Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3B

Orthogroup ID

OG0006941

Physical Location & Seq

Genomic Coordinates Forward (+)

22457108 .. 22465260

Gene Structure 8153 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3BG238600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2841 bp

ATGACCCAACTCTCGGAAAAGCTCCGTCTGTGTGTCTTCCTTCTTCTGTACAATCCAACCCGGTTTCTCTCTCCTCCTAAGCAGCTCTTGGCCACTCTCTCCGTCTCCACGCTCCACCTCTGCAAGTCCCTCGCACGCGCCCTCGCCTCCAAAACCCTAGCCCTCTTCTTCTTCTTCTTCTTCTTCTTCGCCATGGACGACCCCTTCCCCTTCGCCTCTGCCGACGGCGACAACGACGGCTGGGACTTCGACCTCCAGTCCCGCAACCGCGCCCAGCGCCCCCGCCTCCTCCACGACTACGACGACGACGACGACGTTTCCGACAATGCCGTCGATAAGGTCTACCTCGTTCCCTACAGGTGGTGGAAGGAGGTTCGGACCGAAGACTATGATCGTGGCGAAGGGGTATTGTACAGCACTTCGCCGGAGGAAGACGACTCCGGCTCGGAAATTGTGTTGAGTTTGAGGAAGAGGGACTCTGCAGAAGAAGGGTTTTCAGGTCGCGAGTATGCCTTGGTCCCTGAAGCGACATGGTGCCGCGCACTCATACGGCATTATGATTTTAATACAGCAGCAATGGATAATGTGAGCTTCTTTGGTGACGAAGAGTTTTTAAAGGATGTCTTTTCTTTACAAATTAGGCTCTTTGTTTCCTGGGAAACAAATTCATTGGTTGTAAAGATCAGCCAAAAGGATAATGCGGTTGATTCTTTCAAGAGAGCCTGCATTATTTTCAGTTCAGAGCCTGAGCCATTGCATATTTGGGACTTCTCAGGGCAGACAACCCAATTTTTCATGAATGACAGAATTAGTTTGCCAAATGACATTCCTGGACAACTGAACAAAGAGATTGTCCTGGAATTGCATCTTCATGGATTTTCAGAGGTCAGAGGTTGGAGGAGTGATGACATGGCTGAAAACCACTTCAGTATTGATGGTTGTATTAGTGGTGGCTCTTCTAAAATGAATGGGAACATTTACTACGTCAATCCCTACTTAAACTCAAGCAACTCCTGGCGAAGTGCTGTTATGTATAGAGGAGTTGGTTCTTTAGGCTTAACTGGTATAAAGAATCTTGGGAATACTTGTTTTATGAACAGTGCAATCCAATGTTTGGTGCACACTCCAAAGCTTGTTGACTATTTTCTAGGAGATTACCGGAAGGACATGAACTATCAGAACCCATTGGGAATGAAAGGAGAGCTTGCTTTTGCATTTGGAGAATTATTGAGGAGATTATGGGCTCCGGGTGCAAGGCCAGTGGCTCCAAGAATGTTCAAGCAAAAACTTGCCAGTTTTGCTCCTCAATTCAGTGGCTATAATCAACATGATTCCCAGGAACTCCTTGCTTTTTTGCTGGATGGTCTCCATGAAGATCTAAATCGTGTGAAATGCAAGCCATATTTTGAAGCTAAAGATGCAGAGGGCCGTCCAGATGAAGAAGTGGCGGAAGAATATTGGCGGAATCACCTTGCTCGCAATGATTCCATTATTGTTAATGCATACCAGGGTCAATACCGGTCAAAATTGGTTTGCCCCGATTGCAACAAGGTGTCCATTACATTTGACCCATTTATGTATCTATCACTGCCATTACCTTCTACAACAATGCGGAGTATGACTTTGACGGTTTTAAGCACAGATGGTGCTGCGTTGCCTACTACATTTACTGTAACAGTGCCAAAGAGTGGGAAGCTCGTGGATCTTACTGAAGCCTTAAGTATTGCCTGTTCTCTAAGAGATGATGAAACCCTGTTGGTGGCTGAGATATACCAGTGTCGCATATTTCGTCTATTGGAGGATCCATCTGATTCATTAGCCTTTGTTAGAGACGCTGACAAACTGGTTGCTTATCGCTTACCAAAAGATTTTGAGCGATCACACTTGGTTGTGTTTCTTCATCAGGAGAAGGGAAAGTATTACTATAATCAAGACACAATTGGTATCCCACTTTTAGCAAGGGTGTCTGATCCTTGTTATGGATCTGATATTCGCAACGAATTCCTAAATAATTTAAATCCATTCTTGAAGCCTGATGGAGATATATCAGATGTTTTTGATGATGATTCTAGAAACTGTGCTAATGAAAACTCTAACAAGGAGGATGACAGTAGTCCTACAGTTTGGGATAATGATTCTGACACAGACAGGGGAACAATGGGTGAAGTGCTGTTGGATACTGACTTCAAATTTTACTTAGCAGATACAAGAAAGGAAATAGAGTTGAATCAGCTGATAGAGGTCTCACGGTTGCCTGTGATACCAAGGCCTAAGATACTGGAGGTGATTGTTTTATGGACAGATGAGATGATTAACAAGTATGATACACGCCTTCTAAACTCTTTGCCAGAGGTCTTCAACATTTTCACGAGTAGTGAAGAATCTGTTTCCCTGTACAAATGCCTTGAGGCCTTTCTGAAGGAAGAACCTCTAGGACCTGAAGACATGTGGTTCTGCCCTAGCTGCAAGACTCCTCGGCAAGCCAGCAAAAAGTTAGATCTTTGGAGATTGCCTGAGATATTGGTTATTCATCTGAAAAGATTCTCGTATGACCATTATTTTAAGAACAAGCTAGAAACATTAGTTGATTTTCCCATTTATGATATGGACATCTCAACATACATTACCCACCGCAGTAACCAGTTATCCAGTCGATACATGTTGTACGCAATCAGTAATCACTATGGTGGCTTGGGTGGTGGTCACTATACGGCATTTGTTCATCTCGGTAAGGGCTCATGGTATGAGTTTGACGATGACAGAGTTTCTGCTGTTAATGTGGAGAGGATTAAGACTTCGGCAGCATATGTTCTTTTCTACCGAAGAGTACCAGATGTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04137 map04137

