Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0007001

Physical Location & Seq

Genomic Coordinates Reverse (-)

10823379 .. 10826183

Gene Structure 2805 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG135600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1017 bp

ATGAATTCTTTAACAGGAACAAAAAGTTCTTGGGAGCCAATCATGACTGCAGATACAACAGCCTCGAGTTACTGGTTTAACTGGAGGTTTTTGCTTTGTTTTACATGGGTCACGATCTCCCTGACTCTTTCAGTACTTAGCATATTGAGATTTGAAGGGCATCAAAATTCGAGGCGTAGTAATAACAGCAGAGAAACCCAGCAAGAAGAAGAAACAATTGGAACTTTGTATGAGGATGAAACTTGGAGACCATGCCTCAAAGGAATCCACCCAGCTTGGCTTCTGGCTTTTAGACTTGTTGCTTTCTTTGTGCTTTTGGTTCTGCTCATCATCACAGCTTGTGTTGATGGGGGTACCATCTTTTATTTTTATACACAGTGGACATTCACATTGATTACTATTTATTTTGGGCTTGGATCATTGCTCTCTATTCGAGGATGCTACCAATACCATAAGAAAACTGCTGGTGAAAGGGTTGATAATGTAGAGTTAGATGCAGAACAGGGCACCGTAGAGAAATACATAGAACCTCATGTTGAACAACAACATCAACCGCGCCATCCTGCAGGCATTTTGGGTTATGTCTTCCAAATAATTTTCCAGATGAACGCAGGAGCTGTCATCCTCACAGACTGTGTCTTTTGGTTTGTAATTGTTCCATTTCTTACAATCAAAGATTACAACTTGAACTTTCTGATTATAAATATGCACACAATCAATGCTGTTTTCTTGCTCGGTGAAACTGCTTTGAATTGCTTGCCATTTCCTTGGTTCAGAATAGGATATTTCTTCGTGTGGACTACCACTTATGTAGTTTTCCTGTGGATCTGTCATGCTTGTGTCAAACTTTGGTGGCCATATCCATTTCTGGACTTGTCGTCTCCGTATGCTCCATTATGGTATTTGTCTGTTGGTCTACTGCACTTCCCATGCTATGGCATTTTTGCTCTGATAATGAAGCTGAAACACCATCTGTTTTCGACAAAGTGCCCTGACTCTTATCAATGCATGAGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

338

Amino Acids

39.41

Weight (kDa)

6.58

Isoelectric Point (pI)

