pycom14g14880

isoform X1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr14
OG0007001
Physical Location & Seq
Reverse (-)
17545451 .. 17548294
2844 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom14g14880.4

Sequence Viewer

Length: 1230 bp
ATGGAAATGAAAGTGAAAGCCTCGTGCCTTCTGCTCGAAGCATTCCATCCTTTTCCTGTCTCTCTCCCTCCCCACCCCTCCACTTTCTCTCTAGACGTCTCTCCCTCCACAGCAAAGAAGCAAAGCATCTCTAATACCTTTCAAACACCTCCAAGTTTTGTTTGCTTTCCCTTTTTAACACCAGGAGTTCCAAAAGGTTCTTCTTGGCAGCCAAACATGACTGCAGACACAACAACTCCAAGTTACTGGCTCAACTGGCGGGTCTTGCTCTGCACCGTGTGGATTTCGATTGCGATGACTCTTTCAGTGTTTGTGGTGTGCAAATACGAAGCAAGAACGGGCATTTCAAACCGCGGTAGCGGCAGAGAAACACAGCAACAAACGCCTGCAGGATCATTGTTTGAGGATGAGACCTGGAGACCTTGCCTCAAGGGAATTCATCCGGCTTGGCTTCTGGCTTTTCGGGTTTTCGCTTTCTTTGTGCTCTTGATTCTGCTCGTCGTCACCGCTTTCGTGGATGGAGGCAGCATTTTTCTCTTCTACACACAATGGACTTTTACATTGATCACAATTTATTTTGGGCTTGGATCGTTGCTCTCCATTCGGGGATGCTACCGCTACCATAAGAAAACTGCCGGCGATAGGGTTGATAGTTTTGAGGTGGATACAGAGCAAGGCTCTACTCGTGCGACTCCTTCGCACGTAGTTTCTTGTAGTACTTCAACCACAGAGAAATCCTCAGCCCCCCATGTCGAACAACCTCAACCTCGCCAACCTGCTGGCTTTTCGGGTTATGTCTTCCAAATAATTTTCCAGATGAACGCCGGTGCTGTTCTTCTCACAGATTCCGTCTTCTGGTTCATACTTGTTCCATTTCTTGCAATCAAAGATTACAACTTGAATTTTTTCATTGTAAATATGCACACGATCAATGCAGTTTTCTTGCTCGGCGATACCGCTTTGAACAGCTTGCCCTTTCCCTGGTTCCGAATCGGGTATTTCTTCCTGTGGACAGTCTTTTACGTAGTTTTCCAGTGGCTCTTCCATGCTTGTGTCAAGTTCTGGTGGCCGTATCCATTTCTAGACTTGTCATCACCATATGCTCCGGTGTGGTACTTGTCCGTCGGTCTACTGCACATCCCATGCTACAGCATTTTTGCTCTGATAATGAAGCTCAAACACCATCTGTTTTCGACGTGGTGGCCTGAATCGTATCAATGCGCAAGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

410

Amino Acids

46.62

Weight (kDa)

8.61

Isoelectric Point (pI)

