Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr14

Orthogroup ID

OG0007001

Physical Location & Seq

Genomic Coordinates Reverse (-)

27117348 .. 27119632

Gene Structure 2285 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD14G1178500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1062 bp

ATGAGTTTAACAACAGGAGTTCCAAAAGGTTCTTCTTGGCAGCCAAACATGACTGCAGACACAACAACTCCAAGTTACTGGCTCAACTGGCGGGTCTTGCTCTGCACCGTGTGGATTTCGATTGCGATGACTCTTTCGGTGTTTGTGGTGTGCAAATACGAAGCAAGAAGGGGCATTTCAAACCGCGGTAGCAGCGGAGAAACACAGCAACAAACGCCTGCAGGAGCATTGTTTGAGGATGAAACCTGGAGACCTTGCCTCAAGGGAATTCATCCAGCTTGGCTTCTGGCTTTTCGGGTTTTCGCTTTCTTTGTGCTCTTGATTCTGCTCATCGTCACCGCTTTCGTGGATGGAGGCAGCATTTTTCTCTTCTACACACAATGGACTTTTGCATTGATCACAATTTATTTTGGGCTTGGATCGTTGCTCTCCATTCGGGGATGCTACCGCTACCATAAGAAAACTGCCGGCGATAGGGTTGATAGTTTTGAGGCAGATACAGAGCAAGGCTCTACTCGTGCGACTCCTTCGCACGTAGTTTCTTGTAGTACTTCAACCACAGAGAAATCCTCAGCCCCCCATGTTGAACAACCTCAACCTCGCCAACCTGCTGGCTTTTCGGGTTATGTCTTCCAAATAATTTTCCAGATGAACGCCGGTGCTGTTCTTCTCACAGATTTCGTCTTCTGGTTCATACTAGTTCCATTTCTTGCAATCAAAGATTACAACTTGAATTTTTTCATTATAAATATGCACTCGATCAATGCAGTTTTCTTGCTCGGCGATACCGCTTTGAACAGCTTGCCCTTTCCCTGGTTCCGAATTGGGTATTTCTTCCTGTGGACAGTCTTTTACGTAGTTTTCCAGTGGCTCTTCCATGCTTGTGTCAAGTTCTGGTGGCCGTATCCATTTCTAGACTTGTCATCGCCATATGCTCCGGTGTGGTACTTGTCCGTCGGTCTACTGCACATCCCATGCTACAGCATTTTTGCTCTGATAATGAAGCTCAAACACCATCTGTTTTCGACGTGGTGGCCTGAATCGTATCAATGCGCGAGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

354

Amino Acids

40.45

Weight (kDa)

8.57

Isoelectric Point (pI)

