTCTTCTTCTTCTTCTTAGCCATGGACGACCCCTTCCCCTTCGCCCCTCCCGACGGCGACAACGACGGCTGGGACTTCGACCTCCAGTCCCGCAACCGCGCCCAGCGCCCCCGCCTCCTTAACGACTACGACGACGACGACGACGACGTTTCCGACAATGCCGTCGATAAGGTCTACCTCGTTCCCTACAGGTGGTGGAAGGAGGTTCGGACCGAAGGCGATGATCGTGGCGAAGGGGTGTTGTACAGTACTTCGCCGGAGGAAGACGACTCCGGCTCGGAAATTGTGTTGAGTTTGAGGAAGAGGGACTCTGCTGAAGAAGGGTTTTCAGGTCGCGAGTATGCCTTGGTCCCTGAAGCGACATGGTGCCGCGCACTCATACGGCATTATGATTTTAATACAGCAGCAATGGATAATGTGAGCTTCTTTGGTGGTGAAGAGTTTTTAAAGGATGTCTTTTCTTTACAAATTAGGCTCTTTGTTTCCTGGGAAACAAATTCGTTGGTTGTAAAGATCAGCCAAAAGGATAATGTGGTTGATTCTTTCAAGAGAGCCTGCATTATTTTCAGTTCGGAGCCTGAGCCATTGCATATTTGGGACTTCTCAGGGCAGACAACCCAATTTTTCATGAATGACAGAATTAGTTTGCCAAATGACATTCCTGGACAACTGAACAAAGAGATTGTCCTGGAATTGCATCTTAATGGATTTTCAGAGGTCAGAGGTTGGAGGAGTGATGACATGGCTGAAAACCACTTCAGTATTGATGGTTGTATTAGTGGTGGCTCTTCTAAAATGAATGGGAACATTTACTACGTCAATCCCTACTTAAACTCAAGCAACTCCTGGCGAAGTGCTGTTATGTATAGAGGAGTTGGTTCTTTAGGCTTAACTGGTATAAAGAATCTTGGGAATACTTGTTTTATGAACAGTGCAATCCAATGTTTGGTGCACACTCCAAAGCTTGTTGACTACTTTCTAGGAGATTACCGGAAGGACATGAACTATCAGAACCCATTGGGAATGAAGGGAGAGCTTGCTTTTGCATTTGGAGAATTATTGAGGAGATTATGGGCTCCAGGTGCAAGGCCAGTGGCTCCAAGAATGTTCAAGCAAAAACTTGCCAGTTTTGCTCCTCAATTCAGTGGCTATAATCAACATGATTCCCAGGAACTCCTTGCTTTTTTGCTGGATGGTCTCCATGAAGATCTAAATCGTGTGAAATGCAAGCCATATTTTGAAGCTAAAGATGCAGAGGGTCGTCCAGATGAAGAAGTGGCGGAAGAATATTGGCGGAATCACCTTGCTCGCAATGATTCCATTATTGTTAATGCATACCAGGGTCAATACCGGTCAAAATTGGTTTGCCCCGATTGCAACAAGGTGTCCATTACATTTGACCCATTTATGTATCTATCACTGCCATTACCTTCTACAACAATGCGGAGTATGACTTTGACGGTTTTAAGCACAGATGGTGCTGCGTTGCGTACTACATTTACTGTAACAGTGCCAAAGAGTGGGAGGCTCGTGGATCTTACTGAAGCCTTAAGTATTGCCTGTTCTCTAAGAGATGATGAAACCCTGTTGGTGGCTGAGATATACCAGTGTCGCATATTTCGTCTATTGGAGGATCCATCTGATTCATTAGCCTTTGTTAGAGACGCTGACAAACTGGTTGCTTATCGCTTACCAAAAGATTTTGAGCGATCGCACTTGGTTGTGTTTCTTCATCAGGAGAAGGGAAAGTATTACTATAATCAAGACACAATTGGTATCCCACTTTTAGCAAGGGTGTCTGATCCTTGTTATGGATCTAATATTCGCAACGAATTCGTAAATAATTTAAATCCATTCTTGAAGCCTGATGGAGATATATCAGATGTTTTTGATGATGATTCTGGAAACTGTGCTAATGAAGACTCTAACAAGGAGGATGACAGTAGTCCTACAGTTTGGGATAATGATTCTGACACAGACAGGGAAACAATGGGTGAAGCGCTGTTGGATACTGACTTCAAATTTTACTTAGCAGATACAAGAAAGGAAATAGAGTTGAATCAGCTGATAGAGGTCTCACGGTTGCCTGTGCTACCAAGGCCTAAGATACTGGAGGTGATTGTTTTATGGACAGATGAGATGATTAACAAGTATGATACATGCCTTCTAAACTCTTTGCCTGAGGTCTTCAACATTTTCACGAGTAGTGAAGAATCTGTTTCCCTGTACAAATGCCTTGAGGCCTTTCTGAAGGAAGAACCTCTAGGACCTGAAGACATGTGGTTCTGCCCTAGCTGCAAGACTCCTCGGCAAGCCAGCAAAAAGTTAGATCTTTGGAGATTGCCTGAGATATTGGTTGTTCATCTGAAAAGATTCTCGTATGACCATTATTTTAAGAACAAGCTAGAAACATTAGTTGATTTTCCCATTTATGATATGGACATCTCAACATACATTACCCACCGCAGTAACCAGTTATCCAGTCGATACATGTTGTACGCAATCAGTAATCACTATGGTGGCTTGGGTGGTGGTCACTATACGGCATTTGTTCATCTCGGTAAGGGTTCATGGTACGAGTTTGATGATGACAGAGTTTCTGCTGTTAATGAGGAGAGGATTAAGACTTCGGCAGCATATGTTCTTTTCTACCGAAGAGTACCAGATGTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04137 map04137

Pfam Domains

Protein Families

UCH

Protein Analysis

941

Amino Acids

107.51

Weight (kDa)

4.94

Isoelectric Point (pI)

43.75

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ubiquitin_UBP8	PF25242	207 - 261	2.8e-30	UBP8-like, ubiquitin-like domain
UCH	PF00443	348 - 934	1.4e-73	Ubiquitin carboxyl-terminal hydrolase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006941)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g20680 FvH4_6g20680 FvH4_6g20680
malus_domestica	MD00G1072700.v1.1 MD12G1043100.v1.1 MD14G1042200.v1.1
prunus_persica	Prupe.7G091700_v2.0.a1 Prupe.7G091700_v2.0.a1 Prupe.7G091700_v2.0.a1 Prupe.7G091700_v2.0.a1
pyrus_communis	pycom12g03720 pycom14g03580
rosa_chinensis	RchiOBHm_Chr3g0476581
rosa_laevigata	RLG00000001984 RLG00000023761
rosa_multiflora	Rmu_sc0008241.1_g000007 Rmu_sc0020945.1_g000001
rosa_roxburghii	Rroxscaffold_6G00405190
rosa_rugosa	Rorug03G0155400
rosa_samantha	Rh3AG206000 Rh3BG238600 Rh3CG232300 Rh3DG232200 Rh7DG310400
rosa_wichuraiana	Rw3G018760 Rw7G026340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	311
AccB1I	GGYRCC	1 cut(s)	516
AccB7I	CCANNNNNTGG	2 cut(s)	1096, 1670
AccI	GTMKAC	1 cut(s)	324
AccII	CGCG	4 cut(s)	126, 249, 486, 522
AciI	CCGC	8 cut(s)	241, 247, 262, 520, 1430, 1444, 1594, 2614
AclWI	GGATC	5 cut(s)	1692, 1778, 1791, 1946, 1972
AcoI	YGGCCR	1 cut(s)	90
AcsI	RAATTY	3 cut(s)	646, 1982, 2171
AcuI	CTGAAG	6 cut(s)	486, 525, 892, 1713, 2420, 2442
AfaI	GTAC	8 cut(s)	50, 395, 400, 1642, 2378, 2648, 2726, 2811
AfeI	AGCGCT	1 cut(s)	2151
AfiI	CCNNNNNNNGG	7 cut(s)	13, 203, 342, 1096, 1670, 1741, 1961
AflII	CTTAAG	1 cut(s)	1699
AflIII	ACRYGT	2 cut(s)	2427, 2640
AgeI	ACCGGT	1 cut(s)	1500
AgsI	TTSAA	7 cut(s)	697, 1261, 1391, 2011, 2170, 2209, 2341
AhdI	GACNNNNNGTC	1 cut(s)	235
AjnI	CCWGG	7 cut(s)	635, 811, 837, 995, 1228, 1317, 1488
AleI	CACNNNNGTG	1 cut(s)	2667
AluBI	AGCT	9 cut(s)	22, 85, 573, 1114, 1186, 1394, 2215, 2445, 2554
AluI	AGCT	9 cut(s)	22, 85, 573, 1114, 1186, 1394, 2215, 2445, 2554
