Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0008241.1

Orthogroup ID

OG0006941

Physical Location & Seq

Genomic Coordinates Forward (+)

44477 .. 55301

Gene Structure 10825 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0008241.1_g000007.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3402 bp

atgacccgactctcggaaaagctccgtctgtgtctcttccttcttctgtacaatccaacccggtttctctctcctccaaagcagctcttggccactctctccgtctccacgctccacctctgcaagtccctcgcacgcgccctcgcctccaaaaccctagccctcttcttcttcttcttcttcttcgccatggacgaccccttccccttcgcctctgccgacggcgacaacgacggctgggacttcgacctccagtcccgcaaccgcgcccagcgcccccgcctcctccacgactacgacgacgacgacgacgtttccgacaatgccgtcgataaggtctacctcgttccctacaggtggtggaaggaggttcggaccgaagacgatgatcgtggcgaaggggtattgtacagcacttcgccggaggaagacgactccggctcggaaattgtgttgagtttgaggaagagggactctgctgaagaagggttttcaggtcgcgagtatgccttggtccctgaagcgacatggtgccgtgcactcatacggcattatgattttaatacagcagcaatggataatgtgagcttctttggtgacgaagagtttttaaaggatgtcttttctttacaaattaggctctttgtttcctgggaaacaaattcattggttgtaaagatcagccaaaaggataatgcggttgattctttcaagagagcctgcattattttcagttcagagcccgagccattgcatatttgggacttctcagggcagacaacccaatttttcatgaatgacagaattagtttgccaaatgacattcctggacaactgaacaaagagattgtcctggaattgcatcttcatggcttttcagaggtcagaggttggaggagtgatgacatggctgaaaaccacttcagtattgatggttgtattagtggtggctcttctaaaatgaatgggaacatttactacgtcaatccctacttaaactcaagcaactcctggcgaagtgctgttatgtatagaggagttggttctttaggcttaactggtataaagaatcttgggaatacttgttttatgaacagtgcaatccaatgtttggtgcacactccaaagcttgttgactattttctaggagattaccggaaggacatgaactatcagaacccattgggaatgaaaggagagcttgcttttgcatttggagaattattgaggagattatgggctccaggtgcaaggccagtggctccaagaatgttcaagcaaaaacttgccagttttgctcctcaattcagtggctataatcaacatgattcccaggaactccttgcttttttgctggatggtctccatgaagatctaaatcgtgtgaaatgcaagccatattttgaagctaaagatgcagagggccgtccagatgaagaagtggcggaagaatattggcggaatcaccttgctcgcaatgattccattattgttaatgcataccagggtcaataccggtcaaaattggtttgccccgattgcaacaaggtgtccattacatttgacccatttatgtatctatcactgccattaccttctacaacaatgcggagtatgactttgacggttttaagcacagatggtgctgcgttgcctactacatttactgtaacagtgccaaagagtgggaagctcgtggatcttactaaagccttaagtattgcctgttctctaagagatgatgaaaccctgttggtggctgagatataccagtgtcgcatatttcgtttattggaggatccatctgattcattagcctttgttagagacgctgacaaactggttgcttatcgcttaccaaaagattttgagcgatcgcacttggttgtttttcttcatcaggagaagggaaagtattactataatcaagacacaatcggtatcccacttttagcaagggtttctgatccttgttatggatctgatattcgcaacgaattcctaaataatttaaatccattcttgaagcctgatggagatatatcagatgtttttgatgatgattctggaaactgtgctaatgaagactctaacaaggaggatgtcagtagtcctacagtttgggataatgattctgacacagacaggggaacaatgggtgaagtgctgttggatactgacttcaaattttacttagcggatacaagaaaggaaatagagttgaatcagctgatagaggtctcacggttgcctgtgataccaaggcctaagatactggaggtgattgttttatggacagatgagatgattaacaagtatgatacacgccttctaaactctttgcctgaggtcttcaacattttcacgagtagtgaagaatctgtttccctgtacaaatgccttgaggcctttctgaaggaagaacctctaggacctgaagacatgtggttctgccctagctgcaagactcctcggcaagccagcaaaaagttagatctttggagattgcctgagatattggttattcatctgaaaagattctcgtatgaccattattttaagaacaagctagaaacattagttgattttcccatttatgatatgcacatctcaacatacattacccaccgcagtaaccagttatccagtcaatacatgttgtacgctatcagtaatcactatggtggcttgggtggtggtcactatacggcatttgttcatctcggtaagggttcatggtatgagtttgatgatgacagagtttctgctgttaatgtggagaggattaagacttcggcagcatatgttcttttctaccgaagagtatttggagttctgagcactttttcagatgaggaagagacatttggagagcgcaataacactatacttgacactaataatgtggattctactttggtagaatctagtgttcatcaatccaagttcttttggggtctcagtataataccaatggctgcttctgtgactggaacagcacatgaagatgctgcaattagagggggagataagcttgtactaaggggtttgaagttccatggtttccatggggtgaagccagaagaaaggaagttgggtcagaagtttctgatagatgttgatgcttggatggatcttcgggtggccggaagatctgatcagttgtcagacaccattagctacaccgaaatttatcgcattgtaaaagaggttgtagaagggccacctcataatcttctggagtctgttgctgaactcattgcatctacaactctgaaaaactatccccagatatctgctgtctctgtgaaagttggaaagcctcacgttgctgttcatggtcctcttgattacttgggtgttgagatatttagatacagaagtattgatgcaccgaactaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04137 map04137

