Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0006941

Physical Location & Seq

Genomic Coordinates Reverse (-)

27596583 .. 27605044

Gene Structure 8462 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00405190.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2505 bp

ATGACCCGACTCTCGGAGAAGCTCCGTCTGTCTCTCTTCCTTCTTCTGTACAATCCAACCCGGTTTCTCTCTCCTCCTAAGCAGCTCTTGGCCACTCTCTCCGTCTCCACGCTCCACTTCTGCAAGTCCCGAGCACGCGCCCTCGCCTCCAAAACCCTAGCCCTCTTCTTCTTCTTCTTCTTCGCCATGGACGACCCCTTCCCCTTCGCACCTGCCGACGGCGACAACGACGGCTGGGACTTCGACCTCCAGTCCCGCAACCGCGCCCAGCGCCCCCGCCTCCTCCACGACTACGACGACGACGACGACGTTTCCGACAATGCCGTCGATAAGGTCTACCTCGTTCCCTACAGGTGGTGGAAGGAGGTTCGGACTGAAGACGATGATCGTGGCGAAGGGGTGTTGTACAGCACTTCGCCGGAGGAAGACGACTCCGGCTCGGAAATTGTGTTGAATTTGAGGAAGAGGGACTCTGCTGAAGAAGGGTTTTCAGGTCGCGAGTATGCCTTGGTCCCTGAAGCGACATGGTGCCGCGCACTCATACGGCATTATGATTTTAATACAGCAGCAATGGATAATGTGAGCTTCTTTGGTGACGAAGAGTTTTTAAAGGATGTCTTTTCTTTACAAATTAGGCTCTTTGTTTCCTGGGAAACAAATTCATTGGTTGTAAAGATCAGCCAAAAGTTGCATATTTGGGACTTCTCAGGGCAGACAACCCAATTTTTCATGAATGATAGAATTAGTTTGCCAAATGACATTCCTGGACAACTGAACAAAGAGATGAATAACACTTATGTGTATGAGGTCTTCCATATAGAGGGAAGGATGAATGAAGAAGAAAACCAACTTTTACATTTGGGAGAGCTTGCTTTTGCATTTGGAGAATTATTGAGGAGATTATGGGCTCCAGGTGCAAGGCCAGTGGCTCCAAGAATGTTCAAGCAAAAACTTGCCAGTTTTGCTCCTCAATTCAGTGGCTATAATCAACATGATTCCCAGGAACTCCTTGCTTTTTTGCTGGATGGTCTGCATGAAGATCTAAATCGTGTGAAATGCAAGCCATATTTTGAAGCTAAAGATGCAGAGGGTCGTCCAGATGAAGAAGTGGCAGAAGAATATTGGCGGAATCACCTTGCTCGCAATGATTCCATTATTGTTAATGCATACCAGGGTCAATACCGGTCAAAATTGGTTTGCCCCGATTGCAACAAGGTGTCCATTACATTTGATCCCTTTATGTATCTATCACTGCCATTACCTTCTACAACAATGCGGAGTATGACTTTGACGGTTTTAAGCACAGATGGTGCTGCATTGCCTACTACATTTACTGTAACAGTGCCAAAGAGTGGGAAGCTCGTGGATCTTACTGAAGCCTTAAGTATTGCCTGTTCTCTAAGAGATGATGAAACCCTGTTGGTGGCTGAGATATACCAGTGTCGCATATTTCGTCTATTGGAGGATCCATCTGATTCATTAGCCTTTGTTAGAGACGCTGACAAACTGGTTGCTTATCGCTTACCAAAAGATTTTGAGCGATCGCACTTGGTTGTGTTTCTTCATCAGGAGAAGGGAAAGTATTACTATAATCAAGACACAATTGGTATCCCACTTTTAGCAAGGGTGTCTGATCCTTGTTATGGATCTGATATTCGCAACGAATTCCTAAATAATTTAAATCCATTCTTGAAGCCTGATGGAGATATATTAGATGTTTTTGATGATGATTCTGGAAACTGTGCTAATGAAGACTCTAACAAGGAGGATGACAGTAGTCCTACAGTTTGGGATAATGATTCTGACACAGACAGGGGAACAATGGGTGAAGCGCTGTTGGATACTGACTTCAAATTTTACTTAGCAGATACAAGAAAGGAAATAGAGTTGAATCAGCTGATAGAGGTCTCACGGTTGCCTGTGGTACCAAGGCCTAAGATACTGGAGGTGATTGTTTTATGGACAGATGAGATGATTAACAAGTATGATACACGCCTTCTAAACTCTTTGCCTGAGGTTTTCAACATTTTCACGAGTAGTGAAGAATCTGTTTCCCTGTACAATTGCCTTGAGGCCTTTCTGAAGGAAGAACCTCTAGGACCTGAAGACATGTGGTTCTGCCCCAGCTGCAAGACTCCTCGGCAAGCCAGCAAAAAGTTAGATCTTTGGAGATTGCCTGAGATATTGGTTATTCATCTGAAAAGATTCTCGTATGACCATTATTTTAAGAACAAGCTAGAAACATTAGTTGATTTTCCCATTTATGATATGGACATCTCAACATACATTACCCACCGCAGTAACCAGTTATCCAGTCGATACATGTTGTACGCAATCAGTAATCACTATGGTGGCTTGGGTGGTGGTCACTATACGGCATTTGTTCATCTCGGTAAGGGTTCATGGTATGAGTTTGATGATGACAGGGTTTCTGCTGTTAATGAGGAGAGGATTAAGACTTCCGCAGCATATGTTCTTTTCTACCGAAGAGTACCAGATGTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04137 map04137