Alw21I	GWGCWC	1 cut(s)	1104
Alw26I	GTCTC	4 cut(s)	36, 1352, 1806, 2230
Alw44I	GTGCAC	1 cut(s)	1100
AlwI	GGATC	5 cut(s)	1692, 1778, 1791, 1946, 1972
Aor51HI	AGCGCT	1 cut(s)	2151
AoxI	GGCC	4 cut(s)	90, 1238, 2249, 2391
ApaLI	GTGCAC	1 cut(s)	1100
ApeKI	GCWGC	5 cut(s)	82, 554, 1631, 2445, 2783
ApoI	RAATTY	3 cut(s)	646, 1982, 2171
ArsI	GACNNNNNNTTYG	2 cut(s)	819, 851
AsiGI	ACCGGT	1 cut(s)	1500
AsiSI	GCGATCGC	1 cut(s)	1862
Asp700I	GAANNNNTTC	1 cut(s)	2522
AspLEI	GCGC	5 cut(s)	128, 251, 258, 524, 2152
AspS9I	GGNCC	3 cut(s)	360, 499, 2417
AsuC2I	CCSGG	1 cut(s)	61
AsuHPI	GGTGA	4 cut(s)	596, 1442, 2156, 2278
AvaII	GGWCC	3 cut(s)	360, 499, 2417
AxyI	CCTNAGG	1 cut(s)	2331
BaeGI	GKGCMC	1 cut(s)	1104
BalI	TGGCCA	1 cut(s)	92
BamHI	GGATCC	1 cut(s)	1783
BanI	GGYRCC	1 cut(s)	516
BanII	GRGCYC	1 cut(s)	1228
BauI	CACGAG	2 cut(s)	1679, 2350
BbsI	GAAGAC	4 cut(s)	420, 2076, 2329, 2430
Bbv12I	GWGCWC	1 cut(s)	1104
BbvI	GCAGC	5 cut(s)	94, 566, 1618, 2432, 2795
BccI	CCATC	6 cut(s)	137, 911, 1337, 1619, 1795, 2012
BceAI	ACGGC	5 cut(s)	220, 232, 296, 548, 2709
BcgI	CGANNNNNNTGC	2 cut(s)	1966, 2000
BciT130I	CCWGG	7 cut(s)	637, 813, 839, 997, 1230, 1319, 1490
BciVI	GTATCC	2 cut(s)	1937, 2152
BcnI	CCSGG	1 cut(s)	61
BcoDI	GTCTC	4 cut(s)	36, 1352, 1806, 2230
BfaI	CTAG	5 cut(s)	146, 1130, 2414, 2442, 2555
BfmI	CTRYAG	2 cut(s)	337, 2100
BfoI	RGCGCY	2 cut(s)	259, 2153
BfrI	CTTAAG	1 cut(s)	1699
BfuI	GTATCC	2 cut(s)	1937, 2152
BglII	AGATCT	2 cut(s)	1357, 2479
BisI	GCNGC	6 cut(s)	83, 520, 555, 1632, 2446, 2784
BlsI	GCNGC	6 cut(s)	84, 521, 556, 1633, 2447, 2785
BmcAI	AGTACT	1 cut(s)	400
Bme1390I	CCNGG	8 cut(s)	61, 637, 813, 839, 997, 1230, 1319, 1490
Bme18I	GGWCC	3 cut(s)	360, 499, 2417
BmeRI	GACNNNNNGTC	1 cut(s)	235
BmgT120I	GGNCC	3 cut(s)	360, 499, 2417
BmiI	GGNNCC	7 cut(s)	106, 501, 518, 726, 1227, 1248, 1785
BmrFI	CCNGG	8 cut(s)	61, 637, 813, 839, 997, 1230, 1319, 1490
BmsI	GCATC	2 cut(s)	856, 1390
BoxI	GACNNNNGTC	1 cut(s)	2094
BpiI	GAAGAC	4 cut(s)	420, 2076, 2329, 2430
BpmI	CTGGAG	3 cut(s)	218, 1212, 2282
Bpu10I	CCTNAGC	2 cut(s)	78, 729
BpuEI	CTTGAG	2 cut(s)	970, 2408
BpuMI	CCSGG	1 cut(s)	61
BsaBI	GATNNNNATC	1 cut(s)	1362
BsaI	GGTCTC	2 cut(s)	1352, 2230
BsaJI	CCNNGG	7 cut(s)	171, 495, 636, 1317, 1489, 2246, 2456
BsaWI	WCCGGW	2 cut(s)	1140, 1500
Bsc4I	CCNNNNNNNGG	7 cut(s)	13, 203, 342, 1096, 1670, 1741, 1961