Pfam Domains

Protein Families

UCH

Protein Analysis

1133

Amino Acids

128.97

Weight (kDa)

5.17

Isoelectric Point (pI)

39.8

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006941)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g20680 FvH4_6g20680 FvH4_6g20680
malus_domestica	MD00G1072700.v1.1 MD12G1043100.v1.1 MD14G1042200.v1.1
prunus_persica	Prupe.7G091700_v2.0.a1 Prupe.7G091700_v2.0.a1 Prupe.7G091700_v2.0.a1 Prupe.7G091700_v2.0.a1
pyrus_communis	pycom12g03720 pycom14g03580
rosa_chinensis	RchiOBHm_Chr3g0476581
rosa_laevigata	RLG00000001984 RLG00000023761
rosa_multiflora	Rmu_sc0008241.1_g000007 Rmu_sc0020945.1_g000001
rosa_roxburghii	Rroxscaffold_6G00405190
rosa_rugosa	Rorug03G0155400
rosa_samantha	Rh3AG206000 Rh3BG238600 Rh3CG232300 Rh3DG232200 Rh7DG310400
rosa_wichuraiana	Rw3G018760 Rw7G026340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	326
AccB1I	GGYRCC	1 cut(s)	531
AccB7I	CCANNNNNTGG	2 cut(s)	1111, 1685
AccI	GTMKAC	1 cut(s)	339
AccII	CGCG	3 cut(s)	138, 267, 501
AciI	CCGC	9 cut(s)	259, 265, 280, 698, 1445, 1459, 1609, 2198, 2629
AclWI	GGATC	6 cut(s)	1707, 1793, 1806, 1961, 1987, 3141
AcoI	YGGCCR	2 cut(s)	90, 3144
AcsI	RAATTY	4 cut(s)	661, 1997, 2186, 3189
AcuI	CTGAAG	5 cut(s)	501, 540, 907, 2435, 2457
AfaI	GTAC	5 cut(s)	50, 410, 2393, 2663, 3039
AfiI	CCNNNNNNNGG	6 cut(s)	13, 357, 1111, 1685, 1756, 1976
AflII	CTTAAG	1 cut(s)	1714
AflIII	ACRYGT	2 cut(s)	2442, 2655
AgeI	ACCGGT	1 cut(s)	1515
AgsI	TTSAA	8 cut(s)	712, 1276, 1406, 2026, 2185, 2224, 2356, 3052
AhdI	GACNNNNNGTC	1 cut(s)	253
AjnI	CCWGG	7 cut(s)	650, 826, 852, 1010, 1243, 1332, 1503
AjuI	GAANNNNNNNTTGG	4 cut(s)	2850, 2882, 2965, 2997
AleI	CACNNNNGTG	1 cut(s)	2682
Alw21I	GWGCWC	3 cut(s)	541, 1119, 2843
Alw26I	GTCTC	8 cut(s)	38, 109, 1367, 1821, 2245, 2855, 2963, 3307
Alw44I	GTGCAC	2 cut(s)	537, 1115
AlwI	GGATC	6 cut(s)	1707, 1793, 1806, 1961, 1987, 3141
Ama87I	CYCGRG	1 cut(s)	743
AoxI	GGCC	7 cut(s)	90, 1253, 1423, 2264, 2406, 3144, 3221
ApaLI	GTGCAC	2 cut(s)	537, 1115
ApeKI	GCWGC	7 cut(s)	82, 569, 1646, 2460, 2798, 2978, 3011
ApoI	RAATTY	4 cut(s)	661, 1997, 2186, 3189
ArsI	GACNNNNNNTTYG	2 cut(s)	834, 866
AsiGI	ACCGGT	1 cut(s)	1515
AsiSI	GCGATCGC	1 cut(s)	1877
Asp700I	GAANNNNTTC	1 cut(s)	2537
