Ubiquitin carboxyl-terminal hydrolase
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| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_6g20680 FvH4_6g20680 FvH4_6g20680 |
| malus_domestica | MD00G1072700.v1.1 MD12G1043100.v1.1 MD14G1042200.v1.1 |
| prunus_persica | Prupe.7G091700_v2.0.a1 Prupe.7G091700_v2.0.a1 Prupe.7G091700_v2.0.a1 Prupe.7G091700_v2.0.a1 |
| pyrus_communis | pycom12g03720 pycom14g03580 |
| rosa_chinensis | RchiOBHm_Chr3g0476581 |
| rosa_laevigata | RLG00000001984 RLG00000023761 |
| rosa_multiflora | Rmu_sc0008241.1_g000007 Rmu_sc0020945.1_g000001 |
| rosa_roxburghii | Rroxscaffold_6G00405190 |
| rosa_rugosa | Rorug03G0155400 |
| rosa_samantha | Rh3AG206000 Rh3BG238600 Rh3CG232300 Rh3DG232200 Rh7DG310400 |
| rosa_wichuraiana | Rw3G018760 Rw7G026340 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AatII | GACGTC | 2 cut(s) | 441, 1850 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 2588 |
| AccI | GTMKAC | 3 cut(s) | 386, 1740, 1762 |
| AccII | CGCG | 3 cut(s) | 129, 501, 1988 |
| AciI | CCGC | 6 cut(s) | 55, 177, 211, 238, 1582, 2676 |
| AclWI | GGATC | 3 cut(s) | 1680, 1978, 2783 |
| AcsI | RAATTY | 5 cut(s) | 421, 567, 625, 750, 2149 |
| AcuI | CTGAAG | 2 cut(s) | 465, 2385 |
| AcyI | GRCGYC | 2 cut(s) | 438, 1847 |
| AfeI | AGCGCT | 1 cut(s) | 1693 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 196, 327, 1658, 1765, 2588 |
| AflII | CTTAAG | 1 cut(s) | 1687 |
| AflIII | ACRYGT | 2 cut(s) | 1884, 1986 |
| AgeI | ACCGGT | 1 cut(s) | 1488 |
| AgsI | TTSAA | 7 cut(s) | 427, 577, 821, 1149, 1249, 1572, 2338 |
| AjnI | CCWGG | 4 cut(s) | 790, 1216, 1305, 2023 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 813, 845 |
| Alw21I | GWGCWC | 1 cut(s) | 947 |
| Alw26I | GTCTC | 7 cut(s) | 32, 239, 616, 1340, 1838, 2242, 2380 |
| AlwI | GGATC | 3 cut(s) | 1680, 1978, 2783 |
| Aor51HI | AGCGCT | 1 cut(s) | 1693 |
| AoxI | GGCC | 3 cut(s) | 681, 1024, 1480 |
| ApeKI | GCWGC | 6 cut(s) | 267, 533, 1515, 1694, 2078, 2789 |
| ApoI | RAATTY | 5 cut(s) | 421, 567, 625, 750, 2149 |
| ArsI | GACNNNNNNTTYG | 4 cut(s) | 1576, 1608, 1837, 1869 |
| AseI | ATTAAT | 1 cut(s) | 771 |
| AsiGI | ACCGGT | 1 cut(s) | 1488 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 2528, 2751 |
| AspLEI | GCGC | 3 cut(s) | 131, 503, 1694 |
| AspS9I | GGNCC | 6 cut(s) | 199, 478, 681, 1600, 2277, 2423 |
| AsuHPI | GGTGA | 4 cut(s) | 1430, 1817, 2595, 2609 |