Bse118I	RCCGGY	1 cut(s)	1500
Bse1I	ACTGG	9 cut(s)	235, 1048, 1241, 1275, 1756, 1830, 2265, 2623, 2631
Bse21I	CCTNAGG	1 cut(s)	2331
Bse3DI	GCAATG	3 cut(s)	564, 734, 1468
Bse8I	GATNNNNATC	1 cut(s)	1362
BseBI	CCWGG	7 cut(s)	637, 813, 839, 997, 1230, 1319, 1490
BseDI	CCNNGG	7 cut(s)	171, 495, 636, 1317, 1489, 2246, 2456
BseGI	GGATG	3 cut(s)	607, 1348, 2092
BseJI	GATNNNNATC	1 cut(s)	1362
BseLI	CCNNNNNNNGG	7 cut(s)	13, 203, 342, 1096, 1670, 1741, 1961
BseMI	GCAATG	3 cut(s)	564, 734, 1468
BseMII	CTCAG	5 cut(s)	720, 768, 1737, 2322, 2487
BseNI	ACTGG	9 cut(s)	235, 1048, 1241, 1275, 1756, 1830, 2265, 2623, 2631
BseRI	GAGGAG	7 cut(s)	63, 895, 1035, 1228, 1275, 2445, 2777
BseSI	GKGCMC	1 cut(s)	1104
BseXI	GCAGC	5 cut(s)	94, 566, 1618, 2432, 2795
BseYI	CCCAGC	2 cut(s)	219, 252
Bsh1236I	CGCG	4 cut(s)	126, 249, 486, 522
Bsh1285I	CGRYCG	1 cut(s)	1862
BshFI	GGCC	4 cut(s)	92, 1240, 2251, 2393
BshNI	GGYRCC	1 cut(s)	516
BshTI	ACCGGT	1 cut(s)	1500
BsiEI	CGRYCG	1 cut(s)	1862
BsiHKAI	GWGCWC	1 cut(s)	1104
BsiSI	CCGG	6 cut(s)	61, 102, 407, 423, 1141, 1501
BslFI	GGGAC	5 cut(s)	223, 236, 470, 485, 761
BslI	CCNNNNNNNGG	7 cut(s)	13, 203, 342, 1096, 1670, 1741, 1961
BsmAI	GTCTC	4 cut(s)	36, 1352, 1806, 2230
BsmBI	CGTCTC	1 cut(s)	1806
BsmFI	GGGAC	5 cut(s)	223, 236, 470, 485, 761
BsnI	GGCC	4 cut(s)	92, 1240, 2251, 2393
Bso31I	GGTCTC	2 cut(s)	1352, 2230
Bsp1286I	GDGCHC	2 cut(s)	1104, 1228
Bsp1407I	TGTACA	3 cut(s)	48, 393, 2376
Bsp143I	GATC	9 cut(s)	373, 663, 1357, 1684, 1783, 1859, 1951, 1964, 2479
Bsp19I	CCATGG	1 cut(s)	171
Bsp68I	TCGCGA	1 cut(s)	486
BspACI	CCGC	8 cut(s)	241, 247, 262, 520, 1430, 1444, 1594, 2614
BspANI	GGCC	4 cut(s)	92, 1240, 2251, 2393
BspCNI	CTCAG	5 cut(s)	721, 767, 1738, 2323, 2488
BspFNI	CGCG	4 cut(s)	126, 249, 486, 522
BspHI	TCATGA	1 cut(s)	777
BspLI	GGNNCC	7 cut(s)	106, 501, 518, 726, 1227, 1248, 1785
BspPI	GGATC	5 cut(s)	1692, 1778, 1791, 1946, 1972
BspQI	GCTCTTC	1 cut(s)	943
BspT107I	GGYRCC	1 cut(s)	516
BspTI	CTTAAG	1 cut(s)	1699
BspTNI	GGTCTC	2 cut(s)	1352, 2230
BsrDI	GCAATG	3 cut(s)	564, 734, 1468
BsrFI	RCCGGY	1 cut(s)	1500
BsrGI	TGTACA	3 cut(s)	48, 393, 2376
BsrI	ACTGG	9 cut(s)	235, 1048, 1241, 1275, 1756, 1830, 2265, 2623, 2631
BssAI	RCCGGY	1 cut(s)	1500
BssECI	CCNNGG	7 cut(s)	171, 495, 636, 1317, 1489, 2246, 2456
BssMI	GATC	9 cut(s)	373, 663, 1357, 1684, 1783, 1859, 1951, 1964, 2479
BssSI	CACGAG	2 cut(s)	1679, 2350