Pfam Domains

Protein Families

UCH

Protein Analysis

946

Amino Acids

108.48

Weight (kDa)

5.04

Isoelectric Point (pI)

41.95

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ubiquitin_UBP8	PF25242	213 - 267	1.5e-30	UBP8-like, ubiquitin-like domain
UCH	PF00443	354 - 940	1.7e-73	Ubiquitin carboxyl-terminal hydrolase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006941)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g20680 FvH4_6g20680 FvH4_6g20680
malus_domestica	MD00G1072700.v1.1 MD12G1043100.v1.1 MD14G1042200.v1.1
prunus_persica	Prupe.7G091700_v2.0.a1 Prupe.7G091700_v2.0.a1 Prupe.7G091700_v2.0.a1 Prupe.7G091700_v2.0.a1
pyrus_communis	pycom12g03720 pycom14g03580
rosa_chinensis	RchiOBHm_Chr3g0476581
rosa_laevigata	RLG00000001984 RLG00000023761
rosa_multiflora	Rmu_sc0008241.1_g000007 Rmu_sc0020945.1_g000001
rosa_roxburghii	Rroxscaffold_6G00405190
rosa_rugosa	Rorug03G0155400
rosa_samantha	Rh3AG206000 Rh3BG238600 Rh3CG232300 Rh3DG232200 Rh7DG310400
rosa_wichuraiana	Rw3G018760 Rw7G026340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	329
AccB1I	GGYRCC	1 cut(s)	534
AccB7I	CCANNNNNTGG	2 cut(s)	1114, 1688
AccI	GTMKAC	1 cut(s)	342
AccII	CGCG	4 cut(s)	138, 270, 504, 540
AciI	CCGC	9 cut(s)	262, 268, 283, 538, 701, 1448, 1462, 1612, 2632
AclWI	GGATC	5 cut(s)	1710, 1796, 1809, 1964, 1990
AcoI	YGGCCR	1 cut(s)	90
AcsI	RAATTY	3 cut(s)	664, 2000, 2189
AcuI	CTGAAG	5 cut(s)	543, 910, 1731, 2438, 2460
AfaI	GTAC	5 cut(s)	50, 413, 2396, 2666, 2829
AfiI	CCNNNNNNNGG	6 cut(s)	13, 360, 1114, 1688, 1759, 1979
AflII	CTTAAG	1 cut(s)	1717
AflIII	ACRYGT	2 cut(s)	2445, 2658
AgeI	ACCGGT	1 cut(s)	1518
AgsI	TTSAA	7 cut(s)	715, 1279, 1409, 2029, 2188, 2227, 2359
AhdI	GACNNNNNGTC	1 cut(s)	256
AjnI	CCWGG	6 cut(s)	653, 829, 855, 1013, 1335, 1506
AleI	CACNNNNGTG	1 cut(s)	2685
Alw21I	GWGCWC	1 cut(s)	1122
Alw26I	GTCTC	4 cut(s)	109, 1370, 1824, 2248
Alw44I	GTGCAC	1 cut(s)	1118
AlwI	GGATC	5 cut(s)	1710, 1796, 1809, 1964, 1990
AlwNI	CAGNNNCTG	1 cut(s)	746
AoxI	GGCC	5 cut(s)	90, 1256, 1426, 2267, 2409
ApaLI	GTGCAC	1 cut(s)	1118
ApeKI	GCWGC	5 cut(s)	82, 572, 1649, 2463, 2801
ApoI	RAATTY	3 cut(s)	664, 2000, 2189
ArsI	GACNNNNNNTTYG	2 cut(s)	837, 869
AsiGI	ACCGGT	1 cut(s)	1518
Asp700I	GAANNNNTTC	1 cut(s)	2540