Pfam Domains

Protein Families

UCH

Protein Analysis

834

Amino Acids

96.21

Weight (kDa)

4.86

Isoelectric Point (pI)

45.46

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ubiquitin_UBP8	PF25242	227 - 245	5.7e-06	UBP8-like, ubiquitin-like domain
UCH	PF00443	276 - 828	7.8e-59	Ubiquitin carboxyl-terminal hydrolase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006941)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g20680 FvH4_6g20680 FvH4_6g20680
malus_domestica	MD00G1072700.v1.1 MD12G1043100.v1.1 MD14G1042200.v1.1
prunus_persica	Prupe.7G091700_v2.0.a1 Prupe.7G091700_v2.0.a1 Prupe.7G091700_v2.0.a1 Prupe.7G091700_v2.0.a1
pyrus_communis	pycom12g03720 pycom14g03580
rosa_chinensis	RchiOBHm_Chr3g0476581
rosa_laevigata	RLG00000001984 RLG00000023761
rosa_multiflora	Rmu_sc0008241.1_g000007 Rmu_sc0020945.1_g000001
rosa_roxburghii	Rroxscaffold_6G00405190
rosa_rugosa	Rorug03G0155400
rosa_samantha	Rh3AG206000 Rh3BG238600 Rh3CG232300 Rh3DG232200 Rh7DG310400
rosa_wichuraiana	Rw3G018760 Rw7G026340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	220
AasI	GACNNNNNNGTC	1 cut(s)	323
Acc36I	ACCTGC	1 cut(s)	220
Acc65I	GGTACC	1 cut(s)	1924
AccB1I	GGYRCC	2 cut(s)	528, 1924
AccB7I	CCANNNNNTGG	1 cut(s)	1352
AccI	GTMKAC	1 cut(s)	336
AccII	CGCG	4 cut(s)	138, 264, 498, 534
AciI	CCGC	8 cut(s)	256, 262, 277, 532, 1126, 1276, 2296, 2463
AclWI	GGATC	6 cut(s)	1226, 1374, 1460, 1473, 1628, 1654
AcoI	YGGCCR	1 cut(s)	90
AcsI	RAATTY	4 cut(s)	454, 658, 1664, 1853
AcuI	CTGAAG	6 cut(s)	396, 498, 537, 1395, 2102, 2124
AfaI	GTAC	6 cut(s)	50, 407, 1926, 2060, 2330, 2493
AfeI	AGCGCT	1 cut(s)	1833
AfiI	CCNNNNNNNGG	7 cut(s)	13, 218, 354, 820, 1352, 1423, 1643
AflII	CTTAAG	1 cut(s)	1381
AflIII	ACRYGT	2 cut(s)	2109, 2322
AgeI	ACCGGT	1 cut(s)	1182
AgsI	TTSAA	7 cut(s)	454, 943, 1073, 1693, 1852, 1891, 2023
AhdI	GACNNNNNGTC	1 cut(s)	250
AjnI	CCWGG	5 cut(s)	647, 763, 910, 999, 1170
AleI	CACNNNNGTG	2 cut(s)	797, 2349
AluBI	AGCT	9 cut(s)	22, 85, 585, 868, 1076, 1360, 1897, 2127, 2236
AluI	AGCT	9 cut(s)	22, 85, 585, 868, 1076, 1360, 1897, 2127, 2236
Alw21I	GWGCWC	1 cut(s)	136
Alw26I	GTCTC	4 cut(s)	36, 109, 1488, 1912
AlwI	GGATC	6 cut(s)	1226, 1374, 1460, 1473, 1628, 1654