BssT1I	CCWWGG	3 cut(s)	171, 495, 2246
Bst2BI	CACGAG	2 cut(s)	1679, 2350
Bst2UI	CCWGG	7 cut(s)	637, 813, 839, 997, 1230, 1319, 1490
Bst4CI	ACNGT	9 cut(s)	398, 1082, 1612, 1654, 1660, 2060, 2093, 2104, 2232
Bst6I	CTCTTC	6 cut(s)	41, 158, 446, 582, 943, 2800
BstAFI	CTTAAG	1 cut(s)	1699
BstAUI	TGTACA	3 cut(s)	48, 393, 2376
BstC8I	GCNNGC	7 cut(s)	124, 706, 1188, 1379, 1459, 2463, 2467
BstDSI	CCRYGG	1 cut(s)	171
BstF5I	GGATG	3 cut(s)	607, 1348, 2092
BstFNI	CGCG	4 cut(s)	126, 249, 486, 522
BstH2I	RGCGCY	2 cut(s)	259, 2153
BstHHI	GCGC	5 cut(s)	128, 251, 258, 524, 2152
BstKTI	GATC	9 cut(s)	376, 666, 1360, 1687, 1786, 1862, 1954, 1967, 2482
BstMAI	GTCTC	4 cut(s)	36, 1352, 1806, 2230
BstMBI	GATC	9 cut(s)	373, 663, 1357, 1684, 1783, 1859, 1951, 1964, 2479
BstMCI	CGRYCG	1 cut(s)	1862
BstMWI	GCNNNNNNNGC	7 cut(s)	255, 1232, 1280, 1400, 1524, 2248, 2445
BstNI	CCWGG	7 cut(s)	637, 813, 839, 997, 1230, 1319, 1490
BstNSI	RCATGY	3 cut(s)	2313, 2431, 2644
BstPAI	GACNNNNGTC	1 cut(s)	2094
BstSCI	CCNGG	8 cut(s)	59, 635, 811, 837, 995, 1228, 1317, 1488
BstSFI	CTRYAG	2 cut(s)	337, 2100
BstSLI	GKGCMC	1 cut(s)	1104
BstUI	CGCG	4 cut(s)	126, 249, 486, 522
BstV1I	GCAGC	5 cut(s)	94, 566, 1618, 2432, 2795
BstV2I	GAAGAC	4 cut(s)	420, 2076, 2329, 2430
BstX2I	RGATCY	5 cut(s)	1357, 1684, 1783, 1964, 2479
BstYI	RGATCY	5 cut(s)	1357, 1684, 1783, 1964, 2479
Bsu36I	CCTNAGG	1 cut(s)	2331
BsuI	GTATCC	2 cut(s)	1937, 2152
BsuRI	GGCC	4 cut(s)	92, 1240, 2251, 2393
BtgI	CCRYGG	1 cut(s)	171
BtgZI	GCGATG	2 cut(s)	115, 384
BtsCI	GGATG	3 cut(s)	607, 1348, 2092
BtsI	GCAGTG	1 cut(s)	1568
BtsIMutI	CAGTG	6 cut(s)	1087, 1248, 1300, 1568, 1665, 1763
BtuMI	TCGCGA	1 cut(s)	486
Cac8I	GCNNGC	7 cut(s)	124, 706, 1188, 1379, 1459, 2463, 2467
CciI	TCATGA	1 cut(s)	777
CfoI	GCGC	5 cut(s)	128, 251, 258, 524, 2152
Cfr10I	RCCGGY	1 cut(s)	1500
Cfr13I	GGNCC	3 cut(s)	360, 499, 2417
CpoI	CGGWCCG	1 cut(s)	360
CseI	GACGC	1 cut(s)	1823
Csp6I	GTAC	8 cut(s)	49, 394, 399, 1641, 2377, 2647, 2725, 2810
CspAI	ACCGGT	1 cut(s)	1500
CspCI	CAANNNNNGTGG	2 cut(s)	1224, 1259
CspI	CGGWCCG	1 cut(s)	360
CviQI	GTAC	8 cut(s)	49, 394, 399, 1641, 2377, 2647, 2725, 2810
DpnI	GATC	9 cut(s)	375, 665, 1359, 1686, 1785, 1861, 1953, 1966, 2481
DpnII	GATC	9 cut(s)	373, 663, 1357, 1684, 1783, 1859, 1951, 1964, 2479
DraI	TTTAAA	2 cut(s)	597, 1998
DrdI	GACNNNNNNGTC	1 cut(s)	311
DriI	GACNNNNNGTC	1 cut(s)	235