AspLEI	GCGC	4 cut(s)	140, 269, 276, 2877
AspS9I	GGNCC	6 cut(s)	375, 514, 1423, 2432, 3221, 3341
AsuC2I	CCSGG	1 cut(s)	61
AsuHPI	GGTGA	5 cut(s)	608, 1457, 2171, 2293, 3085
AvaI	CYCGRG	1 cut(s)	743
AvaII	GGWCC	4 cut(s)	375, 514, 2432, 3341
AxyI	CCTNAGG	1 cut(s)	2346
BaeGI	GKGCMC	2 cut(s)	541, 1119
BaeI	ACNNNNGTAYC	2 cut(s)	3367, 3400
BalI	TGGCCA	1 cut(s)	92
BamHI	GGATCC	1 cut(s)	1798
BanI	GGYRCC	1 cut(s)	531
BanII	GRGCYC	2 cut(s)	744, 1243
BauI	CACGAG	2 cut(s)	1694, 2365
BbsI	GAAGAC	5 cut(s)	387, 435, 2091, 2344, 2445
Bbv12I	GWGCWC	3 cut(s)	541, 1119, 2843
BbvI	GCAGC	7 cut(s)	94, 581, 1633, 2447, 2810, 2965, 2998
BccI	CCATC	6 cut(s)	926, 1352, 1634, 1810, 2027, 3124
BceAI	ACGGC	7 cut(s)	238, 250, 311, 519, 563, 1410, 2724
BcgI	CGANNNNNNTGC	2 cut(s)	112, 146
BciT130I	CCWGG	7 cut(s)	652, 828, 854, 1012, 1245, 1334, 1505
BciVI	GTATCC	3 cut(s)	1952, 2167, 2194
BclI	TGATCA	1 cut(s)	3157
BcnI	CCSGG	1 cut(s)	61
BcoDI	GTCTC	8 cut(s)	38, 109, 1367, 1821, 2245, 2855, 2963, 3307
BfaI	CTAG	6 cut(s)	158, 1145, 2429, 2457, 2570, 2928
BfmI	CTRYAG	2 cut(s)	352, 2115
BfoI	RGCGCY	1 cut(s)	277
BfrI	CTTAAG	1 cut(s)	1714
BfuI	GTATCC	3 cut(s)	1952, 2167, 2194
BglII	AGATCT	3 cut(s)	1372, 2494, 3152
BisI	GCNGC	7 cut(s)	83, 570, 1647, 2461, 2799, 2979, 3012
BlsI	GCNGC	7 cut(s)	84, 571, 1648, 2462, 2800, 2980, 3013
Bme1390I	CCNGG	8 cut(s)	61, 652, 828, 854, 1012, 1245, 1334, 1505
Bme18I	GGWCC	4 cut(s)	375, 514, 2432, 3341
BmeRI	GACNNNNNGTC	1 cut(s)	253
BmeT110I	CYCGRG	1 cut(s)	743
BmgT120I	GGNCC	6 cut(s)	375, 514, 1423, 2432, 3221, 3341
BmiI	GGNNCC	5 cut(s)	516, 533, 1242, 1263, 1800
BmrFI	CCNGG	8 cut(s)	61, 652, 828, 854, 1012, 1245, 1334, 1505
BmsI	GCATC	6 cut(s)	871, 1405, 2998, 3112, 3272, 3379
BpiI	GAAGAC	5 cut(s)	387, 435, 2091, 2344, 2445
BpmI	CTGGAG	4 cut(s)	236, 1227, 2297, 3260
BpuEI	CTTGAG	2 cut(s)	985, 2423
BpuMI	CCSGG	1 cut(s)	61
BsaBI	GATNNNNATC	1 cut(s)	1377
BsaI	GGTCTC	3 cut(s)	1367, 2245, 2963
BsaJI	CCNNGG	9 cut(s)	189, 510, 651, 1332, 1504, 2261, 2471, 3058, 3067
BsaWI	WCCGGW	2 cut(s)	1155, 1515
Bsc4I	CCNNNNNNNGG	6 cut(s)	13, 357, 1111, 1685, 1756, 1976
Bse118I	RCCGGY	1 cut(s)	1515
Bse21I	CCTNAGG	1 cut(s)	2346
Bse3DI	GCAATG	4 cut(s)	579, 749, 1483, 3258
Bse8I	GATNNNNATC	1 cut(s)	1377
BseBI	CCWGG	7 cut(s)	652, 828, 854, 1012, 1245, 1334, 1505