34.26

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007001)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G62960 AT5G62960
fragaria_vesca	FvH4_5g05450 FvH4_5g05450
malus_domestica	MD06G1172600.v1.1 MD14G1178500.v1.1
prunus_persica	Prupe.5G171900_v2.0.a1 Prupe.5G171900_v2.0.a1 Prupe.5G171900_v2.0.a1 Prupe.5G171900_v2.0.a1 Prupe.5G171900_v2.0.a1 Prupe.5G171900_v2.0.a1 Prupe.5G171900_v2.0.a1 Prupe.5G171900_v2.0.a1
pyrus_communis	pycom06g15370 pycom14g14880
rosa_chinensis	RchiOBHm_Chr7g0193381
rosa_laevigata	RLG00000004274
rosa_multiflora	Rmu_ssc0000092.1_g000005
rosa_roxburghii	Rroxscaffold_3G00262160
rosa_rugosa	Rorug07G0009200
rosa_samantha	Rh7AG135600 Rh7BG135900 Rh7CG139300
rosa_wichuraiana	Rw7G011560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	746
Acc36I	ACCTGC	1 cut(s)	616
AccI	GTMKAC	1 cut(s)	961
AccII	CGCG	2 cut(s)	186, 1055
AciI	CCGC	7 cut(s)	91, 184, 186, 195, 339, 448, 789
AclWI	GGATC	1 cut(s)	427
AcoI	YGGCCR	1 cut(s)	899
AcsI	RAATTY	2 cut(s)	267, 733
AdeI	CACNNNGTG	1 cut(s)	111
AfaI	GTAC	2 cut(s)	550, 947
AfiI	CCNNNNNNNGG	2 cut(s)	474, 813
AgsI	TTSAA	5 cut(s)	180, 555, 587, 733, 796
AhlI	ACTAGT	1 cut(s)	697
AjiI	CACGTC	1 cut(s)	1029
AjnI	CCWGG	2 cut(s)	245, 812
AjuI	GAANNNNNNNTTGG	2 cut(s)	16, 48
AluBI	AGCT	3 cut(s)	278, 801, 1006
AluI	AGCT	3 cut(s)	278, 801, 1006
Alw21I	GWGCWC	1 cut(s)	318
Alw26I	GTCTC	1 cut(s)	244
AlwI	GGATC	1 cut(s)	427
AoxI	GGCC	2 cut(s)	899, 1034
ApeKI	GCWGC	3 cut(s)	40, 192, 357
ApoI	RAATTY	2 cut(s)	267, 733
Asp700I	GAANNNNTTC	1 cut(s)	737
AspLEI	GCGC	1 cut(s)	1055
AsuHPI	GGTGA	1 cut(s)	328
BauI	CACGAG	1 cut(s)	516
BbsI	GAAGAC	2 cut(s)	622, 676
Bbv12I	GWGCWC	1 cut(s)	318
BbvCI	CCTCAGC	1 cut(s)	571
BbvI	GCAGC	3 cut(s)	52, 204, 369
BccI	CCATC	2 cut(s)	344, 1023
BceAI	ACGGC	1 cut(s)	886
BciT130I	CCWGG	2 cut(s)	247, 814
BciVI	GTATCC	1 cut(s)	915
BclI	TGATCA	1 cut(s)	396
BcoDI	GTCTC	1 cut(s)	244
BcuI	ACTAGT	1 cut(s)	697
BfaI	CTAG	2 cut(s)	698, 914
BfmI	CTRYAG	3 cut(s)	54, 219, 979
BfuAI	ACCTGC	1 cut(s)	616
BfuI	GTATCC	1 cut(s)	915
BisI	GCNGC	3 cut(s)	41, 193, 358
BlsI	GCNGC	3 cut(s)	42, 194, 359
BmcAI	AGTACT	1 cut(s)	550
Bme1390I	CCNGG	2 cut(s)	247, 814
BmgBI	CACGTC	1 cut(s)	1029
BmiI	GGNNCC	1 cut(s)	818
BmrFI	CCNGG	2 cut(s)	247, 814
BmsI	GCATC	1 cut(s)	431
BpiI	GAAGAC	2 cut(s)	622, 676
BplI	GAGNNNNNCTC	4 cut(s)	494, 526, 554, 586
BpmI	CTGGAG	1 cut(s)	268
Bpu10I	CCTNAGC	1 cut(s)	571