AspLEI	GCGC	4 cut(s)	140, 272, 279, 542
AspS9I	GGNCC	4 cut(s)	378, 517, 1426, 2435
AsuC2I	CCSGG	2 cut(s)	61, 1248
AsuHPI	GGTGA	4 cut(s)	611, 1460, 2174, 2296
AvaII	GGWCC	3 cut(s)	378, 517, 2435
BaeGI	GKGCMC	1 cut(s)	1122
BalI	TGGCCA	1 cut(s)	92
BamHI	GGATCC	1 cut(s)	1801
BanI	GGYRCC	1 cut(s)	534
BanII	GRGCYC	2 cut(s)	1246, 2738
BauI	CACGAG	2 cut(s)	1697, 2368
BbsI	GAAGAC	5 cut(s)	28, 390, 438, 2347, 2448
Bbv12I	GWGCWC	1 cut(s)	1122
BbvI	GCAGC	5 cut(s)	94, 584, 1636, 2450, 2813
BccI	CCATC	5 cut(s)	929, 1355, 1637, 1813, 2030
BceAI	ACGGC	6 cut(s)	241, 253, 314, 566, 1413, 2727
BcgI	CGANNNNNNTGC	2 cut(s)	112, 146
BciT130I	CCWGG	6 cut(s)	655, 831, 857, 1015, 1337, 1508
BciVI	GTATCC	2 cut(s)	1955, 2170
BcnI	CCSGG	2 cut(s)	61, 1248
BcoDI	GTCTC	4 cut(s)	109, 1370, 1824, 2248
BfaI	CTAG	6 cut(s)	158, 1148, 2070, 2432, 2460, 2573
BfmI	CTRYAG	3 cut(s)	355, 480, 2118
BfoI	RGCGCY	1 cut(s)	280
BfrI	CTTAAG	1 cut(s)	1717
BfuI	GTATCC	2 cut(s)	1955, 2170
BglII	AGATCT	2 cut(s)	1375, 2497
BisI	GCNGC	6 cut(s)	83, 538, 573, 1650, 2464, 2802
BlsI	GCNGC	6 cut(s)	84, 539, 574, 1651, 2465, 2803
Bme1390I	CCNGG	8 cut(s)	61, 655, 831, 857, 1015, 1248, 1337, 1508
Bme18I	GGWCC	3 cut(s)	378, 517, 2435
BmeRI	GACNNNNNGTC	1 cut(s)	256
BmgT120I	GGNCC	4 cut(s)	378, 517, 1426, 2435
BmiI	GGNNCC	5 cut(s)	519, 536, 1245, 1266, 1803
BmrFI	CCNGG	8 cut(s)	61, 655, 831, 857, 1015, 1248, 1337, 1508
BmsI	GCATC	2 cut(s)	874, 1408
BoxI	GACNNNNGTC	1 cut(s)	2112
BpiI	GAAGAC	5 cut(s)	28, 390, 438, 2347, 2448
BpmI	CTGGAG	2 cut(s)	239, 2300
Bpu10I	CCTNAGC	2 cut(s)	78, 747
BpuEI	CTTGAG	2 cut(s)	988, 2426
BpuMI	CCSGG	2 cut(s)	61, 1248
BsaBI	GATNNNNATC	1 cut(s)	1380
BsaI	GGTCTC	2 cut(s)	1370, 2248
BsaJI	CCNNGG	7 cut(s)	192, 513, 654, 1335, 1507, 2264, 2474
BsaWI	WCCGGW	2 cut(s)	1158, 1518
Bsc4I	CCNNNNNNNGG	6 cut(s)	13, 360, 1114, 1688, 1759, 1979
Bse118I	RCCGGY	1 cut(s)	1518
Bse1I	ACTGG	9 cut(s)	256, 1066, 1259, 1293, 1774, 1848, 2283, 2641, 2649
Bse3DI	GCAATG	3 cut(s)	582, 752, 1486
Bse8I	GATNNNNATC	1 cut(s)	1380
BseBI	CCWGG	6 cut(s)	655, 831, 857, 1015, 1337, 1508
BseDI	CCNNGG	7 cut(s)	192, 513, 654, 1335, 1507, 2264, 2474
BseGI	GGATG	3 cut(s)	625, 1366, 2110
BseJI	GATNNNNATC	1 cut(s)	1380
BseLI	CCNNNNNNNGG	6 cut(s)	13, 360, 1114, 1688, 1759, 1979
