Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr6

Orthogroup ID

OG0007001

Physical Location & Seq

Genomic Coordinates Reverse (-)

19906363 .. 19908144

Gene Structure 1782 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom06g15370.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1095 bp

ATGGGATTTATAACAGGAGTTCCGAAAGGTTCTTCTTGGCAGCCAATCATGACTGCAGACACAACAACTTCAAGTTACTGGCTGAACTGGAGGGTCTTGCTCTGCACGATATGGATTTTGATTGCGATGACTCTTTCGGTGATTCTGGTTTACAAATACGAAGGAAGACCGCGCCGCTCAAAGCGCGGTAGCAGTGGAGAAAACCAGCAACAAACGTCTGCAGGAACATTGTTTGAGGATGAGACTTGGAGACCATGCCTCAAGGGAATTCACCCGGCTTGGCTTCTGGCTTTTCGGGTTTTCGCTTTCTTTGTGCTCTTGGTTCTGCTCATCGTTACCGCTTCCGTGGATGGAGGCAGCATTTTTCTCTACTACACACAGTGGACTTTTACTTTGATCACAATTTATTTTGGGCTTGGATCGTTGCTCTCCATTCGGGGATGCTACCGCTACCATAAGAAAACTGCCGGCGATAGGGTTGATAGTTTTGAGGTGGATACAGAACAAGGCTCGGCTCATGTGACTCCTTCACATGGAGGTTCTTCCAAAGATTCAATCATAGAGAAACCCTCAGGCCCCCATGTCGAACAACCTCAAGTTCGCCAACTTGCTGGCTTTTCGGGTTATATCTTCCAAATAATTTTCCAGATGAATGCCGGCGCTGTCCTTCTCACGGATTGTGTCTTCTGGTTCGTACTTGTTCCTTTTCTTACAATCAAAGACTACAACTTGAATTTTCTGATCATAAATATGCACACAATCAACGCAGTTTTCTTGCTCGCTGATACCGCGTTGAATAGCTTGCCATTTCCCTGGTTCCGAATCGGGTATTTCTTCCTGTGGACAATCGTTTATGTAGTTTTCCAGTGTCTCTTCCATGCTTGTGTCAAGCTGTGGTGGCCGTATCCATTTCTAGACTTGTCATCTCCATATGCTCCGCTGTGGTACTTGTCGGTCGGTCTACTGCACATCCCATGCTACAGCATTTTTGTTCTGATAATGAAGCTCAAACACCATCTGTTTTCGACGCGATACCCTGAATCGTATCATGCGCGAGGTAGTTCAGGCGTCGAGCTGAAACCAGACATCGTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

365

Amino Acids

41.53

Weight (kDa)

8.73

Isoelectric Point (pI)