35.88

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007001)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G62960 AT5G62960
fragaria_vesca	FvH4_5g05450 FvH4_5g05450
malus_domestica	MD06G1172600.v1.1 MD14G1178500.v1.1
prunus_persica	Prupe.5G171900_v2.0.a1 Prupe.5G171900_v2.0.a1 Prupe.5G171900_v2.0.a1 Prupe.5G171900_v2.0.a1 Prupe.5G171900_v2.0.a1 Prupe.5G171900_v2.0.a1 Prupe.5G171900_v2.0.a1 Prupe.5G171900_v2.0.a1
pyrus_communis	pycom06g15370 pycom14g14880
rosa_chinensis	RchiOBHm_Chr7g0193381
rosa_laevigata	RLG00000004274
rosa_multiflora	Rmu_ssc0000092.1_g000005
rosa_roxburghii	Rroxscaffold_3G00262160
rosa_rugosa	Rorug07G0009200
rosa_samantha	Rh7AG135600 Rh7BG135900 Rh7CG139300
rosa_wichuraiana	Rw7G011560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	701
Acc65I	GGTACC	1 cut(s)	353
AccB1I	GGYRCC	2 cut(s)	353, 506
AccB7I	CCANNNNNTGG	1 cut(s)	935
AccI	GTMKAC	1 cut(s)	916
AccII	CGCG	1 cut(s)	556
AciI	CCGC	1 cut(s)	554
AclWI	GGATC	2 cut(s)	424, 833
AcoI	YGGCCR	1 cut(s)	854
AcsI	RAATTY	2 cut(s)	4, 166
AfaI	GTAC	2 cut(s)	135, 355
AfiI	CCNNNNNNNGG	1 cut(s)	935
AgsI	TTSAA	4 cut(s)	155, 539, 688, 751
AhdI	GACNNNNNGTC	1 cut(s)	877
AjuI	GAANNNNNNNTTGG	2 cut(s)	201, 233
AluBI	AGCT	4 cut(s)	275, 338, 617, 961
AluI	AGCT	4 cut(s)	275, 338, 617, 961
Alw26I	GTCTC	2 cut(s)	241, 885
AlwI	GGATC	2 cut(s)	424, 833
AlwNI	CAGNNNCTG	1 cut(s)	617
Ama87I	CYCGRG	1 cut(s)	64
AoxI	GGCC	1 cut(s)	854
ApoI	RAATTY	2 cut(s)	4, 166
Asp718I	GGTACC	1 cut(s)	353
AspLEI	GCGC	1 cut(s)	558
AsuHPI	GGTGA	2 cut(s)	479, 749
AvaI	CYCGRG	1 cut(s)	64
BaeGI	GKGCMC	2 cut(s)	509, 992
BalI	TGGCCA	1 cut(s)	856
BanI	GGYRCC	2 cut(s)	353, 506
BbsI	GAAGAC	1 cut(s)	577
BccI	CCATC	4 cut(s)	341, 365, 567, 978
BcoDI	GTCTC	2 cut(s)	241, 885
BfmI	CTRYAG	2 cut(s)	48, 564
BmcAI	AGTACT	1 cut(s)	135
BmeRI	GACNNNNNGTC	1 cut(s)	877
BmeT110I	CYCGRG	1 cut(s)	64
BmiI	GGNNCC	3 cut(s)	36, 355, 508
BmsI	GCATC	3 cut(s)	169, 428, 484
BpiI	GAAGAC	1 cut(s)	577
BpmI	CTGGAG	1 cut(s)	103
BsaI	GGTCTC	1 cut(s)	241
BsaJI	CCNNGG	1 cut(s)	767
Bsc4I	CCNNNNNNNGG	1 cut(s)	935
Bse1I	ACTGG	2 cut(s)	77, 86
Bse3DI	GCAATG	1 cut(s)	419
BseDI	CCNNGG	1 cut(s)	767
BseGI	GGATG	4 cut(s)	241, 443, 559, 621
BseLI	CCNNNNNNNGG	1 cut(s)	935
BseMI	GCAATG	1 cut(s)	419
BseNI	ACTGG	2 cut(s)	77, 86
BseSI	GKGCMC	2 cut(s)	509, 992
BseYI	CCCAGC	2 cut(s)	198, 271
BsgI	GTGCAG	1 cut(s)	905
Bsh1236I	CGCG	1 cut(s)	556
BshFI	GGCC	1 cut(s)	856
BshNI	GGYRCC	2 cut(s)	353, 506
BsiHKCI	CYCGRG	1 cut(s)	64
BslI	CCNNNNNNNGG	1 cut(s)	935
BsmAI	GTCTC	2 cut(s)	241, 885
BsmBI	CGTCTC	1 cut(s)	885
BsnI	GGCC	1 cut(s)	856
Bso31I	GGTCTC	1 cut(s)	241
BsoBI	CYCGRG	1 cut(s)	64