BseMI	GCAATG	3 cut(s)	582, 752, 1486
BseMII	CTCAG	4 cut(s)	738, 786, 1755, 2505
BseNI	ACTGG	9 cut(s)	256, 1066, 1259, 1293, 1774, 1848, 2283, 2641, 2649
BseRI	GAGGAG	7 cut(s)	63, 278, 913, 1053, 1246, 1293, 2463
BseSI	GKGCMC	1 cut(s)	1122
BseXI	GCAGC	5 cut(s)	94, 584, 1636, 2450, 2813
BseYI	CCCAGC	2 cut(s)	240, 273
Bsh1236I	CGCG	4 cut(s)	138, 270, 504, 540
BshFI	GGCC	5 cut(s)	92, 1258, 1428, 2269, 2411
BshNI	GGYRCC	1 cut(s)	534
BshTI	ACCGGT	1 cut(s)	1518
BsiHKAI	GWGCWC	1 cut(s)	1122
BsiSI	CCGG	6 cut(s)	61, 425, 441, 1159, 1247, 1519
BslFI	GGGAC	6 cut(s)	112, 244, 257, 488, 503, 779
BslI	CCNNNNNNNGG	6 cut(s)	13, 360, 1114, 1688, 1759, 1979
BsmAI	GTCTC	4 cut(s)	109, 1370, 1824, 2248
BsmBI	CGTCTC	2 cut(s)	109, 1824
BsmFI	GGGAC	6 cut(s)	112, 244, 257, 488, 503, 779
BsnI	GGCC	5 cut(s)	92, 1258, 1428, 2269, 2411
Bso31I	GGTCTC	2 cut(s)	1370, 2248
Bsp1286I	GDGCHC	3 cut(s)	1122, 1246, 2738
Bsp1407I	TGTACA	3 cut(s)	48, 411, 2394
Bsp143I	GATC	9 cut(s)	391, 681, 1375, 1702, 1801, 1877, 1969, 1982, 2497
Bsp19I	CCATGG	1 cut(s)	192
Bsp68I	TCGCGA	1 cut(s)	504
BspACI	CCGC	9 cut(s)	262, 268, 283, 538, 701, 1448, 1462, 1612, 2632
BspANI	GGCC	5 cut(s)	92, 1258, 1428, 2269, 2411
BspCNI	CTCAG	4 cut(s)	739, 785, 1756, 2506
BspFNI	CGCG	4 cut(s)	138, 270, 504, 540
BspHI	TCATGA	1 cut(s)	795
BspLI	GGNNCC	5 cut(s)	519, 536, 1245, 1266, 1803
BspMAI	CTGCAG	1 cut(s)	484
BspPI	GGATC	5 cut(s)	1710, 1796, 1809, 1964, 1990
BspQI	GCTCTTC	1 cut(s)	961
BspT107I	GGYRCC	1 cut(s)	534
BspTI	CTTAAG	1 cut(s)	1717
BspTNI	GGTCTC	2 cut(s)	1370, 2248
BsrDI	GCAATG	3 cut(s)	582, 752, 1486
BsrFI	RCCGGY	1 cut(s)	1518
BsrGI	TGTACA	3 cut(s)	48, 411, 2394
BsrI	ACTGG	9 cut(s)	256, 1066, 1259, 1293, 1774, 1848, 2283, 2641, 2649
BssAI	RCCGGY	1 cut(s)	1518
BssECI	CCNNGG	7 cut(s)	192, 513, 654, 1335, 1507, 2264, 2474
BssMI	GATC	9 cut(s)	391, 681, 1375, 1702, 1801, 1877, 1969, 1982, 2497
BssSI	CACGAG	2 cut(s)	1697, 2368
BssT1I	CCWWGG	3 cut(s)	192, 513, 2264
Bst2BI	CACGAG	2 cut(s)	1697, 2368
Bst2UI	CCWGG	6 cut(s)	655, 831, 857, 1015, 1337, 1508
Bst4CI	ACNGT	8 cut(s)	1100, 1630, 1672, 1678, 2078, 2111, 2122, 2250
Bst6I	CTCTTC	5 cut(s)	170, 464, 600, 961, 2818
BstAFI	CTTAAG	1 cut(s)	1717
BstAUI	TGTACA	3 cut(s)	48, 411, 2394
BstC8I	GCNNGC	7 cut(s)	136, 724, 1206, 1397, 1477, 2481, 2485