Ama87I	CYCGRG	1 cut(s)	129
Aor51HI	AGCGCT	1 cut(s)	1833
AoxI	GGCC	4 cut(s)	90, 920, 1931, 2073
ApeKI	GCWGC	5 cut(s)	82, 566, 1313, 2127, 2465
ApoI	RAATTY	4 cut(s)	454, 658, 1664, 1853
AsiGI	ACCGGT	1 cut(s)	1182
AsiSI	GCGATCGC	1 cut(s)	1544
Asp700I	GAANNNNTTC	1 cut(s)	2204
Asp718I	GGTACC	1 cut(s)	1924
AspLEI	GCGC	5 cut(s)	140, 266, 273, 536, 1834
AspS9I	GGNCC	2 cut(s)	511, 2099
AsuC2I	CCSGG	1 cut(s)	61
AsuHPI	GGTGA	4 cut(s)	605, 1124, 1838, 1960
AvaI	CYCGRG	1 cut(s)	129
AvaII	GGWCC	2 cut(s)	511, 2099
AxyI	CCTNAGG	1 cut(s)	2013
BalI	TGGCCA	1 cut(s)	92
BamHI	GGATCC	1 cut(s)	1465
BanI	GGYRCC	2 cut(s)	528, 1924
BanII	GRGCYC	1 cut(s)	910
BarI	GAAGNNNNNNTAC	2 cut(s)	794, 826
BauI	CACGAG	2 cut(s)	1361, 2032
BbsI	GAAGAC	5 cut(s)	384, 432, 802, 1758, 2112
Bbv12I	GWGCWC	1 cut(s)	136
BbvI	GCAGC	5 cut(s)	94, 578, 1300, 2114, 2477
BccI	CCATC	4 cut(s)	1019, 1301, 1477, 1694
BceAI	ACGGC	5 cut(s)	235, 247, 308, 560, 2391
BciT130I	CCWGG	5 cut(s)	649, 765, 912, 1001, 1172
BciVI	GTATCC	2 cut(s)	1619, 1834
BcnI	CCSGG	1 cut(s)	61
BcoDI	GTCTC	4 cut(s)	36, 109, 1488, 1912
BfaI	CTAG	3 cut(s)	158, 2096, 2237
BfmI	CTRYAG	2 cut(s)	349, 1782
BfoI	RGCGCY	2 cut(s)	274, 1835
BfrI	CTTAAG	1 cut(s)	1381
BfuAI	ACCTGC	1 cut(s)	220
BfuI	GTATCC	2 cut(s)	1619, 1834
BglII	AGATCT	2 cut(s)	1039, 2161
BisI	GCNGC	6 cut(s)	83, 532, 567, 1314, 2128, 2466
BlsI	GCNGC	6 cut(s)	84, 533, 568, 1315, 2129, 2467
Bme1390I	CCNGG	6 cut(s)	61, 649, 765, 912, 1001, 1172
Bme18I	GGWCC	2 cut(s)	511, 2099
BmeRI	GACNNNNNGTC	1 cut(s)	250
BmeT110I	CYCGRG	1 cut(s)	129
BmgT120I	GGNCC	2 cut(s)	511, 2099
BmiI	GGNNCC	6 cut(s)	513, 530, 909, 930, 1467, 1926
BmrFI	CCNGG	6 cut(s)	61, 649, 765, 912, 1001, 1172
BmsI	GCATC	1 cut(s)	1072
BoxI	GACNNNNGTC	1 cut(s)	1776
BpiI	GAAGAC	5 cut(s)	384, 432, 802, 1758, 2112
BpmI	CTGGAG	3 cut(s)	233, 894, 1964
Bpu10I	CCTNAGC	1 cut(s)	78
BpuEI	CTTGAG	1 cut(s)	2090
BpuMI	CCSGG	1 cut(s)	61
BsaBI	GATNNNNATC	1 cut(s)	1044
BsaI	GGTCTC	1 cut(s)	1912
BsaJI	CCNNGG	7 cut(s)	186, 507, 648, 999, 1171, 1928, 2138
BsaWI	WCCGGW	1 cut(s)	1182
Bsc4I	CCNNNNNNNGG	7 cut(s)	13, 218, 354, 820, 1352, 1423, 1643
Bse118I	RCCGGY	1 cut(s)	1182
Bse1I	ACTGG	8 cut(s)	250, 923, 957, 1438, 1512, 1947, 2305, 2313
