Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0006941

Physical Location & Seq

Genomic Coordinates Reverse (-)

12810439 .. 12811515

Gene Structure 1077 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0155400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1077 bp

ATGGATGCCCTATGTAACCATGAACTAGACCTAATCTTGAACTGGGTTAAGGACTCAGACGATAGAAAATCATTCTCTCAGGTCAGTAAGCGATTGTGGGCAGTGGAGCGTCTGAACCGATCATCCATTCGCCTTCTCGAACTCATTCGTCTCCCTCGATTACTTGATAGATTTCCAAACTTGGTCACATTCCAAACATCCCTGCCTCTAAGCAACGCTGACCTCGAATTATTAGCCCAAAGTTGTCCCAAACTAGAGGTCATCGACCTTGGAATACCGGCATTGTGCTTCAGAAAAATTGGGACCCAAGGTCTATGCACACTAGCAAATAGGTGTCCCAAGTTATCCAAGGTTTTGCTTCGTGGGAGGCATATGATGAGTGAGCATGATGTTGTGTCGTTCATACCTTTAGCGGATAACTTGAAGCACTTGGATTTGGGATACATTGTGTTCGTTTCTGACAAAACCCTTGAAGCAATTGGGTCCTCAAGTTGTCCGATTACCGTTTTGAACTTGGAAAGCTGTCGTATTACGGATTGTGGATTGAGATTTTTGACAAATGGGTCTTGCTCAAAAACCATAAAGGAATTGGTCCTTGCAAAGTGTCATAGAATCACTGATTCTGGGGTCTCGCTCTTGCAGAAGATGTGTGCCTTGGAGGAGCTAAATTTGGCTTATTGTCACCAAGTCACTGACGTTGGAGGTGTGGCAATCTCCGCAATTCGAACCCTCAAGAAACTGGACTTTGCTAGGGGACCCAAAGTGACAGATTGGGGACCCAGAGTGACAGACCGCACCATTCTTGCTCTCGCGGAGAATTGCCTCAACTTGGAGATGCTTAATTTGAGAGGTAATGGATACGTGACCGTAGTTGGTATTCGTGCATTTTTGGGTCACAAGTGCTTACAATCCCTTGATCTACGCTATATTCGGGTTTATGTTAGTGGATCTGATCTGGAAGACCTAACGCTTGCATGCCCGTCATTGATGTCTATACTAGTAGAGGGTGGATGGAGAAAAAGATTGATGGGTGAAATGCAAGAGAGCACTGTTAGCAGATTCGTGAGGTTCAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04137 map04137

Pfam Domains

Protein Families

UCH

Protein Analysis

358

Amino Acids

40.03

Weight (kDa)

8.69

Isoelectric Point (pI)