BstDEI	CTNAG	8 cut(s)	78, 747, 772, 1736, 1764, 2197, 2271, 2514
BstDSI	CCRYGG	1 cut(s)	192
BstF5I	GGATG	3 cut(s)	625, 1366, 2110
BstFNI	CGCG	4 cut(s)	138, 270, 504, 540
BstH2I	RGCGCY	1 cut(s)	280
BstHHI	GCGC	4 cut(s)	140, 272, 279, 542
BstKTI	GATC	9 cut(s)	394, 684, 1378, 1705, 1804, 1880, 1972, 1985, 2500
BstMAI	GTCTC	4 cut(s)	109, 1370, 1824, 2248
BstMBI	GATC	9 cut(s)	391, 681, 1375, 1702, 1801, 1877, 1969, 1982, 2497
BstMWI	GCNNNNNNNGC	6 cut(s)	276, 1250, 1298, 1418, 1542, 2463
BstNI	CCWGG	6 cut(s)	655, 831, 857, 1015, 1337, 1508
BstNSI	RCATGY	2 cut(s)	2449, 2662
BstPAI	GACNNNNGTC	1 cut(s)	2112
BstSCI	CCNGG	8 cut(s)	59, 653, 829, 855, 1013, 1246, 1335, 1506
BstSFI	CTRYAG	3 cut(s)	355, 480, 2118
BstSLI	GKGCMC	1 cut(s)	1122
BstUI	CGCG	4 cut(s)	138, 270, 504, 540
BstV1I	GCAGC	5 cut(s)	94, 584, 1636, 2450, 2813
BstV2I	GAAGAC	5 cut(s)	28, 390, 438, 2347, 2448
BstX2I	RGATCY	5 cut(s)	1375, 1702, 1801, 1982, 2497
BstYI	RGATCY	5 cut(s)	1375, 1702, 1801, 1982, 2497
BsuI	GTATCC	2 cut(s)	1955, 2170
BsuRI	GGCC	5 cut(s)	92, 1258, 1428, 2269, 2411
BtgI	CCRYGG	1 cut(s)	192
BtsCI	GGATG	3 cut(s)	625, 1366, 2110
BtsI	GCAGTG	1 cut(s)	1586
BtsIMutI	CAGTG	6 cut(s)	1105, 1266, 1318, 1586, 1683, 1781
BtuMI	TCGCGA	1 cut(s)	504
Cac8I	GCNNGC	7 cut(s)	136, 724, 1206, 1397, 1477, 2481, 2485
CaiI	CAGNNNCTG	1 cut(s)	746
CciI	TCATGA	1 cut(s)	795
CfoI	GCGC	4 cut(s)	140, 272, 279, 542
Cfr10I	RCCGGY	1 cut(s)	1518
Cfr13I	GGNCC	4 cut(s)	378, 517, 1426, 2435
CpoI	CGGWCCG	1 cut(s)	378
CseI	GACGC	1 cut(s)	1841
Csp6I	GTAC	5 cut(s)	49, 412, 2395, 2665, 2828
CspAI	ACCGGT	1 cut(s)	1518
CspCI	CAANNNNNGTGG	2 cut(s)	1242, 1277
CspI	CGGWCCG	1 cut(s)	378
CviQI	GTAC	5 cut(s)	49, 412, 2395, 2665, 2828
DdeI	CTNAG	8 cut(s)	78, 747, 772, 1736, 1764, 2197, 2271, 2514
DpnI	GATC	9 cut(s)	393, 683, 1377, 1704, 1803, 1879, 1971, 1984, 2499
DpnII	GATC	9 cut(s)	391, 681, 1375, 1702, 1801, 1877, 1969, 1982, 2497
DraI	TTTAAA	2 cut(s)	615, 2016
DrdI	GACNNNNNNGTC	1 cut(s)	329
DriI	GACNNNNNGTC	1 cut(s)	256
DseDI	GACNNNNNNGTC	1 cut(s)	329
EaeI	YGGCCR	1 cut(s)	90
Eam1104I	CTCTTC	5 cut(s)	170, 464, 600, 961, 2818
Eam1105I	GACNNNNNGTC	1 cut(s)	256
EarI	CTCTTC	5 cut(s)	170, 464, 600, 961, 2818
EciI	GGCGGA	2 cut(s)	1463, 1477