| AsuII | TTCGAA | 1 cut(s) | 343 |
| AsuNHI | GCTAGC | 1 cut(s) | 2471 |
| AvaII | GGWCC | 5 cut(s) | 199, 478, 1600, 2277, 2423 |
| AxyI | CCTNAGG | 1 cut(s) | 1021 |
| BaeGI | GKGCMC | 1 cut(s) | 1653 |
| BanII | GRGCYC | 2 cut(s) | 1216, 2024 |
| Bbv12I | GWGCWC | 1 cut(s) | 947 |
| BbvCI | CCTCAGC | 2 cut(s) | 1734, 2463 |
| BbvI | GCAGC | 6 cut(s) | 254, 545, 1527, 1681, 2065, 2776 |
| BccI | CCATC | 5 cut(s) | 1325, 1466, 1607, 1796, 1873 |
| BceAI | ACGGC | 5 cut(s) | 280, 281, 527, 546, 1354 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 103, 137 |
| BciT130I | CCWGG | 4 cut(s) | 792, 1218, 1307, 2025 |
| BciVI | GTATCC | 1 cut(s) | 2149 |
| BclI | TGATCA | 1 cut(s) | 1794 |
| BcoDI | GTCTC | 7 cut(s) | 32, 239, 616, 1340, 1838, 2242, 2380 |
| BfaI | CTAG | 7 cut(s) | 149, 1037, 1118, 1157, 2420, 2472, 2594 |
| BfmI | CTRYAG | 2 cut(s) | 322, 1003 |
| BfoI | RGCGCY | 1 cut(s) | 1695 |
| BfrI | CTTAAG | 1 cut(s) | 1687 |
| BfuI | GTATCC | 1 cut(s) | 2149 |
| BglII | AGATCT | 1 cut(s) | 1345 |
| BisI | GCNGC | 7 cut(s) | 268, 534, 1516, 1695, 2079, 2677, 2790 |
| BlsI | GCNGC | 7 cut(s) | 269, 535, 1517, 1696, 2080, 2678, 2791 |
| BmcAI | AGTACT | 1 cut(s) | 2001 |
| Bme1390I | CCNGG | 4 cut(s) | 792, 1218, 1307, 2025 |
| Bme18I | GGWCC | 5 cut(s) | 199, 478, 1600, 2277, 2423 |
| BmgT120I | GGNCC | 6 cut(s) | 199, 478, 681, 1600, 2277, 2423 |
| BmiI | GGNNCC | 5 cut(s) | 200, 480, 1018, 1215, 1236 |
| BmrFI | CCNGG | 4 cut(s) | 792, 1218, 1307, 2025 |
| BmrI | ACTGGG | 2 cut(s) | 205, 891 |
| BmsI | GCATC | 3 cut(s) | 388, 2104, 2173 |
| BmtI | GCTAGC | 1 cut(s) | 2475 |
| BmuI | ACTGGG | 2 cut(s) | 205, 891 |
| BoxI | GACNNNNGTC | 1 cut(s) | 1887 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 1255, 1287 |
| BpmI | CTGGAG | 2 cut(s) | 1200, 2046 |
| Bpu10I | CCTNAGC | 4 cut(s) | 1383, 1604, 1734, 2463 |
| Bpu14I | TTCGAA | 1 cut(s) | 343 |
| BsaBI | GATNNNNATC | 2 cut(s) | 891, 1350 |
| BsaHI | GRCGYC | 2 cut(s) | 438, 1847 |
| BsaI | GGTCTC | 2 cut(s) | 1340, 2242 |
| BsaJI | CCNNGG | 5 cut(s) | 180, 832, 1305, 1477, 2023 |
| BsaWI | WCCGGW | 3 cut(s) | 1128, 1488, 2818 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 813, 843 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 196, 327, 1658, 1765, 2588 |
| Bse118I | RCCGGY | 1 cut(s) | 1488 |
| Bse1I | ACTGG | 7 cut(s) | 200, 897, 1229, 1483, 1770, 2167, 2629 |