35.83

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF7885	PF25372	106 - 214	1.1e-09	Leucine Rich Repeat Domain of unknown function (DUF7885)
DUF7885	PF25372	227 - 324	5.8e-06	Leucine Rich Repeat Domain of unknown function (DUF7885)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006941)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g20680 FvH4_6g20680 FvH4_6g20680
malus_domestica	MD00G1072700.v1.1 MD12G1043100.v1.1 MD14G1042200.v1.1
prunus_persica	Prupe.7G091700_v2.0.a1 Prupe.7G091700_v2.0.a1 Prupe.7G091700_v2.0.a1 Prupe.7G091700_v2.0.a1
pyrus_communis	pycom12g03720 pycom14g03580
rosa_chinensis	RchiOBHm_Chr3g0476581
rosa_laevigata	RLG00000001984 RLG00000023761
rosa_multiflora	Rmu_sc0008241.1_g000007 Rmu_sc0020945.1_g000001
rosa_roxburghii	Rroxscaffold_6G00405190
rosa_rugosa	Rorug03G0155400
rosa_samantha	Rh3AG206000 Rh3BG238600 Rh3CG232300 Rh3DG232200 Rh7DG310400
rosa_wichuraiana	Rw3G018760 Rw7G026340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	562
AccII	CGCG	1 cut(s)	812
AciI	CCGC	4 cut(s)	413, 717, 793, 812
AclWI	GGATC	1 cut(s)	955
AcsI	RAATTY	1 cut(s)	667
AcuI	CTGAAG	1 cut(s)	274
AfiI	CCNNNNNNNGG	1 cut(s)	829
AgsI	TTSAA	5 cut(s)	40, 424, 473, 511, 1072
AhdI	GACNNNNNGTC	1 cut(s)	309
AhlI	ACTAGT	1 cut(s)	997
AloI	GAACNNNNNNTCC	2 cut(s)	107, 139
AluBI	AGCT	2 cut(s)	522, 664
AluI	AGCT	2 cut(s)	522, 664
Alw21I	GWGCWC	1 cut(s)	1049
Alw26I	GTCTC	2 cut(s)	155, 634
AlwI	GGATC	1 cut(s)	955
ApoI	RAATTY	1 cut(s)	667
ArsI	GACNNNNNNTTYG	2 cut(s)	243, 275
Asp700I	GAANNNNTTC	1 cut(s)	144
AspS9I	GGNCC	5 cut(s)	303, 483, 592, 755, 776
AsuHPI	GGTGA	2 cut(s)	674, 1043
AsuII	TTCGAA	1 cut(s)	724
AvaII	GGWCC	5 cut(s)	303, 483, 592, 755, 776
BbsI	GAAGAC	1 cut(s)	966
Bbv12I	GWGCWC	1 cut(s)	1049
BccI	CCATC	2 cut(s)	1005, 1021
BciVI	GTATCC	2 cut(s)	434, 851
BcoDI	GTCTC	2 cut(s)	155, 634
BcuI	ACTAGT	1 cut(s)	997
BfaI	CTAG	5 cut(s)	26, 254, 323, 750, 998
BfuI	GTATCC	2 cut(s)	434, 851
Bme18I	GGWCC	5 cut(s)	303, 483, 592, 755, 776
BmeRI	GACNNNNNGTC	1 cut(s)	309
BmgT120I	GGNCC	5 cut(s)	303, 483, 592, 755, 776
BmiI	GGNNCC	7 cut(s)	304, 305, 484, 756, 757, 777, 778
BmrI	ACTGGG	1 cut(s)	52
BmsI	GCATC	1 cut(s)	825
BmuI	ACTGGG	1 cut(s)	52
BpiI	GAAGAC	1 cut(s)	966
Bpu14I	TTCGAA	1 cut(s)	724
BpuEI	CTTGAG	2 cut(s)	472, 716
BsaAI	YACGTR	1 cut(s)	862
BsaI	GGTCTC	1 cut(s)	634
BsaJI	CCNNGG	4 cut(s)	268, 307, 348, 654
Bsc4I	CCNNNNNNNGG	1 cut(s)	829
Bse118I	RCCGGY	1 cut(s)	277
Bse1I	ACTGG	2 cut(s)	47, 744
BseDI	CCNNGG	4 cut(s)	268, 307, 348, 654
BseGI	GGATG	4 cut(s)	10, 122, 197, 1016
BseLI	CCNNNNNNNGG	1 cut(s)	829
BseMII	CTCAG	2 cut(s)	69, 92
BseNI	ACTGG	2 cut(s)	47, 744
BseRI	GAGGAG	1 cut(s)	674
Bsh1236I	CGCG	1 cut(s)	812
BsiHKAI	GWGCWC	1 cut(s)	1049
BsiSI	CCGG	1 cut(s)	278
BslFI	GGGAC	5 cut(s)	231, 316, 321, 768, 789
BslI	CCNNNNNNNGG	1 cut(s)	829
BsmAI	GTCTC	2 cut(s)	155, 634