BseDI	CCNNGG	9 cut(s)	189, 510, 651, 1332, 1504, 2261, 2471, 3058, 3067
BseGI	GGATG	4 cut(s)	622, 1363, 2107, 3135
BseJI	GATNNNNATC	1 cut(s)	1377
BseLI	CCNNNNNNNGG	6 cut(s)	13, 357, 1111, 1685, 1756, 1976
BseMI	GCAATG	4 cut(s)	579, 749, 1483, 3258
BseMII	CTCAG	6 cut(s)	783, 1752, 2337, 2502, 2828, 2974
BseRI	GAGGAG	7 cut(s)	63, 275, 910, 1050, 1243, 1290, 2460
BseSI	GKGCMC	2 cut(s)	541, 1119
BseXI	GCAGC	7 cut(s)	94, 581, 1633, 2447, 2810, 2965, 2998
BseYI	CCCAGC	2 cut(s)	237, 270
Bsh1236I	CGCG	3 cut(s)	138, 267, 501
Bsh1285I	CGRYCG	1 cut(s)	1877
BshFI	GGCC	7 cut(s)	92, 1255, 1425, 2266, 2408, 3146, 3223
BshNI	GGYRCC	1 cut(s)	531
BshTI	ACCGGT	1 cut(s)	1515
BsiEI	CGRYCG	1 cut(s)	1877
BsiHKAI	GWGCWC	3 cut(s)	541, 1119, 2843
BsiHKCI	CYCGRG	1 cut(s)	743
BsiSI	CCGG	6 cut(s)	61, 422, 438, 1156, 1516, 3147
BslFI	GGGAC	6 cut(s)	112, 241, 254, 485, 500, 776
BslI	CCNNNNNNNGG	6 cut(s)	13, 357, 1111, 1685, 1756, 1976
BsmAI	GTCTC	8 cut(s)	38, 109, 1367, 1821, 2245, 2855, 2963, 3307
BsmBI	CGTCTC	2 cut(s)	109, 1821
BsmFI	GGGAC	6 cut(s)	112, 241, 254, 485, 500, 776
BsnI	GGCC	7 cut(s)	92, 1255, 1425, 2266, 2408, 3146, 3223
Bso31I	GGTCTC	3 cut(s)	1367, 2245, 2963
BsoBI	CYCGRG	1 cut(s)	743
Bsp1286I	GDGCHC	5 cut(s)	541, 744, 1119, 1243, 2843
Bsp1407I	TGTACA	3 cut(s)	48, 408, 2391
Bsp19I	CCATGG	3 cut(s)	189, 3058, 3067
Bsp68I	TCGCGA	1 cut(s)	501
BspACI	CCGC	9 cut(s)	259, 265, 280, 698, 1445, 1459, 1609, 2198, 2629
BspANI	GGCC	7 cut(s)	92, 1255, 1425, 2266, 2408, 3146, 3223
BspCNI	CTCAG	6 cut(s)	782, 1753, 2338, 2503, 2829, 2973
BspFNI	CGCG	3 cut(s)	138, 267, 501
BspHI	TCATGA	1 cut(s)	792
BspLI	GGNNCC	5 cut(s)	516, 533, 1242, 1263, 1800
BspPI	GGATC	6 cut(s)	1707, 1793, 1806, 1961, 1987, 3141
BspQI	GCTCTTC	1 cut(s)	958
BspT107I	GGYRCC	1 cut(s)	531
BspTI	CTTAAG	1 cut(s)	1714
BspTNI	GGTCTC	3 cut(s)	1367, 2245, 2963
BsrDI	GCAATG	4 cut(s)	579, 749, 1483, 3258
BsrFI	RCCGGY	1 cut(s)	1515
BsrGI	TGTACA	3 cut(s)	48, 408, 2391
BssAI	RCCGGY	1 cut(s)	1515
BssECI	CCNNGG	9 cut(s)	189, 510, 651, 1332, 1504, 2261, 2471, 3058, 3067
BssSI	CACGAG	2 cut(s)	1694, 2365
BssT1I	CCWWGG	5 cut(s)	189, 510, 2261, 3058, 3067
Bst2BI	CACGAG	2 cut(s)	1694, 2365
Bst2UI	CCWGG	7 cut(s)	652, 828, 854, 1012, 1245, 1334, 1505
