Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0007001

Physical Location & Seq

Genomic Coordinates Reverse (-)

11305164 .. 11310070

Gene Structure 4907 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG139300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1023 bp

ATGAAGAGCAATATAATGGGAACAAAAAGTTCTTGGGAGCCAATCATGACTGCAGATACAACAGCCTCGAGTTACTGGTTTAACTGGAGGTTTTTGCTTTGTTTTATATGGGTCACGATCTCCCTGACTCTTTCAGTACTTCTCATATTGAGATTTGAAGGGCATCAAAATTCGAGGCGTAGTAATAACAGCAGAGAAACCCAGCAAGAAGAAGAAGAAACAATTGGAACTTTGTATGAGGATGAAACTTGGAGACCATGCCTCAAAGGAATCCACCCAGCTTGGCTTCTGGCTTTTAGACTTGTTGCTTTCTTTGTGCTTTTGGTTCTGCTCATCATCACAGCTTGTGTTGATGGAGGTACCATCTTTTATTTTTATACACAGTGGACATTCACATTGATTACTATTTATTTTGGGCTTGGATCATTGCTCTCTATTCGAGGATGCTACCAATACCATAAGAAAACTGCTGGTGAAAGGGTTGATAATGTAGAGTTAGATGCAGAACAGGGCACCGTAGAGAAATACATAGAACCTCATGTTGAACAACAACATCAACCGCGCCATCCTGCAGGCATTTTGGGTTATGTCTTCCAAATAATTTTCCAGATGAACGCAGGAGCTGTCATCCTCACAGACTGTGTCTTTTGGTTTGTAATTGTTCCATTTCTTACAATCAAAGATTACAACTTGAACTTTCTGATTATAAATATGCACACAATCAATGCTGTTTTCTTGCTCGGTGAAACTGCTTTGAATTGCTTGCCATTTCCTTGGTTCAGAATAGGATATTTCTTCGTGTGGACTACCACTTATGTAGTTTTCCAGTGGATCTGCCATGCTTGTGTCAAACTTTGGTGGCCATATCCATTTCTGGACTTGTCGTCTCCGTATGCTCCATTATGGTATTTGTCTGTTGGTCTACTGCACTTCCCATGCTATGGCATTTTTGCTCTGATAATGAAGCTGAAACACCATCTGTTTTCGACAAAGTGCCCCGACTCTTATCAATGCATGAGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

340

Amino Acids

39.75

Weight (kDa)

6.59

Isoelectric Point (pI)