38.05

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 99
Acc16I TGCGCA 1 cut(s) 1222
Acc36I ACCTGC 1 cut(s) 784
AccI GTMKAC 1 cut(s) 1129
AccII CGCG 1 cut(s) 354
AciI CCGC 7 cut(s) 259, 352, 354, 360, 507, 616, 957
AclWI GGATC 2 cut(s) 400, 595
AcoI YGGCCR 1 cut(s) 1067
AcsI RAATTY 2 cut(s) 435, 901
AcyI GRCGYC 1 cut(s) 96
AdeI CACNNNGTG 1 cut(s) 279
AfaI GTAC 2 cut(s) 718, 1115
AfiI CCNNNNNNNGG 3 cut(s) 642, 855, 981
AgsI TTSAA 5 cut(s) 143, 348, 723, 901, 964
AjiI CACGTC 1 cut(s) 1197
AjnI CCWGG 3 cut(s) 181, 413, 980
AjuI GAANNNNNNNTTGG 2 cut(s) 184, 216
AluBI AGCT 2 cut(s) 969, 1174
AluI AGCT 2 cut(s) 969, 1174
Alw21I GWGCWC 1 cut(s) 486
Alw26I GTCTC 4 cut(s) 64, 103, 404, 412
AlwI GGATC 2 cut(s) 400, 595
AoxI GGCC 2 cut(s) 1067, 1202
ApeKI GCWGC 2 cut(s) 208, 525
ApoI RAATTY 2 cut(s) 435, 901
Asp700I GAANNNNTTC 1 cut(s) 905
AspLEI GCGC 1 cut(s) 1223
AsuHPI GGTGA 2 cut(s) 496, 1086
BauI CACGAG 2 cut(s) 22, 684
BbsI GAAGAC 2 cut(s) 790, 844
Bbv12I GWGCWC 1 cut(s) 486
BbvCI CCTCAGC 1 cut(s) 739
BbvI GCAGC 2 cut(s) 220, 537
BccI CCATC 3 cut(s) 54, 512, 1191
BceAI ACGGC 1 cut(s) 1054
BciT130I CCWGG 3 cut(s) 183, 415, 982
BciVI GTATCC 2 cut(s) 658, 1083
BclI TGATCA 1 cut(s) 564
BcoDI GTCTC 4 cut(s) 64, 103, 404, 412
BfaI CTAG 2 cut(s) 92, 1082
BfmI CTRYAG 3 cut(s) 222, 387, 1147
BfuAI ACCTGC 1 cut(s) 784
BfuI GTATCC 2 cut(s) 658, 1083
BisI GCNGC 3 cut(s) 209, 361, 526
BlsI GCNGC 3 cut(s) 210, 362, 527
BmcAI AGTACT 1 cut(s) 718
Bme1390I CCNGG 3 cut(s) 183, 415, 982
BmgBI CACGTC 1 cut(s) 1197
BmiI GGNNCC 1 cut(s) 986
BmrFI CCNGG 3 cut(s) 183, 415, 982
BmsI GCATC 2 cut(s) 135, 599
BpiI GAAGAC 2 cut(s) 790, 844
BplI GAGNNNNNCTC 4 cut(s) 662, 694, 722, 754
BpmI CTGGAG 1 cut(s) 436
Bpu10I CCTNAGC 1 cut(s) 739
BpuEI CTTGAG 1 cut(s) 413
BsaAI YACGTR 2 cut(s) 703, 1024
BsaHI GRCGYC 1 cut(s) 96
BsaI GGTCTC 2 cut(s) 404, 412
BsaJI CCNNGG 2 cut(s) 352, 980
BsaWI WCCGGW 1 cut(s) 1105
BsaXI ACNNNNNCTCC 2 cut(s) 220, 250
Bsc4I CCNNNNNNNGG 3 cut(s) 642, 855, 981
Bse118I RCCGGY 2 cut(s) 635, 824
Bse1I ACTGG 3 cut(s) 251, 260, 1033
BseBI CCWGG 3 cut(s) 183, 415, 982
BseDI CCNNGG 2 cut(s) 352, 980
BseGI GGATG 6 cut(s) 46, 412, 439, 523, 614, 1137
BseLI CCNNNNNNNGG 3 cut(s) 642, 855, 981
BseMII CTCAG 1 cut(s) 753
BseNI ACTGG 3 cut(s) 251, 260, 1033
BseXI GCAGC 2 cut(s) 220, 537
BsgI GTGCAG 2 cut(s) 256, 1118
Bsh1236I CGCG 1 cut(s) 354
BshFI GGCC 2 cut(s) 1069, 1204
BsiHKAI GWGCWC 1 cut(s) 486
BsiSI CCGG 4 cut(s) 443, 636, 825, 1106
BslI CCNNNNNNNGG 3 cut(s) 642, 855, 981
BsmAI GTCTC 4 cut(s) 64, 103, 404, 412
BsmBI CGTCTC 1 cut(s) 103
BsmI GAATGC 1 cut(s) 41
BsnI GGCC 2 cut(s) 1069, 1204
Bso31I GGTCTC 2 cut(s) 404, 412
Bsp1286I GDGCHC 1 cut(s) 486