BpuEI	CTTGAG	1 cut(s)	245
BsaAI	YACGTR	2 cut(s)	535, 856
BsaI	GGTCTC	1 cut(s)	244
BsaJI	CCNNGG	2 cut(s)	184, 812
BsaWI	WCCGGW	1 cut(s)	937
BsaXI	ACNNNNNCTCC	2 cut(s)	52, 82
Bsc4I	CCNNNNNNNGG	2 cut(s)	474, 813
Bse118I	RCCGGY	2 cut(s)	467, 656
Bse1I	ACTGG	3 cut(s)	83, 92, 865
BseBI	CCWGG	2 cut(s)	247, 814
BseDI	CCNNGG	2 cut(s)	184, 812
BseGI	GGATG	5 cut(s)	244, 271, 355, 446, 969
BseLI	CCNNNNNNNGG	2 cut(s)	474, 813
BseMII	CTCAG	1 cut(s)	585
BseNI	ACTGG	3 cut(s)	83, 92, 865
BseXI	GCAGC	3 cut(s)	52, 204, 369
BsgI	GTGCAG	2 cut(s)	88, 950
Bsh1236I	CGCG	2 cut(s)	186, 1055
BshFI	GGCC	2 cut(s)	901, 1036
BsiHKAI	GWGCWC	1 cut(s)	318
BsiSI	CCGG	3 cut(s)	468, 657, 938
BslI	CCNNNNNNNGG	2 cut(s)	474, 813
BsmAI	GTCTC	1 cut(s)	244
BsnI	GGCC	2 cut(s)	901, 1036
Bso31I	GGTCTC	1 cut(s)	244
Bsp1286I	GDGCHC	1 cut(s)	318
Bsp143I	GATC	3 cut(s)	396, 419, 759
BspACI	CCGC	7 cut(s)	91, 184, 186, 195, 339, 448, 789
BspANI	GGCC	2 cut(s)	901, 1036
BspCNI	CTCAG	1 cut(s)	584
BspFNI	CGCG	2 cut(s)	186, 1055
BspLI	GGNNCC	1 cut(s)	818
BspMAI	CTGCAG	2 cut(s)	58, 223
BspMI	ACCTGC	1 cut(s)	616
BspPI	GGATC	1 cut(s)	427
BspQI	GCTCTTC	1 cut(s)	878
BspTNI	GGTCTC	1 cut(s)	244
BsrFI	RCCGGY	2 cut(s)	467, 656
BsrI	ACTGG	3 cut(s)	83, 92, 865
BssAI	RCCGGY	2 cut(s)	467, 656
BssECI	CCNNGG	2 cut(s)	184, 812
BssMI	GATC	3 cut(s)	396, 419, 759
BssSI	CACGAG	1 cut(s)	516
Bst2BI	CACGAG	1 cut(s)	516
Bst2UI	CCWGG	2 cut(s)	247, 814
Bst4CI	ACNGT	2 cut(s)	109, 847
Bst6I	CTCTTC	2 cut(s)	374, 878
BstBAI	YACGTR	2 cut(s)	535, 856
BstC8I	GCNNGC	4 cut(s)	219, 469, 613, 803
BstDEI	CTNAG	1 cut(s)	571
BstDSI	CCRYGG	1 cut(s)	184
BstF5I	GGATG	5 cut(s)	244, 271, 355, 446, 969
BstFNI	CGCG	2 cut(s)	186, 1055
BstHHI	GCGC	1 cut(s)	1055
BstKTI	GATC	3 cut(s)	399, 422, 762
BstMAI	GTCTC	1 cut(s)	244
BstMBI	GATC	3 cut(s)	396, 419, 759
BstMWI	GCNNNNNNNGC	4 cut(s)	88, 97, 192, 214
BstNI	CCWGG	2 cut(s)	247, 814
BstSCI	CCNGG	2 cut(s)	245, 812
BstSFI	CTRYAG	3 cut(s)	54, 219, 979
BstSNI	TACGTA	1 cut(s)	856
BstUI	CGCG	2 cut(s)	186, 1055
BstV1I	GCAGC	3 cut(s)	52, 204, 369
BstV2I	GAAGAC	2 cut(s)	622, 676
BstXI	CCANNNNNNTGG	2 cut(s)	78, 611
BsuI	GTATCC	1 cut(s)	915
BsuRI	GGCC	2 cut(s)	901, 1036
BtgI	CCRYGG	1 cut(s)	184
BtgZI	GCGATG	2 cut(s)	140, 909
BtrI	CACGTC	1 cut(s)	1029
BtsCI	GGATG	5 cut(s)	244, 271, 355, 446, 969
BtsIMutI	CAGTG	1 cut(s)	872
BveI	ACCTGC	1 cut(s)	616
Cac8I	GCNNGC	4 cut(s)	219, 469, 613, 803
CfoI	GCGC	1 cut(s)	1055