37.97

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007001)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G62960 AT5G62960
fragaria_vesca	FvH4_5g05450 FvH4_5g05450
malus_domestica	MD06G1172600.v1.1 MD14G1178500.v1.1
prunus_persica	Prupe.5G171900_v2.0.a1 Prupe.5G171900_v2.0.a1 Prupe.5G171900_v2.0.a1 Prupe.5G171900_v2.0.a1 Prupe.5G171900_v2.0.a1 Prupe.5G171900_v2.0.a1 Prupe.5G171900_v2.0.a1 Prupe.5G171900_v2.0.a1
pyrus_communis	pycom06g15370 pycom14g14880
rosa_chinensis	RchiOBHm_Chr7g0193381
rosa_laevigata	RLG00000004274
rosa_multiflora	Rmu_ssc0000092.1_g000005
rosa_roxburghii	Rroxscaffold_3G00262160
rosa_rugosa	Rorug07G0009200
rosa_samantha	Rh7AG135600 Rh7BG135900 Rh7CG139300
rosa_wichuraiana	Rw7G011560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	707
Acc65I	GGTACC	1 cut(s)	359
AccB1I	GGYRCC	2 cut(s)	359, 512
AccB7I	CCANNNNNTGG	1 cut(s)	941
AccI	GTMKAC	1 cut(s)	922
AccII	CGCG	1 cut(s)	562
AciI	CCGC	1 cut(s)	560
AclWI	GGATC	2 cut(s)	430, 839
AcoI	YGGCCR	1 cut(s)	860
AcsI	RAATTY	1 cut(s)	169
AfaI	GTAC	2 cut(s)	138, 361
AfiI	CCNNNNNNNGG	1 cut(s)	941
AgsI	TTSAA	4 cut(s)	158, 545, 694, 757
AhdI	GACNNNNNGTC	1 cut(s)	883
AjuI	GAANNNNNNNTTGG	2 cut(s)	207, 239
AluBI	AGCT	4 cut(s)	281, 344, 623, 967
AluI	AGCT	4 cut(s)	281, 344, 623, 967
Alw26I	GTCTC	2 cut(s)	247, 891
AlwI	GGATC	2 cut(s)	430, 839
AlwNI	CAGNNNCTG	1 cut(s)	623
Ama87I	CYCGRG	1 cut(s)	67
AoxI	GGCC	1 cut(s)	860
ApoI	RAATTY	1 cut(s)	169
Asp718I	GGTACC	1 cut(s)	359
AspLEI	GCGC	1 cut(s)	564
AsuHPI	GGTGA	2 cut(s)	485, 755
AvaI	CYCGRG	1 cut(s)	67
BaeGI	GKGCMC	2 cut(s)	515, 998
BalI	TGGCCA	1 cut(s)	862
BanI	GGYRCC	2 cut(s)	359, 512
BbsI	GAAGAC	1 cut(s)	583
BccI	CCATC	4 cut(s)	347, 371, 573, 984
BcoDI	GTCTC	2 cut(s)	247, 891
BfmI	CTRYAG	2 cut(s)	51, 570
BmcAI	AGTACT	1 cut(s)	138
BmeRI	GACNNNNNGTC	1 cut(s)	883
BmeT110I	CYCGRG	1 cut(s)	67
BmiI	GGNNCC	3 cut(s)	39, 361, 514
BmsI	GCATC	3 cut(s)	172, 434, 490
BpiI	GAAGAC	1 cut(s)	583
BpmI	CTGGAG	1 cut(s)	106
BsaI	GGTCTC	1 cut(s)	247
BsaJI	CCNNGG	1 cut(s)	773
Bsc4I	CCNNNNNNNGG	1 cut(s)	941
Bse1I	ACTGG	3 cut(s)	80, 89, 826
Bse3DI	GCAATG	1 cut(s)	425
BseDI	CCNNGG	1 cut(s)	773
BseGI	GGATG	4 cut(s)	247, 449, 565, 627
BseLI	CCNNNNNNNGG	1 cut(s)	941
BseMI	GCAATG	1 cut(s)	425
BseNI	ACTGG	3 cut(s)	80, 89, 826
BseSI	GKGCMC	2 cut(s)	515, 998
BseYI	CCCAGC	2 cut(s)	201, 277
BsgI	GTGCAG	1 cut(s)	911
Bsh1236I	CGCG	1 cut(s)	562
BshFI	GGCC	1 cut(s)	862
BshNI	GGYRCC	2 cut(s)	359, 512
BsiHKCI	CYCGRG	1 cut(s)	67
BslI	CCNNNNNNNGG	1 cut(s)	941
BsmAI	GTCTC	2 cut(s)	247, 891
BsmBI	CGTCTC	1 cut(s)	891