DseDI	GACNNNNNNGTC	1 cut(s)	311
EaeI	YGGCCR	1 cut(s)	90
Eam1104I	CTCTTC	6 cut(s)	41, 158, 446, 582, 943, 2800
Eam1105I	GACNNNNNGTC	1 cut(s)	235
EarI	CTCTTC	6 cut(s)	41, 158, 446, 582, 943, 2800
EciI	GGCGGA	2 cut(s)	1445, 1459
Eco130I	CCWWGG	3 cut(s)	171, 495, 2246
Eco147I	AGGCCT	2 cut(s)	2251, 2393
Eco24I	GRGCYC	1 cut(s)	1228
Eco31I	GGTCTC	2 cut(s)	1352, 2230
Eco47I	GGWCC	3 cut(s)	360, 499, 2417
Eco47III	AGCGCT	1 cut(s)	2151
Eco57I	CTGAAG	6 cut(s)	486, 525, 892, 1713, 2420, 2442
Eco81I	CCTNAGG	1 cut(s)	2331
EcoO109I	RGGNCCY	1 cut(s)	2417
EcoRI	GAATTC	1 cut(s)	1982
EcoRII	CCWGG	7 cut(s)	635, 811, 837, 995, 1228, 1317, 1488
EcoT14I	CCWWGG	3 cut(s)	171, 495, 2246
EcoT22I	ATGCAT	1 cut(s)	1486
EcoT38I	GRGCYC	1 cut(s)	1228
ErhI	CCWWGG	3 cut(s)	171, 495, 2246
Esp3I	CGTCTC	1 cut(s)	1806
FalI	AAGNNNNNCTT	4 cut(s)	71, 103, 590, 622
FaqI	GGGAC	5 cut(s)	223, 236, 470, 485, 761
FauI	CCCGC	2 cut(s)	248, 269
FauNDI	CATATG	1 cut(s)	2788
FblI	GTMKAC	1 cut(s)	324
Fnu4HI	GCNGC	6 cut(s)	83, 520, 555, 1632, 2446, 2784
FokI	GGATG	3 cut(s)	614, 1355, 2099
FriOI	GRGCYC	1 cut(s)	1228
Fsp4HI	GCNGC	6 cut(s)	83, 520, 555, 1632, 2446, 2784
FspBI	CTAG	5 cut(s)	146, 1130, 2414, 2442, 2555
GlaI	GCGC	5 cut(s)	127, 250, 257, 523, 2151
GluI	GCNGC	6 cut(s)	83, 520, 555, 1632, 2446, 2784
GsaI	CCCAGC	2 cut(s)	223, 256
GsuI	CTGGAG	3 cut(s)	218, 1212, 2282
HaeII	RGCGCY	2 cut(s)	259, 2153
HaeIII	GGCC	4 cut(s)	92, 1240, 2251, 2393
HapII	CCGG	6 cut(s)	61, 102, 407, 423, 1141, 1501
HgaI	GACGC	1 cut(s)	1823
HhaI	GCGC	5 cut(s)	128, 251, 258, 524, 2152
Hin6I	GCGC	5 cut(s)	126, 249, 256, 522, 2150
HinP1I	GCGC	5 cut(s)	126, 249, 256, 522, 2150
HincII	GTYRAC	1 cut(s)	1120
HindII	GTYRAC	1 cut(s)	1120
HindIII	AAGCTT	1 cut(s)	1112
HpaII	CCGG	6 cut(s)	61, 102, 407, 423, 1141, 1501
HphI	GGTGA	4 cut(s)	596, 1442, 2156, 2278
Hpy166II	GTNNAC	3 cut(s)	325, 1102, 1120
Hpy8I	GTNNAC	3 cut(s)	325, 1102, 1120
Hpy99I	CGWCG	9 cut(s)	206, 218, 284, 287, 290, 293, 296, 299, 317
HpyCH4III	ACNGT	9 cut(s)	398, 1082, 1612, 1654, 1660, 2060, 2093, 2104, 2232
HpyCH4IV	ACGT	2 cut(s)	297, 966
HpyF10VI	GCNNNNNNNGC	7 cut(s)	255, 1232, 1280, 1400, 1524, 2248, 2445
HpySE526I	ACGT	2 cut(s)	297, 966
HspAI	GCGC	5 cut(s)	126, 249, 256, 522, 2150
Kzo9I	GATC	9 cut(s)	373, 663, 1357, 1684, 1783, 1859, 1951, 1964, 2479
LguI	GCTCTTC	1 cut(s)	943
LmnI	GCTCC	7 cut(s)	27, 110, 117, 724, 1231, 1252, 1288