Bse21I	CCTNAGG	1 cut(s)	2013
Bse3DI	GCAATG	3 cut(s)	576, 1150, 1316
Bse8I	GATNNNNATC	1 cut(s)	1044
BseBI	CCWGG	5 cut(s)	649, 765, 912, 1001, 1172
BseDI	CCNNGG	7 cut(s)	186, 507, 648, 999, 1171, 1928, 2138
BseGI	GGATG	4 cut(s)	619, 834, 1030, 1774
BseJI	GATNNNNATC	1 cut(s)	1044
BseLI	CCNNNNNNNGG	7 cut(s)	13, 218, 354, 820, 1352, 1423, 1643
BseMI	GCAATG	3 cut(s)	576, 1150, 1316
BseMII	CTCAG	4 cut(s)	720, 1419, 2004, 2169
BseNI	ACTGG	8 cut(s)	250, 923, 957, 1438, 1512, 1947, 2305, 2313
BseRI	GAGGAG	6 cut(s)	63, 272, 910, 957, 2127, 2459
BseXI	GCAGC	5 cut(s)	94, 578, 1300, 2114, 2477
BseYI	CCCAGC	3 cut(s)	234, 267, 2123
Bsh1236I	CGCG	4 cut(s)	138, 264, 498, 534
Bsh1285I	CGRYCG	1 cut(s)	1544
BshFI	GGCC	4 cut(s)	92, 922, 1933, 2075
BshNI	GGYRCC	2 cut(s)	528, 1924
BshTI	ACCGGT	1 cut(s)	1182
BsiEI	CGRYCG	1 cut(s)	1544
BsiHKAI	GWGCWC	1 cut(s)	136
BsiHKCI	CYCGRG	1 cut(s)	129
BsiSI	CCGG	4 cut(s)	61, 419, 435, 1183
BslFI	GGGAC	6 cut(s)	112, 238, 251, 482, 497, 713
BslI	CCNNNNNNNGG	7 cut(s)	13, 218, 354, 820, 1352, 1423, 1643
BsmAI	GTCTC	4 cut(s)	36, 109, 1488, 1912
BsmBI	CGTCTC	2 cut(s)	109, 1488
BsmFI	GGGAC	6 cut(s)	112, 238, 251, 482, 497, 713
BsnI	GGCC	4 cut(s)	92, 922, 1933, 2075
Bso31I	GGTCTC	1 cut(s)	1912
BsoBI	CYCGRG	1 cut(s)	129
Bsp1286I	GDGCHC	2 cut(s)	136, 910
Bsp1407I	TGTACA	3 cut(s)	48, 405, 2058
Bsp19I	CCATGG	1 cut(s)	186
Bsp68I	TCGCGA	1 cut(s)	498
BspACI	CCGC	8 cut(s)	256, 262, 277, 532, 1126, 1276, 2296, 2463
BspANI	GGCC	4 cut(s)	92, 922, 1933, 2075
BspCNI	CTCAG	4 cut(s)	719, 1420, 2005, 2170
BspFNI	CGCG	4 cut(s)	138, 264, 498, 534
BspHI	TCATGA	1 cut(s)	729
BspLI	GGNNCC	6 cut(s)	513, 530, 909, 930, 1467, 1926
BspMI	ACCTGC	1 cut(s)	220
BspPI	GGATC	6 cut(s)	1226, 1374, 1460, 1473, 1628, 1654
BspT107I	GGYRCC	2 cut(s)	528, 1924
BspTI	CTTAAG	1 cut(s)	1381
BspTNI	GGTCTC	1 cut(s)	1912
BsrDI	GCAATG	3 cut(s)	576, 1150, 1316
BsrFI	RCCGGY	1 cut(s)	1182
BsrGI	TGTACA	3 cut(s)	48, 405, 2058
BsrI	ACTGG	8 cut(s)	250, 923, 957, 1438, 1512, 1947, 2305, 2313
BssAI	RCCGGY	1 cut(s)	1182
BssECI	CCNNGG	7 cut(s)	186, 507, 648, 999, 1171, 1928, 2138
BssSI	CACGAG	2 cut(s)	1361, 2032
BssT1I	CCWWGG	3 cut(s)	186, 507, 1928