| Bse21I | CCTNAGG | 1 cut(s) | 1021 |
| Bse3DI | GCAATG | 5 cut(s) | 713, 1456, 1622, 1949, 1972 |
| Bse8I | GATNNNNATC | 2 cut(s) | 891, 1350 |
| BseBI | CCWGG | 4 cut(s) | 792, 1218, 1307, 2025 |
| BseDI | CCNNGG | 5 cut(s) | 180, 832, 1305, 1477, 2023 |
| BseGI | GGATG | 5 cut(s) | 586, 892, 1336, 1393, 2146 |
| BseJI | GATNNNNATC | 2 cut(s) | 891, 1350 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 196, 327, 1658, 1765, 2588 |
| BseMI | GCAATG | 5 cut(s) | 713, 1456, 1622, 1949, 1972 |
| BseMII | CTCAG | 8 cut(s) | 520, 747, 1397, 1725, 2136, 2253, 2477, 2493 |
| BseNI | ACTGG | 7 cut(s) | 200, 897, 1229, 1483, 1770, 2167, 2629 |
| BseRI | GAGGAG | 9 cut(s) | 65, 85, 151, 154, 157, 160, 163, 883, 1023 |
| BseSI | GKGCMC | 1 cut(s) | 1653 |
| BseXI | GCAGC | 6 cut(s) | 254, 545, 1527, 1681, 2065, 2776 |
| BseYI | CCCAGC | 2 cut(s) | 215, 228 |
| BsgI | GTGCAG | 1 cut(s) | 582 |
| Bsh1236I | CGCG | 3 cut(s) | 129, 501, 1988 |
| Bsh1285I | CGRYCG | 1 cut(s) | 2232 |
| BshFI | GGCC | 3 cut(s) | 683, 1026, 1482 |
| BshTI | ACCGGT | 1 cut(s) | 1488 |
| BsiEI | CGRYCG | 1 cut(s) | 2232 |
| BsiHKAI | GWGCWC | 1 cut(s) | 947 |
| BsiSI | CCGG | 3 cut(s) | 1129, 1489, 2819 |
| BslFI | GGGAC | 7 cut(s) | 103, 212, 464, 740, 1630, 1834, 1901 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 196, 327, 1658, 1765, 2588 |
| BsmAI | GTCTC | 7 cut(s) | 32, 239, 616, 1340, 1838, 2242, 2380 |
| BsmBI | CGTCTC | 3 cut(s) | 32, 239, 1838 |
| BsmFI | GGGAC | 7 cut(s) | 103, 212, 464, 740, 1630, 1834, 1901 |
| BsmI | GAATGC | 1 cut(s) | 1932 |
| BsnI | GGCC | 3 cut(s) | 683, 1026, 1482 |
| Bso31I | GGTCTC | 2 cut(s) | 1340, 2242 |
| Bsp119I | TTCGAA | 1 cut(s) | 343 |
| Bsp1286I | GDGCHC | 4 cut(s) | 947, 1216, 1653, 2024 |
| Bsp1407I | TGTACA | 4 cut(s) | 42, 375, 1631, 2382 |
| Bsp143I | GATC | 9 cut(s) | 355, 642, 1345, 1672, 1794, 1815, 1970, 2229, 2775 |
| Bsp19I | CCATGG | 2 cut(s) | 180, 832 |
| BspACI | CCGC | 6 cut(s) | 55, 177, 211, 238, 1582, 2676 |
| BspANI | GGCC | 3 cut(s) | 683, 1026, 1482 |
| BspCNI | CTCAG | 8 cut(s) | 519, 746, 1396, 1726, 2135, 2252, 2476, 2494 |
| BspFNI | CGCG | 3 cut(s) | 129, 501, 1988 |
| BspHI | TCATGA | 1 cut(s) | 756 |
| BspLI | GGNNCC | 5 cut(s) | 200, 480, 1018, 1215, 1236 |
| BspOI | GCTAGC | 1 cut(s) | 2475 |
| BspPI | GGATC | 3 cut(s) | 1680, 1978, 2783 |
| BspT104I | TTCGAA | 1 cut(s) | 343 |