Bst4CI	ACNGT	7 cut(s)	1097, 1627, 1669, 1675, 2075, 2119, 2247
Bst6I	CTCTTC	7 cut(s)	41, 170, 461, 597, 958, 2815, 2853
BstAFI	CTTAAG	1 cut(s)	1714
BstAUI	TGTACA	3 cut(s)	48, 408, 2391
BstC8I	GCNNGC	7 cut(s)	136, 721, 1203, 1394, 1474, 2478, 2482
BstDSI	CCRYGG	3 cut(s)	189, 3058, 3067
BstF5I	GGATG	4 cut(s)	622, 1363, 2107, 3135
BstFNI	CGCG	3 cut(s)	138, 267, 501
BstH2I	RGCGCY	1 cut(s)	277
BstHHI	GCGC	4 cut(s)	140, 269, 276, 2877
BstMAI	GTCTC	8 cut(s)	38, 109, 1367, 1821, 2245, 2855, 2963, 3307
BstMCI	CGRYCG	1 cut(s)	1877
BstMWI	GCNNNNNNNGC	6 cut(s)	273, 1247, 1295, 1415, 1539, 2460
BstNI	CCWGG	7 cut(s)	652, 828, 854, 1012, 1245, 1334, 1505
BstNSI	RCATGY	2 cut(s)	2446, 2659
BstSCI	CCNGG	8 cut(s)	59, 650, 826, 852, 1010, 1243, 1332, 1503
BstSFI	CTRYAG	2 cut(s)	352, 2115
BstSLI	GKGCMC	2 cut(s)	541, 1119
BstUI	CGCG	3 cut(s)	138, 267, 501
BstV1I	GCAGC	7 cut(s)	94, 581, 1633, 2447, 2810, 2965, 2998
BstV2I	GAAGAC	5 cut(s)	387, 435, 2091, 2344, 2445
BstX2I	RGATCY	7 cut(s)	1372, 1699, 1798, 1979, 2494, 3133, 3152
BstYI	RGATCY	7 cut(s)	1372, 1699, 1798, 1979, 2494, 3133, 3152
Bsu36I	CCTNAGG	1 cut(s)	2346
BsuI	GTATCC	3 cut(s)	1952, 2167, 2194
BsuRI	GGCC	7 cut(s)	92, 1255, 1425, 2266, 2408, 3146, 3223
BtgI	CCRYGG	3 cut(s)	189, 3058, 3067
BtsCI	GGATG	4 cut(s)	622, 1363, 2107, 3135
BtsI	GCAGTG	1 cut(s)	1583
BtsIMutI	CAGTG	6 cut(s)	1102, 1263, 1315, 1583, 1680, 1778
BtuMI	TCGCGA	1 cut(s)	501
Cac8I	GCNNGC	7 cut(s)	136, 721, 1203, 1394, 1474, 2478, 2482
CciI	TCATGA	1 cut(s)	792
CfoI	GCGC	4 cut(s)	140, 269, 276, 2877
Cfr10I	RCCGGY	1 cut(s)	1515
Cfr13I	GGNCC	6 cut(s)	375, 514, 1423, 2432, 3221, 3341
CpoI	CGGWCCG	1 cut(s)	375
CseI	GACGC	1 cut(s)	1838
Csp6I	GTAC	5 cut(s)	49, 409, 2392, 2662, 3038
CspAI	ACCGGT	1 cut(s)	1515
CspCI	CAANNNNNGTGG	2 cut(s)	1239, 1274
CspI	CGGWCCG	1 cut(s)	375
CviQI	GTAC	5 cut(s)	49, 409, 2392, 2662, 3038
DraI	TTTAAA	2 cut(s)	612, 2013
DrdI	GACNNNNNNGTC	1 cut(s)	326
DriI	GACNNNNNGTC	1 cut(s)	253
DseDI	GACNNNNNNGTC	1 cut(s)	326
EaeI	YGGCCR	2 cut(s)	90, 3144
Eam1104I	CTCTTC	7 cut(s)	41, 170, 461, 597, 958, 2815, 2853
Eam1105I	GACNNNNNGTC	1 cut(s)	253
EarI	CTCTTC	7 cut(s)	41, 170, 461, 597, 958, 2815, 2853
EciI	GGCGGA	2 cut(s)	1460, 1474
Eco130I	CCWWGG	5 cut(s)	189, 510, 2261, 3058, 3067
Eco147I	AGGCCT	2 cut(s)	2266, 2408