BsnI	GGCC	1 cut(s)	862
Bso31I	GGTCTC	1 cut(s)	247
BsoBI	CYCGRG	1 cut(s)	67
Bsp1286I	GDGCHC	2 cut(s)	515, 998
Bsp143I	GATC	3 cut(s)	117, 422, 831
BspACI	CCGC	1 cut(s)	560
BspANI	GGCC	1 cut(s)	862
BspFNI	CGCG	1 cut(s)	562
BspHI	TCATGA	1 cut(s)	45
BspLI	GGNNCC	3 cut(s)	39, 361, 514
BspMAI	CTGCAG	2 cut(s)	55, 574
BspPI	GGATC	2 cut(s)	430, 839
BspT107I	GGYRCC	2 cut(s)	359, 512
BspTNI	GGTCTC	1 cut(s)	247
BsrDI	GCAATG	1 cut(s)	425
BsrI	ACTGG	3 cut(s)	80, 89, 826
BssECI	CCNNGG	1 cut(s)	773
BssMI	GATC	3 cut(s)	117, 422, 831
BssT1I	CCWWGG	1 cut(s)	773
Bst4CI	ACNGT	3 cut(s)	384, 517, 641
BstC8I	GCNNGC	2 cut(s)	574, 764
BstF5I	GGATG	4 cut(s)	247, 449, 565, 627
BstFNI	CGCG	1 cut(s)	562
BstHHI	GCGC	1 cut(s)	564
BstKTI	GATC	3 cut(s)	120, 425, 834
BstMAI	GTCTC	2 cut(s)	247, 891
BstMBI	GATC	3 cut(s)	117, 422, 831
BstSFI	CTRYAG	2 cut(s)	51, 570
BstSLI	GKGCMC	2 cut(s)	515, 998
BstUI	CGCG	1 cut(s)	562
BstV2I	GAAGAC	1 cut(s)	583
BstX2I	RGATCY	1 cut(s)	831
BstXI	CCANNNNNNTGG	1 cut(s)	774
BstYI	RGATCY	1 cut(s)	831
BsuRI	GGCC	1 cut(s)	862
BtsCI	GGATG	4 cut(s)	247, 449, 565, 627
BtsIMutI	CAGTG	2 cut(s)	389, 833
Cac8I	GCNNGC	2 cut(s)	574, 764
CaiI	CAGNNNCTG	1 cut(s)	623
CciI	TCATGA	1 cut(s)	45
CfoI	GCGC	1 cut(s)	564
Csp6I	GTAC	2 cut(s)	137, 360
CspCI	CAANNNNNGTGG	2 cut(s)	263, 298
CviAII	CATG	6 cut(s)	46, 258, 539, 839, 936, 1015
CviQI	GTAC	2 cut(s)	137, 360
DpnI	GATC	3 cut(s)	119, 424, 833
DpnII	GATC	3 cut(s)	117, 422, 831
DriI	GACNNNNNGTC	1 cut(s)	883
EaeI	YGGCCR	1 cut(s)	860
Eam1105I	GACNNNNNGTC	1 cut(s)	883
Eco130I	CCWWGG	1 cut(s)	773
Eco31I	GGTCTC	1 cut(s)	247
Eco88I	CYCGRG	1 cut(s)	67
EcoT14I	CCWWGG	1 cut(s)	773
EcoT22I	ATGCAT	1 cut(s)	1016
ErhI	CCWWGG	1 cut(s)	773
Esp3I	CGTCTC	1 cut(s)	891
FaeI	CATG	6 cut(s)	49, 261, 542, 842, 939, 1018
FatI	CATG	6 cut(s)	45, 257, 538, 838, 935, 1014
FblI	GTMKAC	1 cut(s)	922
FokI	GGATG	4 cut(s)	254, 456, 552, 614
GlaI	GCGC	1 cut(s)	563
GsaI	CCCAGC	2 cut(s)	205, 281
GsuI	CTGGAG	1 cut(s)	106
HaeIII	GGCC	1 cut(s)	862
HhaI	GCGC	1 cut(s)	564
Hin1II	CATG	6 cut(s)	49, 261, 542, 842, 939, 1018
Hin6I	GCGC	1 cut(s)	562
HinP1I	GCGC	1 cut(s)	562
HinfI	GANTC	3 cut(s)	127, 270, 1001
HphI	GGTGA	2 cut(s)	485, 755
Hpy166II	GTNNAC	3 cut(s)	387, 804, 923
Hpy188I	TCNGA	3 cut(s)	702, 782, 957
Hpy188III	TCNNGA	4 cut(s)	46, 115, 607, 875
Hpy8I	GTNNAC	3 cut(s)	387, 804, 923
HpyAV	CCTTC	1 cut(s)	152
HpyCH4III	ACNGT	3 cut(s)	384, 517, 641
HpyCH4V	TGCA	6 cut(s)	53, 503, 572, 715, 928, 1014
Hsp92II	CATG	6 cut(s)	49, 261, 542, 842, 939, 1018
HspAI	GCGC	1 cut(s)	562
KpnI	GGTACC	1 cut(s)	363