| BspTI | CTTAAG | 1 cut(s) | 1687 |
| BspTNI | GGTCTC | 2 cut(s) | 1340, 2242 |
| BsrDI | GCAATG | 5 cut(s) | 713, 1456, 1622, 1949, 1972 |
| BsrFI | RCCGGY | 1 cut(s) | 1488 |
| BsrGI | TGTACA | 4 cut(s) | 42, 375, 1631, 2382 |
| BsrI | ACTGG | 7 cut(s) | 200, 897, 1229, 1483, 1770, 2167, 2629 |
| BssAI | RCCGGY | 1 cut(s) | 1488 |
| BssECI | CCNNGG | 5 cut(s) | 180, 832, 1305, 1477, 2023 |
| BssMI | GATC | 9 cut(s) | 355, 642, 1345, 1672, 1794, 1815, 1970, 2229, 2775 |
| BssNAI | GTATAC | 1 cut(s) | 1741 |
| BssNI | GRCGYC | 2 cut(s) | 438, 1847 |
| BssT1I | CCWWGG | 3 cut(s) | 180, 832, 1477 |
| Bst1107I | GTATAC | 1 cut(s) | 1741 |
| Bst2UI | CCWGG | 4 cut(s) | 792, 1218, 1307, 2025 |
| Bst4CI | ACNGT | 6 cut(s) | 664, 767, 1070, 1600, 1642, 1648 |
| Bst6I | CTCTTC | 2 cut(s) | 41, 2806 |
| BstACI | GRCGYC | 2 cut(s) | 438, 1847 |
| BstAFI | CTTAAG | 1 cut(s) | 1687 |
| BstAUI | TGTACA | 4 cut(s) | 42, 375, 1631, 2382 |
| BstBI | TTCGAA | 1 cut(s) | 343 |
| BstC8I | GCNNGC | 8 cut(s) | 127, 403, 685, 1367, 1447, 1731, 2469, 2473 |
| BstDSI | CCRYGG | 2 cut(s) | 180, 832 |
| BstEII | GGTNACC | 1 cut(s) | 1805 |
| BstF5I | GGATG | 5 cut(s) | 586, 892, 1336, 1393, 2146 |
| BstFNI | CGCG | 3 cut(s) | 129, 501, 1988 |
| BstH2I | RGCGCY | 1 cut(s) | 1695 |
| BstHHI | GCGC | 3 cut(s) | 131, 503, 1694 |
| BstKTI | GATC | 9 cut(s) | 358, 645, 1348, 1675, 1797, 1818, 1973, 2232, 2778 |
| BstMAI | GTCTC | 7 cut(s) | 32, 239, 616, 1340, 1838, 2242, 2380 |
| BstMBI | GATC | 9 cut(s) | 355, 642, 1345, 1672, 1794, 1815, 1970, 2229, 2775 |
| BstMCI | CGRYCG | 1 cut(s) | 2232 |
| BstMWI | GCNNNNNNNGC | 6 cut(s) | 1220, 1268, 1512, 1691, 2192, 2451 |
| BstNI | CCWGG | 4 cut(s) | 792, 1218, 1307, 2025 |
| BstNSI | RCATGY | 3 cut(s) | 1701, 1888, 2310 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 1887 |
| BstPI | GGTNACC | 1 cut(s) | 1805 |
| BstSCI | CCNGG | 4 cut(s) | 790, 1216, 1305, 2023 |
| BstSFI | CTRYAG | 2 cut(s) | 322, 1003 |
| BstSLI | GKGCMC | 1 cut(s) | 1653 |
| BstUI | CGCG | 3 cut(s) | 129, 501, 1988 |
| BstV1I | GCAGC | 6 cut(s) | 254, 545, 1527, 1681, 2065, 2776 |
| BstX2I | RGATCY | 3 cut(s) | 1345, 1672, 1970 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 1283 |
| BstYI | RGATCY | 3 cut(s) | 1345, 1672, 1970 |
| BstZ17I | GTATAC | 1 cut(s) | 1741 |
| Bsu36I | CCTNAGG | 1 cut(s) | 1021 |
| BsuI | GTATCC | 1 cut(s) | 2149 |