Eco24I	GRGCYC	2 cut(s)	744, 1243
Eco31I	GGTCTC	3 cut(s)	1367, 2245, 2963
Eco32I	GATATC	1 cut(s)	3294
Eco47I	GGWCC	4 cut(s)	375, 514, 2432, 3341
Eco57I	CTGAAG	5 cut(s)	501, 540, 907, 2435, 2457
Eco81I	CCTNAGG	1 cut(s)	2346
Eco88I	CYCGRG	1 cut(s)	743
EcoO109I	RGGNCCY	1 cut(s)	2432
EcoRI	GAATTC	1 cut(s)	1997
EcoRII	CCWGG	7 cut(s)	650, 826, 852, 1010, 1243, 1332, 1503
EcoRV	GATATC	1 cut(s)	3294
EcoT14I	CCWWGG	5 cut(s)	189, 510, 2261, 3058, 3067
EcoT22I	ATGCAT	1 cut(s)	1501
EcoT38I	GRGCYC	2 cut(s)	744, 1243
ErhI	CCWWGG	5 cut(s)	189, 510, 2261, 3058, 3067
Esp3I	CGTCTC	2 cut(s)	109, 1821
FalI	AAGNNNNNCTT	6 cut(s)	71, 103, 605, 637, 1185, 1217
FaqI	GGGAC	6 cut(s)	112, 241, 254, 485, 500, 776
FauI	CCCGC	2 cut(s)	266, 287
FauNDI	CATATG	1 cut(s)	2803
FbaI	TGATCA	1 cut(s)	3157
FblI	GTMKAC	1 cut(s)	339
Fnu4HI	GCNGC	7 cut(s)	83, 570, 1647, 2461, 2799, 2979, 3012
FokI	GGATG	4 cut(s)	629, 1370, 2114, 3142
FriOI	GRGCYC	2 cut(s)	744, 1243
Fsp4HI	GCNGC	7 cut(s)	83, 570, 1647, 2461, 2799, 2979, 3012
FspBI	CTAG	6 cut(s)	158, 1145, 2429, 2457, 2570, 2928
GlaI	GCGC	4 cut(s)	139, 268, 275, 2876
GluI	GCNGC	7 cut(s)	83, 570, 1647, 2461, 2799, 2979, 3012
GsaI	CCCAGC	2 cut(s)	241, 274
GsuI	CTGGAG	4 cut(s)	236, 1227, 2297, 3260
HaeII	RGCGCY	1 cut(s)	277
HaeIII	GGCC	7 cut(s)	92, 1255, 1425, 2266, 2408, 3146, 3223
HapII	CCGG	6 cut(s)	61, 422, 438, 1156, 1516, 3147
HgaI	GACGC	1 cut(s)	1838
HhaI	GCGC	4 cut(s)	140, 269, 276, 2877
Hin6I	GCGC	4 cut(s)	138, 267, 274, 2875
HinP1I	GCGC	4 cut(s)	138, 267, 274, 2875
HincII	GTYRAC	1 cut(s)	1135
HindII	GTYRAC	1 cut(s)	1135
HindIII	AAGCTT	2 cut(s)	1127, 3032
HpaII	CCGG	6 cut(s)	61, 422, 438, 1156, 1516, 3147
HphI	GGTGA	5 cut(s)	608, 1457, 2171, 2293, 3085
Hpy166II	GTNNAC	4 cut(s)	340, 539, 1117, 1135
Hpy8I	GTNNAC	4 cut(s)	340, 539, 1117, 1135
Hpy99I	CGWCG	8 cut(s)	224, 236, 302, 305, 308, 311, 314, 332
HpyCH4III	ACNGT	7 cut(s)	1097, 1627, 1669, 1675, 2075, 2119, 2247
HpyCH4IV	ACGT	3 cut(s)	312, 981, 3327
HpyF10VI	GCNNNNNNNGC	6 cut(s)	273, 1247, 1295, 1415, 1539, 2460
HpySE526I	ACGT	3 cut(s)	312, 981, 3327
HspAI	GCGC	4 cut(s)	138, 267, 274, 2875
Ksp22I	TGATCA	1 cut(s)	3157
LguI	GCTCTTC	1 cut(s)	958
LmnI	GCTCC	5 cut(s)	27, 117, 1246, 1267, 1303
Lsp1109I	GCAGC	7 cut(s)	94, 581, 1633, 2447, 2810, 2965, 2998