31.09

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007001)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G62960 AT5G62960
fragaria_vesca	FvH4_5g05450 FvH4_5g05450
malus_domestica	MD06G1172600.v1.1 MD14G1178500.v1.1
prunus_persica	Prupe.5G171900_v2.0.a1 Prupe.5G171900_v2.0.a1 Prupe.5G171900_v2.0.a1 Prupe.5G171900_v2.0.a1 Prupe.5G171900_v2.0.a1 Prupe.5G171900_v2.0.a1 Prupe.5G171900_v2.0.a1 Prupe.5G171900_v2.0.a1
pyrus_communis	pycom06g15370 pycom14g14880
rosa_chinensis	RchiOBHm_Chr7g0193381
rosa_laevigata	RLG00000004274
rosa_multiflora	Rmu_ssc0000092.1_g000005
rosa_roxburghii	Rroxscaffold_3G00262160
rosa_rugosa	Rorug07G0009200
rosa_samantha	Rh7AG135600 Rh7BG135900 Rh7CG139300
rosa_wichuraiana	Rw7G011560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	11
AccBSI	CCGCTC	1 cut(s)	177
AccI	GTMKAC	1 cut(s)	961
AccII	CGCG	5 cut(s)	172, 186, 791, 1030, 1054
AciI	CCGC	7 cut(s)	170, 175, 186, 339, 448, 789, 938
AclWI	GGATC	1 cut(s)	427
AcoI	YGGCCR	1 cut(s)	899
AcsI	RAATTY	2 cut(s)	267, 733
AcyI	GRCGYC	1 cut(s)	1068
AdeI	CACNNNGTG	1 cut(s)	381
AfaI	GTAC	2 cut(s)	696, 947
AfiI	CCNNNNNNNGG	3 cut(s)	474, 533, 673
AgsI	TTSAA	4 cut(s)	72, 555, 733, 796
AjnI	CCWGG	1 cut(s)	812
AluBI	AGCT	4 cut(s)	801, 892, 1006, 1075
AluI	AGCT	4 cut(s)	801, 892, 1006, 1075
Alw21I	GWGCWC	1 cut(s)	318
Alw26I	GTCTC	3 cut(s)	236, 244, 875
AlwI	GGATC	1 cut(s)	427
AoxI	GGCC	2 cut(s)	574, 899
ApeKI	GCWGC	2 cut(s)	40, 357
ApoI	RAATTY	2 cut(s)	267, 733
ArsI	GACNNNNNNTTYG	2 cut(s)	376, 408
AspLEI	GCGC	4 cut(s)	174, 186, 662, 1054
AspS9I	GGNCC	1 cut(s)	575
AsuC2I	CCSGG	1 cut(s)	275
AsuHPI	GGTGA	2 cut(s)	151, 263
AxyI	CCTNAGG	1 cut(s)	571
BbsI	GAAGAC	2 cut(s)	172, 676
Bbv12I	GWGCWC	1 cut(s)	318
BbvI	GCAGC	2 cut(s)	52, 369
BccI	CCATC	2 cut(s)	344, 1023
BceAI	ACGGC	1 cut(s)	886
BciT130I	CCWGG	1 cut(s)	814
BciVI	GTATCC	2 cut(s)	490, 915
BclI	TGATCA	2 cut(s)	396, 741
BcnI	CCSGG	1 cut(s)	275
BcoDI	GTCTC	3 cut(s)	236, 244, 875
BfaI	CTAG	1 cut(s)	914
BfmI	CTRYAG	3 cut(s)	54, 219, 979
BfoI	RGCGCY	1 cut(s)	663
BfuI	GTATCC	2 cut(s)	490, 915
BisI	GCNGC	3 cut(s)	41, 175, 358
BlsI	GCNGC	3 cut(s)	42, 176, 359
Bme1390I	CCNGG	2 cut(s)	275, 814
BmgT120I	GGNCC	1 cut(s)	575
BmiI	GGNNCC	2 cut(s)	577, 818
BmrFI	CCNGG	2 cut(s)	275, 814
BmsI	GCATC	1 cut(s)	431
BpiI	GAAGAC	2 cut(s)	172, 676
BplI	GAGNNNNNCTC	2 cut(s)	554, 586
BpmI	CTGGAG	1 cut(s)	109
BpuEI	CTTGAG	2 cut(s)	245, 579
BpuMI	CCSGG	1 cut(s)	275