| BsuRI | GGCC | 3 cut(s) | 683, 1026, 1482 |
| BtgI | CCRYGG | 2 cut(s) | 180, 832 |
| BtsCI | GGATG | 5 cut(s) | 586, 892, 1336, 1393, 2146 |
| BtsI | GCAGTG | 1 cut(s) | 378 |
| BtsIMutI | CAGTG | 6 cut(s) | 378, 945, 1075, 1236, 1288, 1653 |
| Cac8I | GCNNGC | 8 cut(s) | 127, 403, 685, 1367, 1447, 1731, 2469, 2473 |
| CciI | TCATGA | 1 cut(s) | 756 |
| CfoI | GCGC | 3 cut(s) | 131, 503, 1694 |
| Cfr10I | RCCGGY | 1 cut(s) | 1488 |
| Cfr13I | GGNCC | 6 cut(s) | 199, 478, 681, 1600, 2277, 2423 |
| CseI | GACGC | 2 cut(s) | 221, 372 |
| CspAI | ACCGGT | 1 cut(s) | 1488 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 1212, 1247 |
| DpnI | GATC | 9 cut(s) | 357, 644, 1347, 1674, 1796, 1817, 1972, 2231, 2777 |
| DpnII | GATC | 9 cut(s) | 355, 642, 1345, 1672, 1794, 1815, 1970, 2229, 2775 |
| DraI | TTTAAA | 1 cut(s) | 2316 |
| Eam1104I | CTCTTC | 2 cut(s) | 41, 2806 |
| EarI | CTCTTC | 2 cut(s) | 41, 2806 |
| EciI | GGCGGA | 3 cut(s) | 166, 200, 227 |
| Eco130I | CCWWGG | 3 cut(s) | 180, 832, 1477 |
| Eco147I | AGGCCT | 1 cut(s) | 1026 |
| Eco24I | GRGCYC | 2 cut(s) | 1216, 2024 |
| Eco31I | GGTCTC | 2 cut(s) | 1340, 2242 |
| Eco47I | GGWCC | 5 cut(s) | 199, 478, 1600, 2277, 2423 |
| Eco47III | AGCGCT | 1 cut(s) | 1693 |
| Eco57I | CTGAAG | 2 cut(s) | 465, 2385 |
| Eco81I | CCTNAGG | 1 cut(s) | 1021 |
| Eco91I | GGTNACC | 1 cut(s) | 1805 |
| EcoO109I | RGGNCCY | 2 cut(s) | 199, 681 |
| EcoO65I | GGTNACC | 1 cut(s) | 1805 |
| EcoRI | GAATTC | 1 cut(s) | 625 |
| EcoRII | CCWGG | 4 cut(s) | 790, 1216, 1305, 2023 |
| EcoT14I | CCWWGG | 3 cut(s) | 180, 832, 1477 |
| EcoT22I | ATGCAT | 1 cut(s) | 475 |
| EcoT38I | GRGCYC | 2 cut(s) | 1216, 2024 |
| ErhI | CCWWGG | 3 cut(s) | 180, 832, 1477 |
| Esp3I | CGTCTC | 3 cut(s) | 32, 239, 1838 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 1158, 1190 |
| FaqI | GGGAC | 7 cut(s) | 103, 212, 464, 740, 1630, 1834, 1901 |
| FauI | CCCGC | 1 cut(s) | 62 |
| FbaI | TGATCA | 1 cut(s) | 1794 |
| FblI | GTMKAC | 3 cut(s) | 386, 1740, 1762 |
| Fnu4HI | GCNGC | 7 cut(s) | 268, 534, 1516, 1695, 2079, 2677, 2790 |
| FokI | GGATG | 5 cut(s) | 593, 879, 1343, 1400, 2153 |
| FriOI | GRGCYC | 2 cut(s) | 1216, 2024 |
| Fsp4HI | GCNGC | 7 cut(s) | 268, 534, 1516, 1695, 2079, 2677, 2790 |
| FspBI | CTAG | 7 cut(s) | 149, 1037, 1118, 1157, 2420, 2472, 2594 |
| GlaI | GCGC | 3 cut(s) | 130, 502, 1693 |