LweI	GCATC	6 cut(s)	871, 1405, 2998, 3112, 3272, 3379
MaeI	CTAG	6 cut(s)	158, 1145, 2429, 2457, 2570, 2928
MaeII	ACGT	3 cut(s)	312, 981, 3327
MaeIII	GTNAC	5 cut(s)	596, 1669, 2633, 2699, 2986
MflI	RGATCY	7 cut(s)	1372, 1699, 1798, 1979, 2494, 3133, 3152
MhlI	GDGCHC	5 cut(s)	541, 744, 1119, 1243, 2843
MlsI	TGGCCA	1 cut(s)	92
MluNI	TGGCCA	1 cut(s)	92
MlyI	GAGTC	6 cut(s)	3, 428, 467, 2081, 2461, 3251
MmeI	TCCRAC	5 cut(s)	80, 342, 872, 2151, 3295
Mox20I	TGGCCA	1 cut(s)	92
Mph1103I	ATGCAT	1 cut(s)	1501
MroXI	GAANNNNTTC	1 cut(s)	2537
MscI	TGGCCA	1 cut(s)	92
MslI	CAYNNNNRTG	3 cut(s)	867, 2682, 3006
Msp20I	TGGCCA	1 cut(s)	92
MspA1I	CMGCKG	1 cut(s)	2230
MspCI	CTTAAG	1 cut(s)	1714
MspI	CCGG	6 cut(s)	61, 422, 438, 1156, 1516, 3147
MspR9I	CCNGG	8 cut(s)	61, 652, 828, 854, 1012, 1245, 1334, 1505
MvaI	CCWGG	7 cut(s)	652, 828, 854, 1012, 1245, 1334, 1505
MvnI	CGCG	3 cut(s)	138, 267, 501
MwoI	GCNNNNNNNGC	6 cut(s)	273, 1247, 1295, 1415, 1539, 2460
NciI	CCSGG	1 cut(s)	61
NcoI	CCATGG	3 cut(s)	189, 3058, 3067
NdeI	CATATG	1 cut(s)	2803
NlaIV	GGNNCC	5 cut(s)	516, 533, 1242, 1263, 1800
NmeAIII	GCCGAG	1 cut(s)	2452
NmuCI	GTSAC	3 cut(s)	596, 2699, 2986
NruI	TCGCGA	1 cut(s)	501
NsiI	ATGCAT	1 cut(s)	1501
NspI	RCATGY	2 cut(s)	2446, 2659
OliI	CACNNNNGTG	1 cut(s)	2682
PagI	TCATGA	1 cut(s)	792
PceI	AGGCCT	2 cut(s)	2266, 2408
PciI	ACATGT	2 cut(s)	2442, 2655
PciSI	GCTCTTC	1 cut(s)	958
PcsI	WCGNNNNNNNCGW	9 cut(s)	192, 216, 228, 297, 303, 306, 309, 315, 1783
PdmI	GAANNNNTTC	1 cut(s)	2537
PflMI	CCANNNNNTGG	2 cut(s)	1111, 1685
PfoI	TCCNGGA	2 cut(s)	826, 852
PinAI	ACCGGT	1 cut(s)	1515
PkrI	GCNGC	7 cut(s)	84, 571, 1648, 2462, 2800, 2980, 3013
Ple19I	CGATCG	1 cut(s)	1877
PleI	GAGTC	6 cut(s)	3, 428, 467, 2081, 2461, 3250
PpsI	GAGTC	6 cut(s)	3, 428, 467, 2081, 2461, 3250
PpuMI	RGGWCCY	1 cut(s)	2432
PscI	ACATGT	2 cut(s)	2442, 2655
Psp5II	RGGWCCY	1 cut(s)	2432
Psp6I	CCWGG	7 cut(s)	650, 826, 852, 1010, 1243, 1332, 1503
PspFI	CCCAGC	2 cut(s)	237, 270
PspGI	CCWGG	7 cut(s)	650, 826, 852, 1010, 1243, 1332, 1503
PspN4I	GGNNCC	5 cut(s)	516, 533, 1242, 1263, 1800
PspPI	GGNCC	6 cut(s)	375, 514, 1423, 2432, 3221, 3341
PspPPI	RGGWCCY	1 cut(s)	2432
PsrI	GAACNNNNNNTAC	6 cut(s)	962, 994, 1711, 1743, 2817, 2849