Eco130I	CCWWGG	3 cut(s)	192, 513, 2264
Eco147I	AGGCCT	2 cut(s)	2269, 2411
Eco24I	GRGCYC	2 cut(s)	1246, 2738
Eco31I	GGTCTC	2 cut(s)	1370, 2248
Eco47I	GGWCC	3 cut(s)	378, 517, 2435
Eco57I	CTGAAG	5 cut(s)	543, 910, 1731, 2438, 2460
EcoO109I	RGGNCCY	1 cut(s)	2435
EcoRI	GAATTC	1 cut(s)	2000
EcoRII	CCWGG	6 cut(s)	653, 829, 855, 1013, 1335, 1506
EcoT14I	CCWWGG	3 cut(s)	192, 513, 2264
EcoT22I	ATGCAT	1 cut(s)	1504
EcoT38I	GRGCYC	2 cut(s)	1246, 2738
ErhI	CCWWGG	3 cut(s)	192, 513, 2264
Esp3I	CGTCTC	2 cut(s)	109, 1824
FalI	AAGNNNNNCTT	6 cut(s)	71, 103, 608, 640, 1188, 1220
FaqI	GGGAC	6 cut(s)	112, 244, 257, 488, 503, 779
FauI	CCCGC	2 cut(s)	269, 290
FauNDI	CATATG	1 cut(s)	2806
FblI	GTMKAC	1 cut(s)	342
Fnu4HI	GCNGC	6 cut(s)	83, 538, 573, 1650, 2464, 2802
FokI	GGATG	3 cut(s)	632, 1373, 2117
FriOI	GRGCYC	2 cut(s)	1246, 2738
Fsp4HI	GCNGC	6 cut(s)	83, 538, 573, 1650, 2464, 2802
FspBI	CTAG	6 cut(s)	158, 1148, 2070, 2432, 2460, 2573
GlaI	GCGC	4 cut(s)	139, 271, 278, 541
GluI	GCNGC	6 cut(s)	83, 538, 573, 1650, 2464, 2802
GsaI	CCCAGC	2 cut(s)	244, 277
GsuI	CTGGAG	2 cut(s)	239, 2300
HaeII	RGCGCY	1 cut(s)	280
HaeIII	GGCC	5 cut(s)	92, 1258, 1428, 2269, 2411
HapII	CCGG	6 cut(s)	61, 425, 441, 1159, 1247, 1519
HgaI	GACGC	1 cut(s)	1841
HhaI	GCGC	4 cut(s)	140, 272, 279, 542
Hin6I	GCGC	4 cut(s)	138, 270, 277, 540
HinP1I	GCGC	4 cut(s)	138, 270, 277, 540
HincII	GTYRAC	1 cut(s)	1138
HindII	GTYRAC	1 cut(s)	1138
HindIII	AAGCTT	1 cut(s)	1130
HpaII	CCGG	6 cut(s)	61, 425, 441, 1159, 1247, 1519
HphI	GGTGA	4 cut(s)	611, 1460, 2174, 2296
Hpy166II	GTNNAC	3 cut(s)	343, 1120, 1138
Hpy188III	TCNNGA	9 cut(s)	503, 715, 796, 1433, 1904, 1931, 2026, 2070, 2368
Hpy8I	GTNNAC	3 cut(s)	343, 1120, 1138
Hpy99I	CGWCG	8 cut(s)	227, 239, 305, 308, 311, 314, 317, 335
HpyCH4III	ACNGT	8 cut(s)	1100, 1630, 1672, 1678, 2078, 2111, 2122, 2250
HpyCH4IV	ACGT	2 cut(s)	315, 984
HpyF10VI	GCNNNNNNNGC	6 cut(s)	276, 1250, 1298, 1418, 1542, 2463
HpyF3I	CTNAG	8 cut(s)	78, 747, 772, 1736, 1764, 2197, 2271, 2514
HpySE526I	ACGT	2 cut(s)	315, 984
HspAI	GCGC	4 cut(s)	138, 270, 277, 540
Kzo9I	GATC	9 cut(s)	391, 681, 1375, 1702, 1801, 1877, 1969, 1982, 2497
LguI	GCTCTTC	1 cut(s)	961
LmnI	GCTCC	5 cut(s)	27, 117, 1249, 1270, 1306
Lsp1109I	GCAGC	5 cut(s)	94, 584, 1636, 2450, 2813