Bsp1286I	GDGCHC	2 cut(s)	509, 992
Bsp143I	GATC	3 cut(s)	114, 416, 825
BspACI	CCGC	1 cut(s)	554
BspANI	GGCC	1 cut(s)	856
BspFNI	CGCG	1 cut(s)	556
BspHI	TCATGA	1 cut(s)	42
BspLI	GGNNCC	3 cut(s)	36, 355, 508
BspMAI	CTGCAG	2 cut(s)	52, 568
BspPI	GGATC	2 cut(s)	424, 833
BspT107I	GGYRCC	2 cut(s)	353, 506
BspTNI	GGTCTC	1 cut(s)	241
BsrDI	GCAATG	1 cut(s)	419
BsrI	ACTGG	2 cut(s)	77, 86
BssECI	CCNNGG	1 cut(s)	767
BssMI	GATC	3 cut(s)	114, 416, 825
BssT1I	CCWWGG	1 cut(s)	767
Bst4CI	ACNGT	3 cut(s)	378, 511, 635
BstC8I	GCNNGC	2 cut(s)	568, 758
BstDEI	CTNAG	1 cut(s)	137
BstF5I	GGATG	4 cut(s)	241, 443, 559, 621
BstFNI	CGCG	1 cut(s)	556
BstHHI	GCGC	1 cut(s)	558
BstKTI	GATC	3 cut(s)	117, 419, 828
BstMAI	GTCTC	2 cut(s)	241, 885
BstMBI	GATC	3 cut(s)	114, 416, 825
BstSFI	CTRYAG	2 cut(s)	48, 564
BstSLI	GKGCMC	2 cut(s)	509, 992
BstUI	CGCG	1 cut(s)	556
BstV2I	GAAGAC	1 cut(s)	577
BstX2I	RGATCY	1 cut(s)	825
BstXI	CCANNNNNNTGG	1 cut(s)	768
BstYI	RGATCY	1 cut(s)	825
BsuRI	GGCC	1 cut(s)	856
BtsCI	GGATG	4 cut(s)	241, 443, 559, 621
BtsIMutI	CAGTG	1 cut(s)	383
Cac8I	GCNNGC	2 cut(s)	568, 758
CaiI	CAGNNNCTG	1 cut(s)	617
CciI	TCATGA	1 cut(s)	42
CfoI	GCGC	1 cut(s)	558
Csp6I	GTAC	2 cut(s)	134, 354
CspCI	CAANNNNNGTGG	2 cut(s)	257, 292
CviAII	CATG	7 cut(s)	43, 105, 252, 533, 833, 930, 1009
CviQI	GTAC	2 cut(s)	134, 354
DdeI	CTNAG	1 cut(s)	137
DpnI	GATC	3 cut(s)	116, 418, 827
DpnII	GATC	3 cut(s)	114, 416, 825
DriI	GACNNNNNGTC	1 cut(s)	877
EaeI	YGGCCR	1 cut(s)	854
Eam1105I	GACNNNNNGTC	1 cut(s)	877
Eco130I	CCWWGG	1 cut(s)	767
Eco31I	GGTCTC	1 cut(s)	241
Eco88I	CYCGRG	1 cut(s)	64
EcoRI	GAATTC	1 cut(s)	4
EcoT14I	CCWWGG	1 cut(s)	767
EcoT22I	ATGCAT	1 cut(s)	1010
ErhI	CCWWGG	1 cut(s)	767
Esp3I	CGTCTC	1 cut(s)	885
FaeI	CATG	7 cut(s)	46, 108, 255, 536, 836, 933, 1012
FatI	CATG	7 cut(s)	42, 104, 251, 532, 832, 929, 1008
FblI	GTMKAC	1 cut(s)	916
FokI	GGATG	4 cut(s)	248, 450, 546, 608
GlaI	GCGC	1 cut(s)	557
GsaI	CCCAGC	2 cut(s)	202, 275
GsuI	CTGGAG	1 cut(s)	103
HaeIII	GGCC	1 cut(s)	856
HhaI	GCGC	1 cut(s)	558
Hin1II	CATG	7 cut(s)	46, 108, 255, 536, 836, 933, 1012
Hin6I	GCGC	1 cut(s)	556
HinP1I	GCGC	1 cut(s)	556
HinfI	GANTC	3 cut(s)	124, 264, 995
HphI	GGTGA	2 cut(s)	479, 749
Hpy166II	GTNNAC	3 cut(s)	381, 798, 917
Hpy188I	TCNGA	3 cut(s)	696, 776, 951
Hpy188III	TCNNGA	4 cut(s)	43, 112, 601, 869
Hpy8I	GTNNAC	3 cut(s)	381, 798, 917
HpyAV	CCTTC	1 cut(s)	149
HpyCH4III	ACNGT	3 cut(s)	378, 511, 635
HpyCH4V	TGCA	6 cut(s)	50, 497, 566, 709, 922, 1008
HpyF3I	CTNAG	1 cut(s)	137
Hsp92II	CATG	7 cut(s)	46, 108, 255, 536, 836, 933, 1012
HspAI	GCGC	1 cut(s)	556
KpnI	GGTACC	1 cut(s)	357
Kzo9I	GATC	3 cut(s)	114, 416, 825