Bst2BI	CACGAG	2 cut(s)	1361, 2032
Bst2UI	CCWGG	5 cut(s)	649, 765, 912, 1001, 1172
Bst4CI	ACNGT	7 cut(s)	1294, 1336, 1342, 1742, 1775, 1786, 1914
Bst6I	CTCTTC	5 cut(s)	41, 170, 458, 594, 2482
BstAFI	CTTAAG	1 cut(s)	1381
BstAUI	TGTACA	3 cut(s)	48, 405, 2058
BstC8I	GCNNGC	6 cut(s)	136, 870, 1061, 1141, 2145, 2149
BstDEI	CTNAG	8 cut(s)	78, 706, 1400, 1428, 1861, 1935, 2013, 2178
BstDSI	CCRYGG	1 cut(s)	186
BstF5I	GGATG	4 cut(s)	619, 834, 1030, 1774
BstFNI	CGCG	4 cut(s)	138, 264, 498, 534
BstH2I	RGCGCY	2 cut(s)	274, 1835
BstHHI	GCGC	5 cut(s)	140, 266, 273, 536, 1834
BstMAI	GTCTC	4 cut(s)	36, 109, 1488, 1912
BstMCI	CGRYCG	1 cut(s)	1544
BstMWI	GCNNNNNNNGC	6 cut(s)	270, 914, 962, 1082, 1206, 2127
BstNI	CCWGG	5 cut(s)	649, 765, 912, 1001, 1172
BstNSI	RCATGY	2 cut(s)	2113, 2326
BstPAI	GACNNNNGTC	1 cut(s)	1776
BstSCI	CCNGG	6 cut(s)	59, 647, 763, 910, 999, 1170
BstSFI	CTRYAG	2 cut(s)	349, 1782
BstUI	CGCG	4 cut(s)	138, 264, 498, 534
BstV1I	GCAGC	5 cut(s)	94, 578, 1300, 2114, 2477
BstV2I	GAAGAC	5 cut(s)	384, 432, 802, 1758, 2112
BstX2I	RGATCY	5 cut(s)	1039, 1366, 1465, 1646, 2161
BstYI	RGATCY	5 cut(s)	1039, 1366, 1465, 1646, 2161
Bsu36I	CCTNAGG	1 cut(s)	2013
BsuI	GTATCC	2 cut(s)	1619, 1834
BsuRI	GGCC	4 cut(s)	92, 922, 1933, 2075
BtgI	CCRYGG	1 cut(s)	186
BtsCI	GGATG	4 cut(s)	619, 834, 1030, 1774
BtsI	GCAGTG	1 cut(s)	1250
BtsIMutI	CAGTG	5 cut(s)	930, 982, 1250, 1347, 1445
BtuMI	TCGCGA	1 cut(s)	498
BveI	ACCTGC	1 cut(s)	220
Cac8I	GCNNGC	6 cut(s)	136, 870, 1061, 1141, 2145, 2149
CciI	TCATGA	1 cut(s)	729
CfoI	GCGC	5 cut(s)	140, 266, 273, 536, 1834
Cfr10I	RCCGGY	1 cut(s)	1182
Cfr13I	GGNCC	2 cut(s)	511, 2099
CseI	GACGC	1 cut(s)	1505
Csp6I	GTAC	6 cut(s)	49, 406, 1925, 2059, 2329, 2492
CspAI	ACCGGT	1 cut(s)	1182
CspCI	CAANNNNNGTGG	2 cut(s)	906, 941
CviAII	CATG	8 cut(s)	187, 525, 730, 992, 1034, 2110, 2323, 2403
CviQI	GTAC	6 cut(s)	49, 406, 1925, 2059, 2329, 2492
DdeI	CTNAG	8 cut(s)	78, 706, 1400, 1428, 1861, 1935, 2013, 2178
DraI	TTTAAA	2 cut(s)	609, 1680
DrdI	GACNNNNNNGTC	1 cut(s)	323
DriI	GACNNNNNGTC	1 cut(s)	250
DseDI	GACNNNNNNGTC	1 cut(s)	323
EaeI	YGGCCR	1 cut(s)	90
Eam1104I	CTCTTC	5 cut(s)	41, 170, 458, 594, 2482
Eam1105I	GACNNNNNGTC	1 cut(s)	250