Lsp1109I	GCAGC	5 cut(s)	94, 566, 1618, 2432, 2795
LweI	GCATC	2 cut(s)	856, 1390
MaeI	CTAG	5 cut(s)	146, 1130, 2414, 2442, 2555
MaeII	ACGT	2 cut(s)	297, 966
MaeIII	GTNAC	3 cut(s)	1654, 2618, 2684
MalI	GATC	9 cut(s)	375, 665, 1359, 1686, 1785, 1861, 1953, 1966, 2481
MboI	GATC	9 cut(s)	373, 663, 1357, 1684, 1783, 1859, 1951, 1964, 2479
MfeI	CAATTG	1 cut(s)	1920
MflI	RGATCY	5 cut(s)	1357, 1684, 1783, 1964, 2479
MhlI	GDGCHC	2 cut(s)	1104, 1228
MlsI	TGGCCA	1 cut(s)	92
MluNI	TGGCCA	1 cut(s)	92
MlyI	GAGTC	5 cut(s)	3, 413, 452, 2066, 2446
MmeI	TCCRAC	4 cut(s)	80, 327, 857, 2136
Mox20I	TGGCCA	1 cut(s)	92
Mph1103I	ATGCAT	1 cut(s)	1486
MroXI	GAANNNNTTC	1 cut(s)	2522
MscI	TGGCCA	1 cut(s)	92
MslI	CAYNNNNRTG	2 cut(s)	852, 2667
Msp20I	TGGCCA	1 cut(s)	92
MspA1I	CMGCKG	1 cut(s)	2215
MspCI	CTTAAG	1 cut(s)	1699
MspI	CCGG	6 cut(s)	61, 102, 407, 423, 1141, 1501
MspR9I	CCNGG	8 cut(s)	61, 637, 813, 839, 997, 1230, 1319, 1490
MunI	CAATTG	1 cut(s)	1920
MvaI	CCWGG	7 cut(s)	637, 813, 839, 997, 1230, 1319, 1490
MvnI	CGCG	4 cut(s)	126, 249, 486, 522
MwoI	GCNNNNNNNGC	7 cut(s)	255, 1232, 1280, 1400, 1524, 2248, 2445
NciI	CCSGG	1 cut(s)	61
NcoI	CCATGG	1 cut(s)	171
NdeI	CATATG	1 cut(s)	2788
NdeII	GATC	9 cut(s)	373, 663, 1357, 1684, 1783, 1859, 1951, 1964, 2479
NlaIV	GGNNCC	7 cut(s)	106, 501, 518, 726, 1227, 1248, 1785
NmeAIII	GCCGAG	1 cut(s)	2437
NmuCI	GTSAC	1 cut(s)	2684
NruI	TCGCGA	1 cut(s)	486
NsiI	ATGCAT	1 cut(s)	1486
NspI	RCATGY	3 cut(s)	2313, 2431, 2644
OliI	CACNNNNGTG	1 cut(s)	2667
PagI	TCATGA	1 cut(s)	777
PceI	AGGCCT	2 cut(s)	2251, 2393
PciI	ACATGT	2 cut(s)	2427, 2640
PciSI	GCTCTTC	1 cut(s)	943
PcsI	WCGNNNNNNNCGW	9 cut(s)	198, 210, 279, 285, 288, 291, 294, 300, 1768
PdmI	GAANNNNTTC	1 cut(s)	2522
PflMI	CCANNNNNTGG	2 cut(s)	1096, 1670
PfoI	TCCNGGA	2 cut(s)	811, 837
PinAI	ACCGGT	1 cut(s)	1500
PkrI	GCNGC	6 cut(s)	84, 521, 556, 1633, 2447, 2785
Ple19I	CGATCG	1 cut(s)	1862
PleI	GAGTC	5 cut(s)	3, 413, 452, 2066, 2446
PpsI	GAGTC	5 cut(s)	3, 413, 452, 2066, 2446
PpuMI	RGGWCCY	1 cut(s)	2417
PscI	ACATGT	2 cut(s)	2427, 2640
PshAI	GACNNNNGTC	1 cut(s)	2094
Psp5II	RGGWCCY	1 cut(s)	2417
Psp6I	CCWGG	7 cut(s)	635, 811, 837, 995, 1228, 1317, 1488
PspFI	CCCAGC	2 cut(s)	219, 252
PspGI	CCWGG	7 cut(s)	635, 811, 837, 995, 1228, 1317, 1488
PspN4I	GGNNCC	7 cut(s)	106, 501, 518, 726, 1227, 1248, 1785
PspPI	GGNCC	3 cut(s)	360, 499, 2417