PsuI	RGATCY	7 cut(s)	1372, 1699, 1798, 1979, 2494, 3133, 3152
PvuI	CGATCG	1 cut(s)	1877
PvuII	CAGCTG	1 cut(s)	2230
RgaI	GCGATCGC	1 cut(s)	1877
RruI	TCGCGA	1 cut(s)	501
RsaI	GTAC	5 cut(s)	50, 410, 2393, 2663, 3039
RsaNI	GTAC	5 cut(s)	49, 409, 2392, 2662, 3038
RseI	CAYNNNNRTG	3 cut(s)	867, 2682, 3006
Rsr2I	CGGWCCG	1 cut(s)	375
RsrII	CGGWCCG	1 cut(s)	375
SapI	GCTCTTC	1 cut(s)	958
SatI	GCNGC	7 cut(s)	83, 570, 1647, 2461, 2799, 2979, 3012
Sau96I	GGNCC	6 cut(s)	375, 514, 1423, 2432, 3221, 3341
SchI	GAGTC	6 cut(s)	3, 428, 467, 2081, 2461, 3251
ScrFI	CCNGG	8 cut(s)	61, 652, 828, 854, 1012, 1245, 1334, 1505
SduI	GDGCHC	5 cut(s)	541, 744, 1119, 1243, 2843
SfaAI	GCGATCGC	1 cut(s)	1877
SfaNI	GCATC	6 cut(s)	871, 1405, 2998, 3112, 3272, 3379
SfcI	CTRYAG	2 cut(s)	352, 2115
SgfI	GCGATCGC	1 cut(s)	1877
SinI	GGWCC	4 cut(s)	375, 514, 2432, 3341
SmiI	ATTTAAAT	1 cut(s)	2013
SmiMI	CAYNNNNRTG	3 cut(s)	867, 2682, 3006
SmlI	CTYRAG	3 cut(s)	1000, 1714, 2402
SmoI	CTYRAG	3 cut(s)	1000, 1714, 2402
SseBI	AGGCCT	2 cut(s)	2266, 2408
SsiI	CCGC	9 cut(s)	259, 265, 280, 698, 1445, 1459, 1609, 2198, 2629
SspI	AATATT	1 cut(s)	1454
SspMI	CTAG	6 cut(s)	158, 1145, 2429, 2457, 2570, 2928
StuI	AGGCCT	2 cut(s)	2266, 2408
StyD4I	CCNGG	8 cut(s)	59, 650, 826, 852, 1010, 1243, 1332, 1503
StyI	CCWWGG	5 cut(s)	189, 510, 2261, 3058, 3067
SwaI	ATTTAAAT	1 cut(s)	2013
TaaI	ACNGT	7 cut(s)	1097, 1627, 1669, 1675, 2075, 2119, 2247
TaiI	ACGT	3 cut(s)	315, 984, 3330
TaqI	TCGA	2 cut(s)	246, 330
TaqII	GACCGA	1 cut(s)	392
TatI	WGTACW	4 cut(s)	48, 408, 2391, 3037
TscAI	CASTG	6 cut(s)	1102, 1263, 1315, 1590, 1680, 1778
TseFI	GTSAC	3 cut(s)	596, 2699, 2986
TseI	GCWGC	7 cut(s)	82, 569, 1646, 2460, 2798, 2978, 3011
Tsp45I	GTSAC	3 cut(s)	596, 2699, 2986
TspGWI	ACGGA	2 cut(s)	14, 91
TspRI	CASTG	6 cut(s)	1102, 1263, 1315, 1590, 1680, 1778
Van91I	CCANNNNNTGG	2 cut(s)	1111, 1685
Vha464I	CTTAAG	1 cut(s)	1714
VneI	GTGCAC	2 cut(s)	537, 1115
VpaK11BI	GGWCC	4 cut(s)	375, 514, 2432, 3341
XapI	RAATTY	4 cut(s)	661, 1997, 2186, 3189
XceI	RCATGY	2 cut(s)	2446, 2659
XcmI	CCANNNNNNNNNTGG	2 cut(s)	756, 3065
XmiI	GTMKAC	1 cut(s)	339
XmnI	GAANNNNTTC	1 cut(s)	2537
XspI	CTAG	6 cut(s)	158, 1145, 2429, 2457, 2570, 2928
Zsp2I	ATGCAT	1 cut(s)	1501

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.