EarI	CTCTTC	5 cut(s)	41, 170, 458, 594, 2482
EciI	GGCGGA	1 cut(s)	1141
Eco130I	CCWWGG	3 cut(s)	186, 507, 1928
Eco147I	AGGCCT	2 cut(s)	1933, 2075
Eco24I	GRGCYC	1 cut(s)	910
Eco31I	GGTCTC	1 cut(s)	1912
Eco47I	GGWCC	2 cut(s)	511, 2099
Eco47III	AGCGCT	1 cut(s)	1833
Eco57I	CTGAAG	6 cut(s)	396, 498, 537, 1395, 2102, 2124
Eco81I	CCTNAGG	1 cut(s)	2013
Eco88I	CYCGRG	1 cut(s)	129
EcoO109I	RGGNCCY	1 cut(s)	2099
EcoRI	GAATTC	1 cut(s)	1664
EcoRII	CCWGG	5 cut(s)	647, 763, 910, 999, 1170
EcoT14I	CCWWGG	3 cut(s)	186, 507, 1928
EcoT22I	ATGCAT	1 cut(s)	1168
EcoT38I	GRGCYC	1 cut(s)	910
ErhI	CCWWGG	3 cut(s)	186, 507, 1928
Esp3I	CGTCTC	2 cut(s)	109, 1488
FaeI	CATG	8 cut(s)	190, 528, 733, 995, 1037, 2113, 2326, 2406
FalI	AAGNNNNNCTT	4 cut(s)	71, 103, 602, 634
FaqI	GGGAC	6 cut(s)	112, 238, 251, 482, 497, 713
FatI	CATG	8 cut(s)	186, 524, 729, 991, 1033, 2109, 2322, 2402
FauI	CCCGC	2 cut(s)	263, 284
FauNDI	CATATG	1 cut(s)	2470
FblI	GTMKAC	1 cut(s)	336
Fnu4HI	GCNGC	6 cut(s)	83, 532, 567, 1314, 2128, 2466
FokI	GGATG	4 cut(s)	626, 841, 1037, 1781
FriOI	GRGCYC	1 cut(s)	910
Fsp4HI	GCNGC	6 cut(s)	83, 532, 567, 1314, 2128, 2466
FspBI	CTAG	3 cut(s)	158, 2096, 2237
GlaI	GCGC	5 cut(s)	139, 265, 272, 535, 1833
GluI	GCNGC	6 cut(s)	83, 532, 567, 1314, 2128, 2466
GsaI	CCCAGC	3 cut(s)	238, 271, 2127
GsuI	CTGGAG	3 cut(s)	233, 894, 1964
HaeII	RGCGCY	2 cut(s)	274, 1835
HaeIII	GGCC	4 cut(s)	92, 922, 1933, 2075
HapII	CCGG	4 cut(s)	61, 419, 435, 1183
HgaI	GACGC	1 cut(s)	1505
HhaI	GCGC	5 cut(s)	140, 266, 273, 536, 1834
Hin1II	CATG	8 cut(s)	190, 528, 733, 995, 1037, 2113, 2326, 2406
Hin6I	GCGC	5 cut(s)	138, 264, 271, 534, 1832
HinP1I	GCGC	5 cut(s)	138, 264, 271, 534, 1832
HpaII	CCGG	4 cut(s)	61, 419, 435, 1183
HphI	GGTGA	4 cut(s)	605, 1124, 1838, 1960
Hpy166II	GTNNAC	1 cut(s)	337
Hpy188III	TCNNGA	9 cut(s)	129, 497, 730, 1097, 1568, 1595, 1690, 1734, 2032
Hpy8I	GTNNAC	1 cut(s)	337
Hpy99I	CGWCG	8 cut(s)	221, 233, 299, 302, 305, 308, 311, 329
HpyCH4III	ACNGT	7 cut(s)	1294, 1336, 1342, 1742, 1775, 1786, 1914
HpyCH4IV	ACGT	1 cut(s)	309
HpyF10VI	GCNNNNNNNGC	6 cut(s)	270, 914, 962, 1082, 1206, 2127
HpyF3I	CTNAG	8 cut(s)	78, 706, 1400, 1428, 1861, 1935, 2013, 2178
HpySE526I	ACGT	1 cut(s)	309