Cfr10I	RCCGGY	2 cut(s)	467, 656
Cfr42I	CCGCGG	1 cut(s)	187
Csp6I	GTAC	2 cut(s)	549, 946
CviAII	CATG	4 cut(s)	49, 581, 878, 975
CviQI	GTAC	2 cut(s)	549, 946
DdeI	CTNAG	1 cut(s)	571
DpnI	GATC	3 cut(s)	398, 421, 761
DpnII	GATC	3 cut(s)	396, 419, 759
DraIII	CACNNNGTG	1 cut(s)	111
EaeI	YGGCCR	1 cut(s)	899
Eam1104I	CTCTTC	2 cut(s)	374, 878
EarI	CTCTTC	2 cut(s)	374, 878
Eco105I	TACGTA	1 cut(s)	856
Eco31I	GGTCTC	1 cut(s)	244
EcoRI	GAATTC	1 cut(s)	267
EcoRII	CCWGG	2 cut(s)	245, 812
FaeI	CATG	4 cut(s)	52, 584, 881, 978
FatI	CATG	4 cut(s)	48, 580, 877, 974
FauI	CCCGC	1 cut(s)	84
FauNDI	CATATG	1 cut(s)	931
FbaI	TGATCA	1 cut(s)	396
FblI	GTMKAC	1 cut(s)	961
Fnu4HI	GCNGC	3 cut(s)	41, 193, 358
FokI	GGATG	5 cut(s)	251, 258, 362, 453, 956
Fsp4HI	GCNGC	3 cut(s)	41, 193, 358
FspBI	CTAG	2 cut(s)	698, 914
GlaI	GCGC	1 cut(s)	1054
GluI	GCNGC	3 cut(s)	41, 193, 358
GsuI	CTGGAG	1 cut(s)	268
HaeIII	GGCC	2 cut(s)	901, 1036
HapII	CCGG	3 cut(s)	468, 657, 938
HhaI	GCGC	1 cut(s)	1055
Hin1II	CATG	4 cut(s)	52, 584, 881, 978
Hin6I	GCGC	1 cut(s)	1053
HinP1I	GCGC	1 cut(s)	1053
HinfI	GANTC	4 cut(s)	130, 322, 523, 1040
HpaII	CCGG	3 cut(s)	468, 657, 938
HphI	GGTGA	1 cut(s)	328
Hpy166II	GTNNAC	2 cut(s)	843, 962
Hpy188I	TCNGA	2 cut(s)	821, 996
Hpy188III	TCNNGA	3 cut(s)	319, 646, 914
Hpy8I	GTNNAC	2 cut(s)	843, 962
Hpy99I	CGWCG	2 cut(s)	959, 1030
HpyAV	CCTTC	2 cut(s)	162, 537
HpyCH4III	ACNGT	2 cut(s)	109, 847
HpyCH4IV	ACGT	3 cut(s)	534, 855, 1028
HpyCH4V	TGCA	9 cut(s)	56, 105, 153, 221, 392, 713, 754, 767, 967
HpyF10VI	GCNNNNNNNGC	4 cut(s)	88, 97, 192, 214
HpyF3I	CTNAG	1 cut(s)	571
HpySE526I	ACGT	3 cut(s)	534, 855, 1028
Hsp92II	CATG	4 cut(s)	52, 584, 881, 978
HspAI	GCGC	1 cut(s)	1053
KroI	GCCGGC	1 cut(s)	467
KroNI	GCCGGC	1 cut(s)	469
Ksp22I	TGATCA	1 cut(s)	396
KspI	CCGCGG	1 cut(s)	187
Kzo9I	GATC	3 cut(s)	396, 419, 759
LguI	GCTCTTC	1 cut(s)	878
LmnI	GCTCC	2 cut(s)	224, 940
Lsp1109I	GCAGC	3 cut(s)	52, 204, 369
LweI	GCATC	1 cut(s)	431
MaeI	CTAG	2 cut(s)	698, 914
MaeII	ACGT	3 cut(s)	534, 855, 1028
MaeIII	GTNAC	2 cut(s)	74, 334
MalI	GATC	3 cut(s)	398, 421, 761
MboI	GATC	3 cut(s)	396, 419, 759
MboII	GAAGA	7 cut(s)	24, 361, 622, 659, 676, 826, 865
MhlI	GDGCHC	1 cut(s)	318
MluCI	AATT	5 cut(s)	267, 402, 639, 733, 822
MlyI	GAGTC	2 cut(s)	124, 517
MnlI	CCTC	8 cut(s)	229, 269, 347, 484, 580, 603, 609, 1050
MroNI	GCCGGC	1 cut(s)	467
MroXI	GAANNNNTTC	1 cut(s)	737
MseI	TTAA	1 cut(s)	8