BsmBI	CGTCTC	1 cut(s)	155
BsmFI	GGGAC	5 cut(s)	231, 316, 321, 768, 789
Bso31I	GGTCTC	1 cut(s)	634
Bsp119I	TTCGAA	1 cut(s)	724
Bsp1286I	GDGCHC	1 cut(s)	1049
Bsp143I	GATC	4 cut(s)	119, 916, 947, 952
BspACI	CCGC	4 cut(s)	413, 717, 793, 812
BspCNI	CTCAG	2 cut(s)	68, 91
BspFNI	CGCG	1 cut(s)	812
BspLI	GGNNCC	7 cut(s)	304, 305, 484, 756, 757, 777, 778
BspPI	GGATC	1 cut(s)	955
BspT104I	TTCGAA	1 cut(s)	724
BspTNI	GGTCTC	1 cut(s)	634
BsrFI	RCCGGY	1 cut(s)	277
BsrI	ACTGG	2 cut(s)	47, 744
BssAI	RCCGGY	1 cut(s)	277
BssECI	CCNNGG	4 cut(s)	268, 307, 348, 654
BssMI	GATC	4 cut(s)	119, 916, 947, 952
BssT1I	CCWWGG	4 cut(s)	268, 307, 348, 654
Bst4CI	ACNGT	3 cut(s)	505, 868, 1051
BstBAI	YACGTR	1 cut(s)	862
BstBI	TTCGAA	1 cut(s)	724
BstC8I	GCNNGC	2 cut(s)	972, 976
BstDEI	CTNAG	3 cut(s)	55, 78, 209
BstF5I	GGATG	4 cut(s)	10, 122, 197, 1016
BstFNI	CGCG	1 cut(s)	812
BstKTI	GATC	4 cut(s)	122, 919, 950, 955
BstMAI	GTCTC	2 cut(s)	155, 634
BstMBI	GATC	4 cut(s)	119, 916, 947, 952
BstMWI	GCNNNNNNNGC	2 cut(s)	716, 1053
BstNSI	RCATGY	1 cut(s)	978
BstUI	CGCG	1 cut(s)	812
BstV2I	GAAGAC	1 cut(s)	966
BstX2I	RGATCY	1 cut(s)	947
BstYI	RGATCY	1 cut(s)	947
BsuI	GTATCC	2 cut(s)	434, 851
BtsCI	GGATG	4 cut(s)	10, 122, 197, 1016
BtsI	GCAGTG	1 cut(s)	108
BtsIMutI	CAGTG	4 cut(s)	108, 615, 690, 1047
Cac8I	GCNNGC	2 cut(s)	972, 976
Cfr10I	RCCGGY	1 cut(s)	277
Cfr13I	GGNCC	5 cut(s)	303, 483, 592, 755, 776
CseI	GACGC	1 cut(s)	98
CviAII	CATG	3 cut(s)	20, 386, 975
CviJI	RGCY	4 cut(s)	236, 522, 664, 674
CviKI_1	RGCY	4 cut(s)	236, 522, 664, 674
DdeI	CTNAG	3 cut(s)	55, 78, 209
DpnI	GATC	4 cut(s)	121, 918, 949, 954
DpnII	GATC	4 cut(s)	119, 916, 947, 952
DrdI	GACNNNNNNGTC	1 cut(s)	562
DriI	GACNNNNNGTC	1 cut(s)	309
DseDI	GACNNNNNNGTC	1 cut(s)	562
Eam1105I	GACNNNNNGTC	1 cut(s)	309
Eco130I	CCWWGG	4 cut(s)	268, 307, 348, 654
Eco31I	GGTCTC	1 cut(s)	634
Eco47I	GGWCC	5 cut(s)	303, 483, 592, 755, 776
Eco57I	CTGAAG	1 cut(s)	274
EcoO109I	RGGNCCY	4 cut(s)	303, 483, 755, 776
EcoT14I	CCWWGG	4 cut(s)	268, 307, 348, 654
ErhI	CCWWGG	4 cut(s)	268, 307, 348, 654
Esp3I	CGTCTC	1 cut(s)	155
FaeI	CATG	3 cut(s)	23, 389, 978
FaqI	GGGAC	5 cut(s)	231, 316, 321, 768, 789
FatI	CATG	3 cut(s)	19, 385, 974
FauNDI	CATATG	1 cut(s)	372
FokI	GGATG	4 cut(s)	17, 109, 184, 1023
FspBI	CTAG	5 cut(s)	26, 254, 323, 750, 998
HapII	CCGG	1 cut(s)	278
HgaI	GACGC	1 cut(s)	98
Hin1II	CATG	3 cut(s)	23, 389, 978
HinfI	GANTC	4 cut(s)	53, 612, 620, 1059
HpaII	CCGG	1 cut(s)	278
HphI	GGTGA	2 cut(s)	674, 1043
Hpy188I	TCNGA	6 cut(s)	58, 114, 293, 460, 498, 952
Hpy188III	TCNNGA	5 cut(s)	37, 137, 733, 956, 1063
HpyAV	CCTTC	1 cut(s)	143
HpyCH4III	ACNGT	3 cut(s)	505, 868, 1051
HpyCH4IV	ACGT	2 cut(s)	696, 861
HpyCH4V	TGCA	6 cut(s)	318, 599, 640, 884, 974, 1039
HpyF10VI	GCNNNNNNNGC	2 cut(s)	716, 1053
HpyF3I	CTNAG	3 cut(s)	55, 78, 209
HpySE526I	ACGT	2 cut(s)	696, 861
Hsp92II	CATG	3 cut(s)	23, 389, 978