Hsp92II	CATG	8 cut(s)	190, 528, 733, 995, 1037, 2113, 2326, 2406
HspAI	GCGC	5 cut(s)	138, 264, 271, 534, 1832
KpnI	GGTACC	1 cut(s)	1928
LmnI	GCTCC	5 cut(s)	27, 117, 913, 934, 970
Lsp1109I	GCAGC	5 cut(s)	94, 578, 1300, 2114, 2477
LweI	GCATC	1 cut(s)	1072
MaeI	CTAG	3 cut(s)	158, 2096, 2237
MaeII	ACGT	1 cut(s)	309
MaeIII	GTNAC	4 cut(s)	593, 1336, 2300, 2366
MfeI	CAATTG	2 cut(s)	1602, 2062
MflI	RGATCY	5 cut(s)	1039, 1366, 1465, 1646, 2161
MhlI	GDGCHC	2 cut(s)	136, 910
MlsI	TGGCCA	1 cut(s)	92
MluNI	TGGCCA	1 cut(s)	92
MlyI	GAGTC	5 cut(s)	3, 425, 464, 1748, 2128
MmeI	TCCRAC	3 cut(s)	80, 339, 1818
Mox20I	TGGCCA	1 cut(s)	92
Mph1103I	ATGCAT	1 cut(s)	1168
MroXI	GAANNNNTTC	1 cut(s)	2204
MscI	TGGCCA	1 cut(s)	92
MslI	CAYNNNNRTG	2 cut(s)	797, 2349
Msp20I	TGGCCA	1 cut(s)	92
MspA1I	CMGCKG	2 cut(s)	1897, 2127
MspCI	CTTAAG	1 cut(s)	1381
MspI	CCGG	4 cut(s)	61, 419, 435, 1183
MspR9I	CCNGG	6 cut(s)	61, 649, 765, 912, 1001, 1172
MunI	CAATTG	2 cut(s)	1602, 2062
MvaI	CCWGG	5 cut(s)	649, 765, 912, 1001, 1172
MvnI	CGCG	4 cut(s)	138, 264, 498, 534
MwoI	GCNNNNNNNGC	6 cut(s)	270, 914, 962, 1082, 1206, 2127
NciI	CCSGG	1 cut(s)	61
NcoI	CCATGG	1 cut(s)	186
NdeI	CATATG	1 cut(s)	2470
NlaIII	CATG	8 cut(s)	190, 528, 733, 995, 1037, 2113, 2326, 2406
NlaIV	GGNNCC	6 cut(s)	513, 530, 909, 930, 1467, 1926
NmeAIII	GCCGAG	1 cut(s)	2119
NmuCI	GTSAC	2 cut(s)	593, 2366
NruI	TCGCGA	1 cut(s)	498
NsiI	ATGCAT	1 cut(s)	1168
NspI	RCATGY	2 cut(s)	2113, 2326
OliI	CACNNNNGTG	2 cut(s)	797, 2349
PagI	TCATGA	1 cut(s)	729
PaqCI	CACCTGC	1 cut(s)	220
PceI	AGGCCT	2 cut(s)	1933, 2075
PciI	ACATGT	2 cut(s)	2109, 2322
PcsI	WCGNNNNNNNCGW	9 cut(s)	189, 213, 225, 294, 300, 303, 306, 312, 1450
PdmI	GAANNNNTTC	1 cut(s)	2204
PfeI	GAWTC	9 cut(s)	995, 1129, 1148, 1475, 1730, 1799, 1891, 2045, 2205
PflMI	CCANNNNNTGG	1 cut(s)	1352
PfoI	TCCNGGA	1 cut(s)	763
PinAI	ACCGGT	1 cut(s)	1182
PkrI	GCNGC	6 cut(s)	84, 533, 568, 1315, 2129, 2467
Ple19I	CGATCG	1 cut(s)	1544
PleI	GAGTC	5 cut(s)	3, 425, 464, 1748, 2128
PpsI	GAGTC	5 cut(s)	3, 425, 464, 1748, 2128
PpuMI	RGGWCCY	1 cut(s)	2099
PscI	ACATGT	2 cut(s)	2109, 2322
PshAI	GACNNNNGTC	1 cut(s)	1776
Psp5II	RGGWCCY	1 cut(s)	2099
Psp6I	CCWGG	5 cut(s)	647, 763, 910, 999, 1170