Kzo9I	GATC	3 cut(s)	117, 422, 831
LmnI	GCTCC	3 cut(s)	37, 620, 901
LweI	GCATC	3 cut(s)	172, 434, 490
MaeIII	GTNAC	2 cut(s)	71, 112
MalI	GATC	3 cut(s)	119, 424, 833
MboI	GATC	3 cut(s)	117, 422, 831
MboII	GAAGA	6 cut(s)	16, 221, 224, 227, 583, 787
MfeI	CAATTG	1 cut(s)	222
MflI	RGATCY	1 cut(s)	831
MhlI	GDGCHC	2 cut(s)	515, 998
MlsI	TGGCCA	1 cut(s)	862
MluCI	AATT	5 cut(s)	169, 222, 600, 657, 757
MluNI	TGGCCA	1 cut(s)	862
MlyI	GAGTC	2 cut(s)	121, 995
Mox20I	TGGCCA	1 cut(s)	862
Mph1103I	ATGCAT	1 cut(s)	1016
MscI	TGGCCA	1 cut(s)	862
MseI	TTAA	1 cut(s)	81
MslI	CAYNNNNRTG	1 cut(s)	843
Msp20I	TGGCCA	1 cut(s)	862
MunI	CAATTG	1 cut(s)	222
MvnI	CGCG	1 cut(s)	562
NdeII	GATC	3 cut(s)	117, 422, 831
NlaIII	CATG	6 cut(s)	49, 261, 542, 842, 939, 1018
NlaIV	GGNNCC	3 cut(s)	39, 361, 514
NmuCI	GTSAC	1 cut(s)	112
NsiI	ATGCAT	1 cut(s)	1016
PaeR7I	CTCGAG	1 cut(s)	67
PagI	TCATGA	1 cut(s)	45
PfeI	GAWTC	1 cut(s)	270
PflFI	GACNNNGTC	1 cut(s)	641
PflMI	CCANNNNNTGG	1 cut(s)	941
PleI	GAGTC	2 cut(s)	121, 995
PpsI	GAGTC	2 cut(s)	121, 995
PsiI	TTATAA	1 cut(s)	707
PspFI	CCCAGC	2 cut(s)	201, 277
PspN4I	GGNNCC	3 cut(s)	39, 361, 514
PspXI	VCTCGAGB	1 cut(s)	67
PstI	CTGCAG	2 cut(s)	55, 574
PstNI	CAGNNNCTG	1 cut(s)	623
PsuI	RGATCY	1 cut(s)	831
PsyI	GACNNNGTC	1 cut(s)	641
RsaI	GTAC	2 cut(s)	138, 361
RsaNI	GTAC	2 cut(s)	137, 360
RseI	CAYNNNNRTG	1 cut(s)	843
SaqAI	TTAA	1 cut(s)	81
Sau3AI	GATC	3 cut(s)	117, 422, 831
SbfI	CCTGCAGG	1 cut(s)	574
ScaI	AGTACT	1 cut(s)	138
SchI	GAGTC	2 cut(s)	121, 995
SdaI	CCTGCAGG	1 cut(s)	574
SduI	GDGCHC	2 cut(s)	515, 998
SetI	ASST	8 cut(s)	92, 283, 346, 361, 538, 625, 969, 1022
SfaNI	GCATC	3 cut(s)	172, 434, 490
SfcI	CTRYAG	2 cut(s)	51, 570
Sfr274I	CTCGAG	1 cut(s)	67
SlaI	CTCGAG	1 cut(s)	67
SmiMI	CAYNNNNRTG	1 cut(s)	843
SmlI	CTYRAG	1 cut(s)	67
SmoI	CTYRAG	1 cut(s)	67
Sse8387I	CCTGCAGG	1 cut(s)	574
Sse9I	AATT	5 cut(s)	169, 222, 600, 657, 757
SsiI	CCGC	1 cut(s)	560
StyI	CCWWGG	1 cut(s)	773
TaaI	ACNGT	3 cut(s)	384, 517, 641
TaqI	TCGA	4 cut(s)	68, 173, 439, 986
TasI	AATT	5 cut(s)	169, 222, 600, 657, 757
TatI	WGTACW	1 cut(s)	136
TfiI	GAWTC	1 cut(s)	270
Tru1I	TTAA	1 cut(s)	81
Tru9I	TTAA	1 cut(s)	81
TscAI	CASTG	2 cut(s)	389, 833
TseFI	GTSAC	1 cut(s)	112
Tsp45I	GTSAC	1 cut(s)	112
TspDTI	ATGAA	4 cut(s)	17, 258, 626, 977
TspGWI	ACGGA	1 cut(s)	879
TspRI	CASTG	2 cut(s)	389, 833
Tth111I	GACNNNGTC	1 cut(s)	641
Van91I	CCANNNNNTGG	1 cut(s)	941
XapI	RAATTY	1 cut(s)	169
XhoI	CTCGAG	1 cut(s)	67
XmiI	GTMKAC	1 cut(s)	922
ZrmI	AGTACT	1 cut(s)	138
Zsp2I	ATGCAT	1 cut(s)	1016

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.