LweI	GCATC	2 cut(s)	874, 1408
MaeI	CTAG	6 cut(s)	158, 1148, 2070, 2432, 2460, 2573
MaeII	ACGT	2 cut(s)	315, 984
MaeIII	GTNAC	4 cut(s)	599, 1672, 2636, 2702
MalI	GATC	9 cut(s)	393, 683, 1377, 1704, 1803, 1879, 1971, 1984, 2499
MboI	GATC	9 cut(s)	391, 681, 1375, 1702, 1801, 1877, 1969, 1982, 2497
MfeI	CAATTG	1 cut(s)	1938
MflI	RGATCY	5 cut(s)	1375, 1702, 1801, 1982, 2497
MhlI	GDGCHC	3 cut(s)	1122, 1246, 2738
MlsI	TGGCCA	1 cut(s)	92
MluNI	TGGCCA	1 cut(s)	92
MlyI	GAGTC	3 cut(s)	431, 470, 2464
MmeI	TCCRAC	4 cut(s)	80, 345, 875, 2154
Mox20I	TGGCCA	1 cut(s)	92
Mph1103I	ATGCAT	1 cut(s)	1504
MroXI	GAANNNNTTC	1 cut(s)	2540
MscI	TGGCCA	1 cut(s)	92
MslI	CAYNNNNRTG	2 cut(s)	870, 2685
Msp20I	TGGCCA	1 cut(s)	92
MspA1I	CMGCKG	1 cut(s)	2233
MspCI	CTTAAG	1 cut(s)	1717
MspI	CCGG	6 cut(s)	61, 425, 441, 1159, 1247, 1519
MspR9I	CCNGG	8 cut(s)	61, 655, 831, 857, 1015, 1248, 1337, 1508
MunI	CAATTG	1 cut(s)	1938
MvaI	CCWGG	6 cut(s)	655, 831, 857, 1015, 1337, 1508
MvnI	CGCG	4 cut(s)	138, 270, 504, 540
MwoI	GCNNNNNNNGC	6 cut(s)	276, 1250, 1298, 1418, 1542, 2463
NciI	CCSGG	2 cut(s)	61, 1248
NcoI	CCATGG	1 cut(s)	192
NdeI	CATATG	1 cut(s)	2806
NdeII	GATC	9 cut(s)	391, 681, 1375, 1702, 1801, 1877, 1969, 1982, 2497
NlaIV	GGNNCC	5 cut(s)	519, 536, 1245, 1266, 1803
NmeAIII	GCCGAG	1 cut(s)	2455
NmuCI	GTSAC	2 cut(s)	599, 2702
NruI	TCGCGA	1 cut(s)	504
NsiI	ATGCAT	1 cut(s)	1504
NspI	RCATGY	2 cut(s)	2449, 2662
OliI	CACNNNNGTG	1 cut(s)	2685
PagI	TCATGA	1 cut(s)	795
PceI	AGGCCT	2 cut(s)	2269, 2411
PciI	ACATGT	2 cut(s)	2445, 2658
PciSI	GCTCTTC	1 cut(s)	961
PcsI	WCGNNNNNNNCGW	9 cut(s)	195, 219, 231, 300, 306, 309, 312, 318, 1786
PdmI	GAANNNNTTC	1 cut(s)	2540
PflMI	CCANNNNNTGG	2 cut(s)	1114, 1688
PfoI	TCCNGGA	2 cut(s)	829, 855
PinAI	ACCGGT	1 cut(s)	1518
PkrI	GCNGC	6 cut(s)	84, 539, 574, 1651, 2465, 2803
PleI	GAGTC	3 cut(s)	431, 470, 2464
PpsI	GAGTC	3 cut(s)	431, 470, 2464
PpuMI	RGGWCCY	1 cut(s)	2435
PscI	ACATGT	2 cut(s)	2445, 2658
PshAI	GACNNNNGTC	1 cut(s)	2112
Psp5II	RGGWCCY	1 cut(s)	2435
Psp6I	CCWGG	6 cut(s)	653, 829, 855, 1013, 1335, 1506
PspFI	CCCAGC	2 cut(s)	240, 273
PspGI	CCWGG	6 cut(s)	653, 829, 855, 1013, 1335, 1506
PspN4I	GGNNCC	5 cut(s)	519, 536, 1245, 1266, 1803
PspPI	GGNCC	4 cut(s)	378, 517, 1426, 2435
PspPPI	RGGWCCY	1 cut(s)	2435