PspFI	CCCAGC	3 cut(s)	234, 267, 2123
PspGI	CCWGG	5 cut(s)	647, 763, 910, 999, 1170
PspN4I	GGNNCC	6 cut(s)	513, 530, 909, 930, 1467, 1926
PspPI	GGNCC	2 cut(s)	511, 2099
PspPPI	RGGWCCY	1 cut(s)	2099
PsrI	GAACNNNNNNTAC	2 cut(s)	1378, 1410
PsuI	RGATCY	5 cut(s)	1039, 1366, 1465, 1646, 2161
PvuI	CGATCG	1 cut(s)	1544
PvuII	CAGCTG	2 cut(s)	1897, 2127
RgaI	GCGATCGC	1 cut(s)	1544
RruI	TCGCGA	1 cut(s)	498
RsaI	GTAC	6 cut(s)	50, 407, 1926, 2060, 2330, 2493
RsaNI	GTAC	6 cut(s)	49, 406, 1925, 2059, 2329, 2492
RseI	CAYNNNNRTG	2 cut(s)	797, 2349
SatI	GCNGC	6 cut(s)	83, 532, 567, 1314, 2128, 2466
Sau96I	GGNCC	2 cut(s)	511, 2099
SchI	GAGTC	5 cut(s)	3, 425, 464, 1748, 2128
ScrFI	CCNGG	6 cut(s)	61, 649, 765, 912, 1001, 1172
SduI	GDGCHC	2 cut(s)	136, 910
SfaAI	GCGATCGC	1 cut(s)	1544
SfaNI	GCATC	1 cut(s)	1072
SfcI	CTRYAG	2 cut(s)	349, 1782
SgfI	GCGATCGC	1 cut(s)	1544
SinI	GGWCC	2 cut(s)	511, 2099
SmiI	ATTTAAAT	1 cut(s)	1680
SmiMI	CAYNNNNRTG	2 cut(s)	797, 2349
SmlI	CTYRAG	2 cut(s)	1381, 2069
SmoI	CTYRAG	2 cut(s)	1381, 2069
SseBI	AGGCCT	2 cut(s)	1933, 2075
SsiI	CCGC	8 cut(s)	256, 262, 277, 532, 1126, 1276, 2296, 2463
SspI	AATATT	1 cut(s)	1121
SspMI	CTAG	3 cut(s)	158, 2096, 2237
StuI	AGGCCT	2 cut(s)	1933, 2075
StyD4I	CCNGG	6 cut(s)	59, 647, 763, 910, 999, 1170
StyI	CCWWGG	3 cut(s)	186, 507, 1928
SwaI	ATTTAAAT	1 cut(s)	1680
TaaI	ACNGT	7 cut(s)	1294, 1336, 1342, 1742, 1775, 1786, 1914
TaiI	ACGT	1 cut(s)	312
TaqI	TCGA	3 cut(s)	243, 327, 2317
TatI	WGTACW	3 cut(s)	48, 405, 2058
TauI	GCSGC	1 cut(s)	534
TfiI	GAWTC	9 cut(s)	995, 1129, 1148, 1475, 1730, 1799, 1891, 2045, 2205
TscAI	CASTG	5 cut(s)	930, 982, 1257, 1347, 1445
TseFI	GTSAC	2 cut(s)	593, 2366
TseI	GCWGC	5 cut(s)	82, 566, 1313, 2127, 2465
Tsp45I	GTSAC	2 cut(s)	593, 2366
TspGWI	ACGGA	2 cut(s)	14, 91
TspRI	CASTG	5 cut(s)	930, 982, 1257, 1347, 1445
Van91I	CCANNNNNTGG	1 cut(s)	1352
Vha464I	CTTAAG	1 cut(s)	1381
VpaK11BI	GGWCC	2 cut(s)	511, 2099
XapI	RAATTY	4 cut(s)	454, 658, 1664, 1853
XceI	RCATGY	2 cut(s)	2113, 2326
XcmI	CCANNNNNNNNNTGG	1 cut(s)	2266
XmiI	GTMKAC	1 cut(s)	336
XmnI	GAANNNNTTC	1 cut(s)	2204
XspI	CTAG	3 cut(s)	158, 2096, 2237
Zsp2I	ATGCAT	1 cut(s)	1168

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.