BsaHI	GRCGYC	1 cut(s)	1068
BsaI	GGTCTC	1 cut(s)	244
BsaJI	CCNNGG	2 cut(s)	345, 812
Bsc4I	CCNNNNNNNGG	3 cut(s)	474, 533, 673
Bse118I	RCCGGY	2 cut(s)	467, 656
Bse1I	ACTGG	3 cut(s)	83, 92, 865
Bse21I	CCTNAGG	1 cut(s)	571
BseBI	CCWGG	1 cut(s)	814
BseDI	CCNNGG	2 cut(s)	345, 812
BseGI	GGATG	4 cut(s)	244, 355, 446, 969
BseLI	CCNNNNNNNGG	3 cut(s)	474, 533, 673
BseMII	CTCAG	1 cut(s)	585
BseNI	ACTGG	3 cut(s)	83, 92, 865
BseXI	GCAGC	2 cut(s)	52, 369
BsgI	GTGCAG	2 cut(s)	88, 950
Bsh1236I	CGCG	5 cut(s)	172, 186, 791, 1030, 1054
Bsh1285I	CGRYCG	1 cut(s)	957
BshFI	GGCC	2 cut(s)	576, 901
BsiEI	CGRYCG	1 cut(s)	957
BsiHKAI	GWGCWC	1 cut(s)	318
BsiSI	CCGG	3 cut(s)	275, 468, 657
BslI	CCNNNNNNNGG	3 cut(s)	474, 533, 673
BsmAI	GTCTC	3 cut(s)	236, 244, 875
BsmI	GAATGC	1 cut(s)	658
BsnI	GGCC	2 cut(s)	576, 901
Bso31I	GGTCTC	1 cut(s)	244
Bsp1286I	GDGCHC	1 cut(s)	318
Bsp143I	GATC	3 cut(s)	396, 419, 741
BspACI	CCGC	7 cut(s)	170, 175, 186, 339, 448, 789, 938
BspANI	GGCC	2 cut(s)	576, 901
BspCNI	CTCAG	1 cut(s)	584
BspFNI	CGCG	5 cut(s)	172, 186, 791, 1030, 1054
BspHI	TCATGA	1 cut(s)	48
BspLI	GGNNCC	2 cut(s)	577, 818
BspMAI	CTGCAG	2 cut(s)	58, 223
BspPI	GGATC	1 cut(s)	427
BspTNI	GGTCTC	1 cut(s)	244
BsrBI	CCGCTC	1 cut(s)	177
BsrFI	RCCGGY	2 cut(s)	467, 656
BsrI	ACTGG	3 cut(s)	83, 92, 865
BssAI	RCCGGY	2 cut(s)	467, 656
BssECI	CCNNGG	2 cut(s)	345, 812
BssMI	GATC	3 cut(s)	396, 419, 741
BssNI	GRCGYC	1 cut(s)	1068
Bst2UI	CCWGG	1 cut(s)	814
Bst4CI	ACNGT	1 cut(s)	381
Bst6I	CTCTTC	1 cut(s)	878
BstACI	GRCGYC	1 cut(s)	1068
BstC8I	GCNNGC	5 cut(s)	469, 613, 658, 780, 803
BstDEI	CTNAG	1 cut(s)	571
BstDSI	CCRYGG	1 cut(s)	345
BstF5I	GGATG	4 cut(s)	244, 355, 446, 969
BstFNI	CGCG	5 cut(s)	172, 186, 791, 1030, 1054
BstH2I	RGCGCY	1 cut(s)	663
BstHHI	GCGC	4 cut(s)	174, 186, 662, 1054
BstKTI	GATC	3 cut(s)	399, 422, 744
BstMAI	GTCTC	3 cut(s)	236, 244, 875
BstMBI	GATC	3 cut(s)	396, 419, 741
BstMCI	CGRYCG	1 cut(s)	957
BstMWI	GCNNNNNNNGC	3 cut(s)	183, 788, 898
BstNI	CCWGG	1 cut(s)	814
BstSCI	CCNGG	2 cut(s)	273, 812
BstSFI	CTRYAG	3 cut(s)	54, 219, 979
BstUI	CGCG	5 cut(s)	172, 186, 791, 1030, 1054
BstV1I	GCAGC	2 cut(s)	52, 369
BstV2I	GAAGAC	2 cut(s)	172, 676
BstXI	CCANNNNNNTGG	2 cut(s)	611, 813
Bsu36I	CCTNAGG	1 cut(s)	571
BsuI	GTATCC	2 cut(s)	490, 915
BsuRI	GGCC	2 cut(s)	576, 901
BtgI	CCRYGG	1 cut(s)	345
BtgZI	GCGATG	1 cut(s)	140
BtsCI	GGATG	4 cut(s)	244, 355, 446, 969
BtsI	GCAGTG	1 cut(s)	199
BtsIMutI	CAGTG	3 cut(s)	199, 386, 872