KflI	GGGWCCC	3 cut(s)	303, 755, 776
Kzo9I	GATC	4 cut(s)	119, 916, 947, 952
LmnI	GCTCC	2 cut(s)	106, 661
LpnPI	CCDG	8 cut(s)	28, 65, 215, 291, 609, 725, 793, 941
LweI	GCATC	1 cut(s)	825
MaeI	CTAG	5 cut(s)	26, 254, 323, 750, 998
MaeII	ACGT	2 cut(s)	696, 861
MaeIII	GTNAC	8 cut(s)	14, 184, 680, 688, 763, 784, 862, 893
MalI	GATC	4 cut(s)	121, 918, 949, 954
MboI	GATC	4 cut(s)	119, 916, 947, 952
MboII	GAAGA	2 cut(s)	655, 971
MfeI	CAATTG	1 cut(s)	477
MflI	RGATCY	1 cut(s)	947
MhlI	GDGCHC	1 cut(s)	1049
MluCI	AATT	9 cut(s)	227, 297, 477, 587, 667, 720, 817, 841, 1072
MlyI	GAGTC	1 cut(s)	47
MmeI	TCCRAC	1 cut(s)	679
MroXI	GAANNNNTTC	1 cut(s)	144
MseI	TTAA	2 cut(s)	48, 840
MspI	CCGG	1 cut(s)	278
MunI	CAATTG	1 cut(s)	477
MvnI	CGCG	1 cut(s)	812
MwoI	GCNNNNNNNGC	2 cut(s)	716, 1053
NdeI	CATATG	1 cut(s)	372
NdeII	GATC	4 cut(s)	119, 916, 947, 952
NlaIII	CATG	3 cut(s)	23, 389, 978
NlaIV	GGNNCC	7 cut(s)	304, 305, 484, 756, 757, 777, 778
NmuCI	GTSAC	7 cut(s)	184, 680, 688, 763, 784, 862, 893
NspI	RCATGY	1 cut(s)	978
NspV	TTCGAA	1 cut(s)	724
PaeI	GCATGC	1 cut(s)	978
PcsI	WCGNNNNNNNCGW	2 cut(s)	154, 222
PdmI	GAANNNNTTC	1 cut(s)	144
PfeI	GAWTC	3 cut(s)	612, 620, 1059
PleI	GAGTC	1 cut(s)	47
PpsI	GAGTC	1 cut(s)	47
Ppu21I	YACGTR	1 cut(s)	862
PpuMI	RGGWCCY	4 cut(s)	303, 483, 755, 776
Psp5II	RGGWCCY	4 cut(s)	303, 483, 755, 776
PspN4I	GGNNCC	7 cut(s)	304, 305, 484, 756, 757, 777, 778
PspPI	GGNCC	5 cut(s)	303, 483, 592, 755, 776
PspPPI	RGGWCCY	4 cut(s)	303, 483, 755, 776
PsuI	RGATCY	1 cut(s)	947
SaqAI	TTAA	2 cut(s)	48, 840
Sau3AI	GATC	4 cut(s)	119, 916, 947, 952
Sau96I	GGNCC	5 cut(s)	303, 483, 592, 755, 776
SchI	GAGTC	1 cut(s)	47
SduI	GDGCHC	1 cut(s)	1049
SfaNI	GCATC	1 cut(s)	825
SfuI	TTCGAA	1 cut(s)	724
SinI	GGWCC	5 cut(s)	303, 483, 592, 755, 776
SmlI	CTYRAG	2 cut(s)	487, 731
SmoI	CTYRAG	2 cut(s)	487, 731
SpeI	ACTAGT	1 cut(s)	997
SphI	GCATGC	1 cut(s)	978
Sse9I	AATT	9 cut(s)	227, 297, 477, 587, 667, 720, 817, 841, 1072
SsiI	CCGC	4 cut(s)	413, 717, 793, 812
SspMI	CTAG	5 cut(s)	26, 254, 323, 750, 998
StyI	CCWWGG	4 cut(s)	268, 307, 348, 654
TaaI	ACNGT	3 cut(s)	505, 868, 1051
TaiI	ACGT	2 cut(s)	699, 864
TaqI	TCGA	5 cut(s)	138, 157, 225, 264, 724
TasI	AATT	9 cut(s)	227, 297, 477, 587, 667, 720, 817, 841, 1072
TfiI	GAWTC	3 cut(s)	612, 620, 1059
Tru1I	TTAA	2 cut(s)	48, 840
Tru9I	TTAA	2 cut(s)	48, 840
TscAI	CASTG	4 cut(s)	108, 622, 697, 1054
TseFI	GTSAC	7 cut(s)	184, 680, 688, 763, 784, 862, 893
Tsp45I	GTSAC	7 cut(s)	184, 680, 688, 763, 784, 862, 893
TspDTI	ATGAA	2 cut(s)	36, 391
TspGWI	ACGGA	1 cut(s)	548
TspRI	CASTG	4 cut(s)	108, 622, 697, 1054
VpaK11BI	GGWCC	5 cut(s)	303, 483, 592, 755, 776
XapI	RAATTY	1 cut(s)	667
XceI	RCATGY	1 cut(s)	978
XcmI	CCANNNNNNNNNTGG	1 cut(s)	586
XmnI	GAANNNNTTC	1 cut(s)	144
XspI	CTAG	5 cut(s)	26, 254, 323, 750, 998

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.