MslI	CAYNNNNRTG	1 cut(s)	882
MspA1I	CMGCKG	2 cut(s)	186, 195
MspI	CCGG	3 cut(s)	468, 657, 938
MspR9I	CCNGG	2 cut(s)	247, 814
MvaI	CCWGG	2 cut(s)	247, 814
MvnI	CGCG	2 cut(s)	186, 1055
MwoI	GCNNNNNNNGC	4 cut(s)	88, 97, 192, 214
NaeI	GCCGGC	1 cut(s)	469
NdeI	CATATG	1 cut(s)	931
NdeII	GATC	3 cut(s)	396, 419, 759
NgoMIV	GCCGGC	1 cut(s)	467
NlaIII	CATG	4 cut(s)	52, 584, 881, 978
NlaIV	GGNNCC	1 cut(s)	818
NmeAIII	GCCGAG	1 cut(s)	759
NmuCI	GTSAC	1 cut(s)	334
PciSI	GCTCTTC	1 cut(s)	878
PdiI	GCCGGC	1 cut(s)	469
PdmI	GAANNNNTTC	1 cut(s)	737
PfeI	GAWTC	2 cut(s)	322, 1040
PkrI	GCNGC	3 cut(s)	42, 194, 359
PleI	GAGTC	2 cut(s)	124, 517
PpsI	GAGTC	2 cut(s)	124, 517
Ppu21I	YACGTR	2 cut(s)	535, 856
PsiI	TTATAA	1 cut(s)	746
Psp6I	CCWGG	2 cut(s)	245, 812
PspGI	CCWGG	2 cut(s)	245, 812
PspN4I	GGNNCC	1 cut(s)	818
PstI	CTGCAG	2 cut(s)	58, 223
RsaI	GTAC	2 cut(s)	550, 947
RsaNI	GTAC	2 cut(s)	549, 946
RseI	CAYNNNNRTG	1 cut(s)	882
SacII	CCGCGG	1 cut(s)	187
SapI	GCTCTTC	1 cut(s)	878
SaqAI	TTAA	1 cut(s)	8
SatI	GCNGC	3 cut(s)	41, 193, 358
Sau3AI	GATC	3 cut(s)	396, 419, 759
SbfI	CCTGCAGG	1 cut(s)	223
ScaI	AGTACT	1 cut(s)	550
SchI	GAGTC	2 cut(s)	124, 517
ScrFI	CCNGG	2 cut(s)	247, 814
SdaI	CCTGCAGG	1 cut(s)	223
SduI	GDGCHC	1 cut(s)	318
SfaNI	GCATC	1 cut(s)	431
SfcI	CTRYAG	3 cut(s)	54, 219, 979
Sfr303I	CCGCGG	1 cut(s)	187
SgrAI	CRCCGGYG	1 cut(s)	656
SgrBI	CCGCGG	1 cut(s)	187
SmiMI	CAYNNNNRTG	1 cut(s)	882
SmlI	CTYRAG	1 cut(s)	260
SmoI	CTYRAG	1 cut(s)	260
SnaBI	TACGTA	1 cut(s)	856
SpeI	ACTAGT	1 cut(s)	697
Sse8387I	CCTGCAGG	1 cut(s)	223
Sse9I	AATT	5 cut(s)	267, 402, 639, 733, 822
SsiI	CCGC	7 cut(s)	91, 184, 186, 195, 339, 448, 789
SspMI	CTAG	2 cut(s)	698, 914
StyD4I	CCNGG	2 cut(s)	245, 812
TaaI	ACNGT	2 cut(s)	109, 847
TaiI	ACGT	3 cut(s)	537, 858, 1031
TaqI	TCGA	3 cut(s)	119, 758, 1025
TaqII	GACCGA	1 cut(s)	947
TasI	AATT	5 cut(s)	267, 402, 639, 733, 822
TatI	WGTACW	1 cut(s)	548
TfiI	GAWTC	2 cut(s)	322, 1040
Tru1I	TTAA	1 cut(s)	8
Tru9I	TTAA	1 cut(s)	8
TscAI	CASTG	1 cut(s)	872
TseFI	GTSAC	1 cut(s)	334
TseI	GCWGC	3 cut(s)	40, 192, 357
Tsp45I	GTSAC	1 cut(s)	334
TspDTI	ATGAA	6 cut(s)	255, 260, 665, 682, 730, 1016
TspGWI	ACGGA	1 cut(s)	943
TspRI	CASTG	1 cut(s)	872
XapI	RAATTY	2 cut(s)	267, 733
XbaI	TCTAGA	1 cut(s)	913
XmiI	GTMKAC	1 cut(s)	961
XmnI	GAANNNNTTC	1 cut(s)	737
XspI	CTAG	2 cut(s)	698, 914
ZrmI	AGTACT	1 cut(s)	550

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.