Cac8I	GCNNGC	5 cut(s)	469, 613, 658, 780, 803
CciI	TCATGA	1 cut(s)	48
CfoI	GCGC	4 cut(s)	174, 186, 662, 1054
Cfr10I	RCCGGY	2 cut(s)	467, 656
Cfr13I	GGNCC	1 cut(s)	575
CseI	GACGC	2 cut(s)	1036, 1057
Csp6I	GTAC	2 cut(s)	695, 946
CviAII	CATG	8 cut(s)	49, 255, 518, 533, 581, 878, 975, 1049
CviQI	GTAC	2 cut(s)	695, 946
DdeI	CTNAG	1 cut(s)	571
DpnI	GATC	3 cut(s)	398, 421, 743
DpnII	GATC	3 cut(s)	396, 419, 741
DraIII	CACNNNGTG	1 cut(s)	381
EaeI	YGGCCR	1 cut(s)	899
Eam1104I	CTCTTC	1 cut(s)	878
EarI	CTCTTC	1 cut(s)	878
Eco31I	GGTCTC	1 cut(s)	244
Eco81I	CCTNAGG	1 cut(s)	571
EcoO109I	RGGNCCY	1 cut(s)	575
EcoRI	GAATTC	1 cut(s)	267
EcoRII	CCWGG	1 cut(s)	812
FaeI	CATG	8 cut(s)	52, 258, 521, 536, 584, 881, 978, 1052
FatI	CATG	8 cut(s)	48, 254, 517, 532, 580, 877, 974, 1048
FauNDI	CATATG	1 cut(s)	931
FbaI	TGATCA	2 cut(s)	396, 741
FblI	GTMKAC	1 cut(s)	961
Fnu4HI	GCNGC	3 cut(s)	41, 175, 358
FokI	GGATG	4 cut(s)	251, 362, 453, 956
Fsp4HI	GCNGC	3 cut(s)	41, 175, 358
FspBI	CTAG	1 cut(s)	914
GlaI	GCGC	4 cut(s)	173, 185, 661, 1053
GluI	GCNGC	3 cut(s)	41, 175, 358
GsuI	CTGGAG	1 cut(s)	109
HaeII	RGCGCY	1 cut(s)	663
HaeIII	GGCC	2 cut(s)	576, 901
HapII	CCGG	3 cut(s)	275, 468, 657
HgaI	GACGC	2 cut(s)	1036, 1057
HhaI	GCGC	4 cut(s)	174, 186, 662, 1054
Hin1I	GRCGYC	1 cut(s)	1068
Hin1II	CATG	8 cut(s)	52, 258, 521, 536, 584, 881, 978, 1052
Hin6I	GCGC	4 cut(s)	172, 184, 660, 1052
HinP1I	GCGC	4 cut(s)	172, 184, 660, 1052
HinfI	GANTC	6 cut(s)	130, 142, 523, 551, 822, 1040
HpaII	CCGG	3 cut(s)	275, 468, 657
HphI	GGTGA	2 cut(s)	151, 263
Hpy166II	GTNNAC	4 cut(s)	151, 384, 843, 962
Hpy188I	TCNGA	4 cut(s)	24, 741, 821, 996
Hpy188III	TCNNGA	3 cut(s)	49, 646, 914
Hpy8I	GTNNAC	4 cut(s)	151, 384, 843, 962
Hpy99I	CGWCG	2 cut(s)	1030, 1073
HpyAV	CCTTC	3 cut(s)	155, 537, 677
HpyCH4III	ACNGT	1 cut(s)	381
HpyCH4IV	ACGT	1 cut(s)	215
HpyCH4V	TGCA	5 cut(s)	56, 105, 221, 754, 967
HpyF10VI	GCNNNNNNNGC	3 cut(s)	183, 788, 898
HpyF3I	CTNAG	1 cut(s)	571
HpySE526I	ACGT	1 cut(s)	215
Hsp92I	GRCGYC	1 cut(s)	1068
Hsp92II	CATG	8 cut(s)	52, 258, 521, 536, 584, 881, 978, 1052
HspAI	GCGC	4 cut(s)	172, 184, 660, 1052
KroI	GCCGGC	2 cut(s)	467, 656
KroNI	GCCGGC	2 cut(s)	469, 658
Ksp22I	TGATCA	2 cut(s)	396, 741
Kzo9I	GATC	3 cut(s)	396, 419, 741
LmnI	GCTCC	1 cut(s)	940
Lsp1109I	GCAGC	2 cut(s)	52, 369
LweI	GCATC	1 cut(s)	431
MaeI	CTAG	1 cut(s)	914
MaeII	ACGT	1 cut(s)	215
MaeIII	GTNAC	3 cut(s)	74, 334, 520