| GluI | GCNGC | 7 cut(s) | 268, 534, 1516, 1695, 2079, 2677, 2790 |
| GsaI | CCCAGC | 2 cut(s) | 219, 232 |
| GsuI | CTGGAG | 2 cut(s) | 1200, 2046 |
| HaeII | RGCGCY | 1 cut(s) | 1695 |
| HaeIII | GGCC | 3 cut(s) | 683, 1026, 1482 |
| HapII | CCGG | 3 cut(s) | 1129, 1489, 2819 |
| HgaI | GACGC | 2 cut(s) | 221, 372 |
| HhaI | GCGC | 3 cut(s) | 131, 503, 1694 |
| Hin1I | GRCGYC | 2 cut(s) | 438, 1847 |
| Hin6I | GCGC | 3 cut(s) | 129, 501, 1692 |
| HinP1I | GCGC | 3 cut(s) | 129, 501, 1692 |
| HpaII | CCGG | 3 cut(s) | 1129, 1489, 2819 |
| HphI | GGTGA | 4 cut(s) | 1430, 1817, 2595, 2609 |
| Hpy166II | GTNNAC | 4 cut(s) | 378, 387, 1741, 1763 |
| Hpy188III | TCNNGA | 9 cut(s) | 574, 757, 1385, 1403, 1993, 2353, 2594, 2768, 2779 |
| Hpy8I | GTNNAC | 4 cut(s) | 378, 387, 1741, 1763 |
| Hpy99I | CGWCG | 9 cut(s) | 251, 260, 263, 266, 281, 284, 302, 398, 443 |
| HpyAV | CCTTC | 9 cut(s) | 163, 328, 427, 443, 571, 1126, 1578, 1656, 2401 |
| HpyCH4III | ACNGT | 6 cut(s) | 664, 767, 1070, 1600, 1642, 1648 |
| HpyCH4IV | ACGT | 6 cut(s) | 282, 438, 546, 1847, 1862, 2796 |
| HpyF10VI | GCNNNNNNNGC | 6 cut(s) | 1220, 1268, 1512, 1691, 2192, 2451 |
| HpySE526I | ACGT | 6 cut(s) | 282, 438, 546, 1847, 1862, 2796 |
| Hsp92I | GRCGYC | 2 cut(s) | 438, 1847 |
| HspAI | GCGC | 3 cut(s) | 129, 501, 1692 |
| Ksp22I | TGATCA | 1 cut(s) | 1794 |
| Kzo9I | GATC | 9 cut(s) | 355, 642, 1345, 1672, 1794, 1815, 1970, 2229, 2775 |
| LmnI | GCTCC | 8 cut(s) | 27, 108, 230, 942, 1010, 1219, 1240, 1276 |
| Lsp1109I | GCAGC | 6 cut(s) | 254, 545, 1527, 1681, 2065, 2776 |
| LweI | GCATC | 3 cut(s) | 388, 2104, 2173 |
| MaeI | CTAG | 7 cut(s) | 149, 1037, 1118, 1157, 2420, 2472, 2594 |
| MaeII | ACGT | 6 cut(s) | 282, 438, 546, 1847, 1862, 2796 |
| MaeIII | GTNAC | 9 cut(s) | 1528, 1642, 1805, 1827, 1858, 1889, 1982, 2615, 2690 |
| MalI | GATC | 9 cut(s) | 357, 644, 1347, 1674, 1796, 1817, 1972, 2231, 2777 |
| MboI | GATC | 9 cut(s) | 355, 642, 1345, 1672, 1794, 1815, 1970, 2229, 2775 |
| MflI | RGATCY | 3 cut(s) | 1345, 1672, 1970 |
| MhlI | GDGCHC | 4 cut(s) | 947, 1216, 1653, 2024 |
| MluI | ACGCGT | 1 cut(s) | 1986 |
| MlyI | GAGTC | 4 cut(s) | 3, 822, 1448, 2114 |
| MmeI | TCCRAC | 4 cut(s) | 998, 1308, 1650, 2238 |
| Mph1103I | ATGCAT | 1 cut(s) | 475 |
| MroXI | GAANNNNTTC | 2 cut(s) | 2528, 2751 |
| MseI | TTAA | 9 cut(s) | 771, 968, 1688, 1706, 2004, 2036, 2315, 2394, 2550 |
| MslI | CAYNNNNRTG | 1 cut(s) | 1896 |