PspPPI	RGGWCCY	1 cut(s)	2417
PsrI	GAACNNNNNNTAC	4 cut(s)	947, 979, 1696, 1728
PsuI	RGATCY	5 cut(s)	1357, 1684, 1783, 1964, 2479
PvuI	CGATCG	1 cut(s)	1862
PvuII	CAGCTG	1 cut(s)	2215
RgaI	GCGATCGC	1 cut(s)	1862
RruI	TCGCGA	1 cut(s)	486
RsaI	GTAC	8 cut(s)	50, 395, 400, 1642, 2378, 2648, 2726, 2811
RsaNI	GTAC	8 cut(s)	49, 394, 399, 1641, 2377, 2647, 2725, 2810
RseI	CAYNNNNRTG	2 cut(s)	852, 2667
Rsr2I	CGGWCCG	1 cut(s)	360
RsrII	CGGWCCG	1 cut(s)	360
SapI	GCTCTTC	1 cut(s)	943
SatI	GCNGC	6 cut(s)	83, 520, 555, 1632, 2446, 2784
Sau3AI	GATC	9 cut(s)	373, 663, 1357, 1684, 1783, 1859, 1951, 1964, 2479
Sau96I	GGNCC	3 cut(s)	360, 499, 2417
ScaI	AGTACT	1 cut(s)	400
SchI	GAGTC	5 cut(s)	3, 413, 452, 2066, 2446
ScrFI	CCNGG	8 cut(s)	61, 637, 813, 839, 997, 1230, 1319, 1490
SduI	GDGCHC	2 cut(s)	1104, 1228
SfaAI	GCGATCGC	1 cut(s)	1862
SfaNI	GCATC	2 cut(s)	856, 1390
SfcI	CTRYAG	2 cut(s)	337, 2100
SgfI	GCGATCGC	1 cut(s)	1862
SinI	GGWCC	3 cut(s)	360, 499, 2417
SmiI	ATTTAAAT	1 cut(s)	1998
SmiMI	CAYNNNNRTG	2 cut(s)	852, 2667
SmlI	CTYRAG	3 cut(s)	985, 1699, 2387
SmoI	CTYRAG	3 cut(s)	985, 1699, 2387
SseBI	AGGCCT	2 cut(s)	2251, 2393
SsiI	CCGC	8 cut(s)	241, 247, 262, 520, 1430, 1444, 1594, 2614
SspI	AATATT	2 cut(s)	1439, 1972
SspMI	CTAG	5 cut(s)	146, 1130, 2414, 2442, 2555
StuI	AGGCCT	2 cut(s)	2251, 2393
StyD4I	CCNGG	8 cut(s)	59, 635, 811, 837, 995, 1228, 1317, 1488
StyI	CCWWGG	3 cut(s)	171, 495, 2246
SwaI	ATTTAAAT	1 cut(s)	1998
TaaI	ACNGT	9 cut(s)	398, 1082, 1612, 1654, 1660, 2060, 2093, 2104, 2232
TaiI	ACGT	2 cut(s)	300, 969
TaqI	TCGA	3 cut(s)	228, 315, 2635
TaqII	GACCGA	1 cut(s)	377
TatI	WGTACW	4 cut(s)	48, 393, 398, 2376
TauI	GCSGC	1 cut(s)	522
TscAI	CASTG	6 cut(s)	1087, 1248, 1300, 1575, 1665, 1763
TseFI	GTSAC	1 cut(s)	2684
TseI	GCWGC	5 cut(s)	82, 554, 1631, 2445, 2783
Tsp45I	GTSAC	1 cut(s)	2684
TspGWI	ACGGA	1 cut(s)	14
TspRI	CASTG	6 cut(s)	1087, 1248, 1300, 1575, 1665, 1763
Van91I	CCANNNNNTGG	2 cut(s)	1096, 1670
Vha464I	CTTAAG	1 cut(s)	1699
VneI	GTGCAC	1 cut(s)	1100
VpaK11BI	GGWCC	3 cut(s)	360, 499, 2417
XapI	RAATTY	3 cut(s)	646, 1982, 2171
XceI	RCATGY	3 cut(s)	2313, 2431, 2644
XcmI	CCANNNNNNNNNTGG	2 cut(s)	741, 2584
XmiI	GTMKAC	1 cut(s)	324
XmnI	GAANNNNTTC	1 cut(s)	2522
XspI	CTAG	5 cut(s)	146, 1130, 2414, 2442, 2555
ZrmI	AGTACT	1 cut(s)	400
Zsp2I	ATGCAT	1 cut(s)	1486

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.