MalI	GATC	3 cut(s)	398, 421, 743
MbiI	CCGCTC	1 cut(s)	177
MboI	GATC	3 cut(s)	396, 419, 741
MboII	GAAGA	7 cut(s)	24, 177, 534, 622, 676, 826, 865
MhlI	GDGCHC	1 cut(s)	318
MluCI	AATT	4 cut(s)	267, 402, 639, 733
MlyI	GAGTC	2 cut(s)	124, 517
MnlI	CCTC	9 cut(s)	84, 229, 269, 347, 484, 530, 580, 603, 1049
MroNI	GCCGGC	2 cut(s)	467, 656
MslI	CAYNNNNRTG	2 cut(s)	749, 882
MspA1I	CMGCKG	1 cut(s)	940
MspI	CCGG	3 cut(s)	275, 468, 657
MspR9I	CCNGG	2 cut(s)	275, 814
Mva1269I	GAATGC	1 cut(s)	658
MvaI	CCWGG	1 cut(s)	814
MvnI	CGCG	5 cut(s)	172, 186, 791, 1030, 1054
MwoI	GCNNNNNNNGC	3 cut(s)	183, 788, 898
NaeI	GCCGGC	2 cut(s)	469, 658
NciI	CCSGG	1 cut(s)	275
NdeI	CATATG	1 cut(s)	931
NdeII	GATC	3 cut(s)	396, 419, 741
NgoMIV	GCCGGC	2 cut(s)	467, 656
NlaIII	CATG	8 cut(s)	52, 258, 521, 536, 584, 881, 978, 1052
NlaIV	GGNNCC	2 cut(s)	577, 818
NmeAIII	GCCGAG	1 cut(s)	491
NmuCI	GTSAC	1 cut(s)	520
PagI	TCATGA	1 cut(s)	48
PctI	GAATGC	1 cut(s)	658
PdiI	GCCGGC	2 cut(s)	469, 658
PfeI	GAWTC	4 cut(s)	142, 551, 822, 1040
PkrI	GCNGC	3 cut(s)	42, 176, 359
PleI	GAGTC	2 cut(s)	124, 517
PpsI	GAGTC	2 cut(s)	124, 517
PsiI	TTATAA	1 cut(s)	11
Psp6I	CCWGG	1 cut(s)	812
PspGI	CCWGG	1 cut(s)	812
PspN4I	GGNNCC	2 cut(s)	577, 818
PspPI	GGNCC	1 cut(s)	575
PstI	CTGCAG	2 cut(s)	58, 223
RsaI	GTAC	2 cut(s)	696, 947
RsaNI	GTAC	2 cut(s)	695, 946
RseI	CAYNNNNRTG	2 cut(s)	749, 882
SatI	GCNGC	3 cut(s)	41, 175, 358
Sau3AI	GATC	3 cut(s)	396, 419, 741
Sau96I	GGNCC	1 cut(s)	575
SchI	GAGTC	2 cut(s)	124, 517
ScrFI	CCNGG	2 cut(s)	275, 814
SduI	GDGCHC	1 cut(s)	318
SfaNI	GCATC	1 cut(s)	431
SfcI	CTRYAG	3 cut(s)	54, 219, 979
SmiMI	CAYNNNNRTG	2 cut(s)	749, 882
SmlI	CTYRAG	2 cut(s)	260, 594
SmoI	CTYRAG	2 cut(s)	260, 594
Sse9I	AATT	4 cut(s)	267, 402, 639, 733
SsiI	CCGC	7 cut(s)	170, 175, 186, 339, 448, 789, 938
SspMI	CTAG	1 cut(s)	914
StyD4I	CCNGG	2 cut(s)	273, 812
TaaI	ACNGT	1 cut(s)	381
TaiI	ACGT	1 cut(s)	218
TaqI	TCGA	3 cut(s)	585, 1025, 1071
TaqII	GACCGA	2 cut(s)	943, 947
TasI	AATT	4 cut(s)	267, 402, 639, 733
TauI	GCSGC	1 cut(s)	177
TfiI	GAWTC	4 cut(s)	142, 551, 822, 1040
TscAI	CASTG	3 cut(s)	199, 386, 872
TseFI	GTSAC	1 cut(s)	520
TseI	GCWGC	2 cut(s)	40, 357
Tsp45I	GTSAC	1 cut(s)	520
TspDTI	ATGAA	2 cut(s)	665, 1016
TspGWI	ACGGA	2 cut(s)	334, 689
TspRI	CASTG	3 cut(s)	199, 386, 872
XapI	RAATTY	2 cut(s)	267, 733
XbaI	TCTAGA	1 cut(s)	913
XmiI	GTMKAC	1 cut(s)	961
XspI	CTAG	1 cut(s)	914

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.