| MspA1I | CMGCKG | 1 cut(s) | 2789 |
| MspCI | CTTAAG | 1 cut(s) | 1687 |
| MspI | CCGG | 3 cut(s) | 1129, 1489, 2819 |
| MspR9I | CCNGG | 4 cut(s) | 792, 1218, 1307, 2025 |
| Mva1269I | GAATGC | 1 cut(s) | 1932 |
| MvaI | CCWGG | 4 cut(s) | 792, 1218, 1307, 2025 |
| MvnI | CGCG | 3 cut(s) | 129, 501, 1988 |
| MwoI | GCNNNNNNNGC | 6 cut(s) | 1220, 1268, 1512, 1691, 2192, 2451 |
| NcoI | CCATGG | 2 cut(s) | 180, 832 |
| NdeII | GATC | 9 cut(s) | 355, 642, 1345, 1672, 1794, 1815, 1970, 2229, 2775 |
| NheI | GCTAGC | 1 cut(s) | 2471 |
| NlaIV | GGNNCC | 5 cut(s) | 200, 480, 1018, 1215, 1236 |
| NmuCI | GTSAC | 5 cut(s) | 1642, 1805, 1889, 2615, 2690 |
| NsiI | ATGCAT | 1 cut(s) | 475 |
| NspI | RCATGY | 3 cut(s) | 1701, 1888, 2310 |
| NspV | TTCGAA | 1 cut(s) | 343 |
| PagI | TCATGA | 1 cut(s) | 756 |
| PceI | AGGCCT | 1 cut(s) | 1026 |
| PciI | ACATGT | 1 cut(s) | 1884 |
| PcsI | WCGNNNNNNNCGW | 4 cut(s) | 229, 252, 255, 1756 |
| PctI | GAATGC | 1 cut(s) | 1932 |
| PdmI | GAANNNNTTC | 2 cut(s) | 2528, 2751 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 2588 |
| PfoI | TCCNGGA | 1 cut(s) | 790 |
| PinAI | ACCGGT | 1 cut(s) | 1488 |
| PkrI | GCNGC | 7 cut(s) | 269, 535, 1517, 1696, 2080, 2678, 2791 |
| Ple19I | CGATCG | 1 cut(s) | 2232 |
| PleI | GAGTC | 4 cut(s) | 3, 822, 1448, 2114 |
| PpsI | GAGTC | 4 cut(s) | 3, 822, 1448, 2114 |
| PpuMI | RGGWCCY | 1 cut(s) | 199 |
| PscI | ACATGT | 1 cut(s) | 1884 |
| PshAI | GACNNNNGTC | 1 cut(s) | 1887 |
| PshBI | ATTAAT | 1 cut(s) | 771 |
| Psp5II | RGGWCCY | 1 cut(s) | 199 |
| Psp6I | CCWGG | 4 cut(s) | 790, 1216, 1305, 2023 |
| PspEI | GGTNACC | 1 cut(s) | 1805 |
| PspFI | CCCAGC | 2 cut(s) | 215, 228 |
| PspGI | CCWGG | 4 cut(s) | 790, 1216, 1305, 2023 |
| PspN4I | GGNNCC | 5 cut(s) | 200, 480, 1018, 1215, 1236 |
| PspPI | GGNCC | 6 cut(s) | 199, 478, 681, 1600, 2277, 2423 |
| PspPPI | RGGWCCY | 1 cut(s) | 199 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 892, 924 |
| PsuI | RGATCY | 3 cut(s) | 1345, 1672, 1970 |
| PvuI | CGATCG | 1 cut(s) | 2232 |
| PvuII | CAGCTG | 1 cut(s) | 2789 |
| RseI | CAYNNNNRTG | 1 cut(s) | 1896 |
| SaqAI | TTAA | 9 cut(s) | 771, 968, 1688, 1706, 2004, 2036, 2315, 2394, 2550 |
| SatI | GCNGC | 7 cut(s) | 268, 534, 1516, 1695, 2079, 2677, 2790 |
| Sau3AI | GATC | 9 cut(s) | 355, 642, 1345, 1672, 1794, 1815, 1970, 2229, 2775 |