PsrI	GAACNNNNNNTAC	4 cut(s)	965, 997, 1714, 1746
PstI	CTGCAG	1 cut(s)	484
PstNI	CAGNNNCTG	1 cut(s)	746
PsuI	RGATCY	5 cut(s)	1375, 1702, 1801, 1982, 2497
PvuII	CAGCTG	1 cut(s)	2233
RruI	TCGCGA	1 cut(s)	504
RsaI	GTAC	5 cut(s)	50, 413, 2396, 2666, 2829
RsaNI	GTAC	5 cut(s)	49, 412, 2395, 2665, 2828
RseI	CAYNNNNRTG	2 cut(s)	870, 2685
Rsr2I	CGGWCCG	1 cut(s)	378
RsrII	CGGWCCG	1 cut(s)	378
SapI	GCTCTTC	1 cut(s)	961
SatI	GCNGC	6 cut(s)	83, 538, 573, 1650, 2464, 2802
Sau3AI	GATC	9 cut(s)	391, 681, 1375, 1702, 1801, 1877, 1969, 1982, 2497
Sau96I	GGNCC	4 cut(s)	378, 517, 1426, 2435
SchI	GAGTC	3 cut(s)	431, 470, 2464
ScrFI	CCNGG	8 cut(s)	61, 655, 831, 857, 1015, 1248, 1337, 1508
SduI	GDGCHC	3 cut(s)	1122, 1246, 2738
SfaNI	GCATC	2 cut(s)	874, 1408
SfcI	CTRYAG	3 cut(s)	355, 480, 2118
SinI	GGWCC	3 cut(s)	378, 517, 2435
SmiI	ATTTAAAT	1 cut(s)	2016
SmiMI	CAYNNNNRTG	2 cut(s)	870, 2685
SmlI	CTYRAG	3 cut(s)	1003, 1717, 2405
SmoI	CTYRAG	3 cut(s)	1003, 1717, 2405
SseBI	AGGCCT	2 cut(s)	2269, 2411
SsiI	CCGC	9 cut(s)	262, 268, 283, 538, 701, 1448, 1462, 1612, 2632
SspI	AATATT	1 cut(s)	1457
SspMI	CTAG	6 cut(s)	158, 1148, 2070, 2432, 2460, 2573
StuI	AGGCCT	2 cut(s)	2269, 2411
StyD4I	CCNGG	8 cut(s)	59, 653, 829, 855, 1013, 1246, 1335, 1506
StyI	CCWWGG	3 cut(s)	192, 513, 2264
SwaI	ATTTAAAT	1 cut(s)	2016
TaaI	ACNGT	8 cut(s)	1100, 1630, 1672, 1678, 2078, 2111, 2122, 2250
TaiI	ACGT	2 cut(s)	318, 987
TaqI	TCGA	3 cut(s)	249, 333, 2653
TaqII	GACCGA	1 cut(s)	395
TatI	WGTACW	3 cut(s)	48, 411, 2394
TauI	GCSGC	1 cut(s)	540
TscAI	CASTG	6 cut(s)	1105, 1266, 1318, 1593, 1683, 1781
TseFI	GTSAC	2 cut(s)	599, 2702
TseI	GCWGC	5 cut(s)	82, 572, 1649, 2463, 2801
Tsp45I	GTSAC	2 cut(s)	599, 2702
TspGWI	ACGGA	2 cut(s)	14, 91
TspRI	CASTG	6 cut(s)	1105, 1266, 1318, 1593, 1683, 1781
Van91I	CCANNNNNTGG	2 cut(s)	1114, 1688
Vha464I	CTTAAG	1 cut(s)	1717
VneI	GTGCAC	1 cut(s)	1118
VpaK11BI	GGWCC	3 cut(s)	378, 517, 2435
XapI	RAATTY	3 cut(s)	664, 2000, 2189
XbaI	TCTAGA	1 cut(s)	2069
XceI	RCATGY	2 cut(s)	2449, 2662
XcmI	CCANNNNNNNNNTGG	2 cut(s)	759, 2602
XmiI	GTMKAC	1 cut(s)	342
XmnI	GAANNNNTTC	1 cut(s)	2540
XspI	CTAG	6 cut(s)	158, 1148, 2070, 2432, 2460, 2573
Zsp2I	ATGCAT	1 cut(s)	1504

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.