LmnI	GCTCC	3 cut(s)	34, 614, 895
LweI	GCATC	3 cut(s)	169, 428, 484
MaeIII	GTNAC	2 cut(s)	68, 109
MalI	GATC	3 cut(s)	116, 418, 827
MboI	GATC	3 cut(s)	114, 416, 825
MboII	GAAGA	4 cut(s)	218, 221, 577, 781
MfeI	CAATTG	1 cut(s)	216
MflI	RGATCY	1 cut(s)	825
MhlI	GDGCHC	2 cut(s)	509, 992
MlsI	TGGCCA	1 cut(s)	856
MluCI	AATT	6 cut(s)	4, 166, 216, 594, 651, 751
MluNI	TGGCCA	1 cut(s)	856
MlyI	GAGTC	2 cut(s)	118, 989
MnlI	CCTC	9 cut(s)	73, 78, 165, 226, 266, 428, 540, 635, 1005
Mox20I	TGGCCA	1 cut(s)	856
Mph1103I	ATGCAT	1 cut(s)	1010
MscI	TGGCCA	1 cut(s)	856
MseI	TTAA	2 cut(s)	11, 78
MslI	CAYNNNNRTG	1 cut(s)	837
Msp20I	TGGCCA	1 cut(s)	856
MunI	CAATTG	1 cut(s)	216
MvnI	CGCG	1 cut(s)	556
NdeII	GATC	3 cut(s)	114, 416, 825
NlaIII	CATG	7 cut(s)	46, 108, 255, 536, 836, 933, 1012
NlaIV	GGNNCC	3 cut(s)	36, 355, 508
NmuCI	GTSAC	1 cut(s)	109
NsiI	ATGCAT	1 cut(s)	1010
PaeR7I	CTCGAG	1 cut(s)	64
PagI	TCATGA	1 cut(s)	42
PfeI	GAWTC	1 cut(s)	264
PflFI	GACNNNGTC	1 cut(s)	635
PflMI	CCANNNNNTGG	1 cut(s)	935
PleI	GAGTC	2 cut(s)	118, 989
PpsI	GAGTC	2 cut(s)	118, 989
PsiI	TTATAA	1 cut(s)	701
PspFI	CCCAGC	2 cut(s)	198, 271
PspN4I	GGNNCC	3 cut(s)	36, 355, 508
PspXI	VCTCGAGB	1 cut(s)	64
PstI	CTGCAG	2 cut(s)	52, 568
PstNI	CAGNNNCTG	1 cut(s)	617
PsuI	RGATCY	1 cut(s)	825
PsyI	GACNNNGTC	1 cut(s)	635
RsaI	GTAC	2 cut(s)	135, 355
RsaNI	GTAC	2 cut(s)	134, 354
RseI	CAYNNNNRTG	1 cut(s)	837
SaqAI	TTAA	2 cut(s)	11, 78
Sau3AI	GATC	3 cut(s)	114, 416, 825
SbfI	CCTGCAGG	1 cut(s)	568
ScaI	AGTACT	1 cut(s)	135
SchI	GAGTC	2 cut(s)	118, 989
SdaI	CCTGCAGG	1 cut(s)	568
SduI	GDGCHC	2 cut(s)	509, 992
SetI	ASST	7 cut(s)	89, 277, 340, 532, 619, 963, 1016
SfaNI	GCATC	3 cut(s)	169, 428, 484
SfcI	CTRYAG	2 cut(s)	48, 564
Sfr274I	CTCGAG	1 cut(s)	64
SlaI	CTCGAG	1 cut(s)	64
SmiMI	CAYNNNNRTG	1 cut(s)	837
SmlI	CTYRAG	1 cut(s)	64
SmoI	CTYRAG	1 cut(s)	64
Sse8387I	CCTGCAGG	1 cut(s)	568
Sse9I	AATT	6 cut(s)	4, 166, 216, 594, 651, 751
SsiI	CCGC	1 cut(s)	554
StyI	CCWWGG	1 cut(s)	767
TaaI	ACNGT	3 cut(s)	378, 511, 635
TaqI	TCGA	4 cut(s)	65, 170, 433, 980
TasI	AATT	6 cut(s)	4, 166, 216, 594, 651, 751
TatI	WGTACW	1 cut(s)	133
TfiI	GAWTC	1 cut(s)	264
Tru1I	TTAA	2 cut(s)	11, 78
Tru9I	TTAA	2 cut(s)	11, 78
TscAI	CASTG	1 cut(s)	383
TseFI	GTSAC	1 cut(s)	109
Tsp45I	GTSAC	1 cut(s)	109
TspDTI	ATGAA	4 cut(s)	17, 252, 620, 971
TspGWI	ACGGA	1 cut(s)	873
TspRI	CASTG	1 cut(s)	383
Tth111I	GACNNNGTC	1 cut(s)	635
Van91I	CCANNNNNTGG	1 cut(s)	935
XapI	RAATTY	2 cut(s)	4, 166
XhoI	CTCGAG	1 cut(s)	64
XmiI	GTMKAC	1 cut(s)	916
ZrmI	AGTACT	1 cut(s)	135
Zsp2I	ATGCAT	1 cut(s)	1010

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.