| Sau96I | GGNCC | 6 cut(s) | 199, 478, 681, 1600, 2277, 2423 |
| ScaI | AGTACT | 1 cut(s) | 2001 |
| SchI | GAGTC | 4 cut(s) | 3, 822, 1448, 2114 |
| ScrFI | CCNGG | 4 cut(s) | 792, 1218, 1307, 2025 |
| SduI | GDGCHC | 4 cut(s) | 947, 1216, 1653, 2024 |
| SfaNI | GCATC | 3 cut(s) | 388, 2104, 2173 |
| SfcI | CTRYAG | 2 cut(s) | 322, 1003 |
| SfuI | TTCGAA | 1 cut(s) | 343 |
| SinI | GGWCC | 5 cut(s) | 199, 478, 1600, 2277, 2423 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 1896 |
| SmlI | CTYRAG | 1 cut(s) | 1687 |
| SmoI | CTYRAG | 1 cut(s) | 1687 |
| SseBI | AGGCCT | 1 cut(s) | 1026 |
| SsiI | CCGC | 6 cut(s) | 55, 177, 211, 238, 1582, 2676 |
| SspI | AATATT | 3 cut(s) | 691, 1427, 2041 |
| SspMI | CTAG | 7 cut(s) | 149, 1037, 1118, 1157, 2420, 2472, 2594 |
| StuI | AGGCCT | 1 cut(s) | 1026 |
| StyD4I | CCNGG | 4 cut(s) | 790, 1216, 1305, 2023 |
| StyI | CCWWGG | 3 cut(s) | 180, 832, 1477 |
| TaaI | ACNGT | 6 cut(s) | 664, 767, 1070, 1600, 1642, 1648 |
| TaiI | ACGT | 6 cut(s) | 285, 441, 549, 1850, 1865, 2799 |
| TaqI | TCGA | 6 cut(s) | 204, 272, 300, 343, 1377, 2562 |
| TaqII | GACCGA | 1 cut(s) | 1824 |
| TatI | WGTACW | 5 cut(s) | 42, 375, 1631, 1999, 2382 |
| TauI | GCSGC | 1 cut(s) | 2679 |
| Tru1I | TTAA | 9 cut(s) | 771, 968, 1688, 1706, 2004, 2036, 2315, 2394, 2550 |
| Tru9I | TTAA | 9 cut(s) | 771, 968, 1688, 1706, 2004, 2036, 2315, 2394, 2550 |
| TscAI | CASTG | 6 cut(s) | 385, 952, 1075, 1236, 1288, 1653 |
| TseFI | GTSAC | 5 cut(s) | 1642, 1805, 1889, 2615, 2690 |
| TseI | GCWGC | 6 cut(s) | 267, 533, 1515, 1694, 2078, 2789 |
| Tsp45I | GTSAC | 5 cut(s) | 1642, 1805, 1889, 2615, 2690 |
| TspGWI | ACGGA | 4 cut(s) | 14, 404, 1516, 1748 |
| TspRI | CASTG | 6 cut(s) | 385, 952, 1075, 1236, 1288, 1653 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 2588 |
| Vha464I | CTTAAG | 1 cut(s) | 1687 |
| VpaK11BI | GGWCC | 5 cut(s) | 199, 478, 1600, 2277, 2423 |
| VspI | ATTAAT | 1 cut(s) | 771 |
| XapI | RAATTY | 5 cut(s) | 421, 567, 625, 750, 2149 |
| XbaI | TCTAGA | 1 cut(s) | 2593 |
| XceI | RCATGY | 3 cut(s) | 1701, 1888, 2310 |
| XcmI | CCANNNNNNNNNTGG | 3 cut(s) | 720, 1081, 2433 |
| XmiI | GTMKAC | 3 cut(s) | 386, 1740, 1762 |
| XmnI | GAANNNNTTC | 2 cut(s) | 2528, 2751 |
| XspI | CTAG | 7 cut(s) | 149, 1037, 1118, 1157, 2420, 2472, 2594 |
| ZraI | GACGTC | 2 cut(s) | 439, 1848 |
| ZrmI | AGTACT | 1 cut(s) | 2001 |
| Zsp2I | ATGCAT | 1 cut(s) | 475 |