Bsp143I GATC 4 cut(s) 392, 564, 587, 927
BspACI CCGC 7 cut(s) 259, 352, 354, 360, 507, 616, 957
BspANI GGCC 2 cut(s) 1069, 1204
BspCNI CTCAG 1 cut(s) 752
BspFNI CGCG 1 cut(s) 354
BspLI GGNNCC 1 cut(s) 986
BspMAI CTGCAG 2 cut(s) 226, 391
BspMI ACCTGC 1 cut(s) 784
BspPI GGATC 2 cut(s) 400, 595
BspQI GCTCTTC 1 cut(s) 1046
BspTNI GGTCTC 2 cut(s) 404, 412
BsrFI RCCGGY 2 cut(s) 635, 824
BsrI ACTGG 3 cut(s) 251, 260, 1033
BssAI RCCGGY 2 cut(s) 635, 824
BssECI CCNNGG 2 cut(s) 352, 980
BssMI GATC 4 cut(s) 392, 564, 587, 927
BssNI GRCGYC 1 cut(s) 96
BssSI CACGAG 2 cut(s) 22, 684
Bst2BI CACGAG 2 cut(s) 22, 684
Bst2UI CCWGG 3 cut(s) 183, 415, 982
Bst4CI ACNGT 2 cut(s) 277, 1015
Bst6I CTCTTC 2 cut(s) 542, 1046
BstACI GRCGYC 1 cut(s) 96
BstBAI YACGTR 2 cut(s) 703, 1024
BstC8I GCNNGC 4 cut(s) 387, 637, 781, 971
BstDEI CTNAG 1 cut(s) 739
BstDSI CCRYGG 1 cut(s) 352
BstF5I GGATG 6 cut(s) 46, 412, 439, 523, 614, 1137
BstFNI CGCG 1 cut(s) 354
BstHHI GCGC 1 cut(s) 1223
BstKTI GATC 4 cut(s) 395, 567, 590, 930
BstMAI GTCTC 4 cut(s) 64, 103, 404, 412
BstMBI GATC 4 cut(s) 392, 564, 587, 927
BstMWI GCNNNNNNNGC 4 cut(s) 256, 265, 360, 382
BstNI CCWGG 3 cut(s) 183, 415, 982
BstSCI CCNGG 3 cut(s) 181, 413, 980
BstSFI CTRYAG 3 cut(s) 222, 387, 1147
BstSNI TACGTA 1 cut(s) 1024
BstUI CGCG 1 cut(s) 354
BstV1I GCAGC 2 cut(s) 220, 537
BstV2I GAAGAC 2 cut(s) 790, 844
BstXI CCANNNNNNTGG 2 cut(s) 246, 779
BsuI GTATCC 2 cut(s) 658, 1083
BsuRI GGCC 2 cut(s) 1069, 1204
BtgI CCRYGG 1 cut(s) 352
BtgZI GCGATG 1 cut(s) 308
BtrI CACGTC 1 cut(s) 1197
BtsCI GGATG 6 cut(s) 46, 412, 439, 523, 614, 1137
BtsIMutI CAGTG 2 cut(s) 312, 1040
BveI ACCTGC 1 cut(s) 784
Cac8I GCNNGC 4 cut(s) 387, 637, 781, 971
CfoI GCGC 1 cut(s) 1223
Cfr10I RCCGGY 2 cut(s) 635, 824
Cfr42I CCGCGG 1 cut(s) 355
Csp6I GTAC 2 cut(s) 717, 1114
CviAII CATG 4 cut(s) 217, 749, 1046, 1143
CviQI GTAC 2 cut(s) 717, 1114
DdeI CTNAG 1 cut(s) 739
DpnI GATC 4 cut(s) 394, 566, 589, 929
DpnII GATC 4 cut(s) 392, 564, 587, 927
DraIII CACNNNGTG 1 cut(s) 279
EaeI YGGCCR 1 cut(s) 1067
Eam1104I CTCTTC 2 cut(s) 542, 1046
EarI CTCTTC 2 cut(s) 542, 1046
Eco105I TACGTA 1 cut(s) 1024
Eco31I GGTCTC 2 cut(s) 404, 412
EcoRI GAATTC 1 cut(s) 435
EcoRII CCWGG 3 cut(s) 181, 413, 980
Esp3I CGTCTC 1 cut(s) 103
FaeI CATG 4 cut(s) 220, 752, 1049, 1146
FatI CATG 4 cut(s) 216, 748, 1045, 1142
FauI CCCGC 1 cut(s) 252
FauNDI CATATG 1 cut(s) 1099
FbaI TGATCA 1 cut(s) 564
FblI GTMKAC 1 cut(s) 1129
Fnu4HI GCNGC 3 cut(s) 209, 361, 526
FokI GGATG 6 cut(s) 33, 419, 426, 530, 621, 1124
Fsp4HI GCNGC 3 cut(s) 209, 361, 526
FspBI CTAG 2 cut(s) 92, 1082
FspI TGCGCA 1 cut(s) 1222
GlaI GCGC 1 cut(s) 1222
GluI GCNGC 3 cut(s) 209, 361, 526
GsuI CTGGAG 1 cut(s) 436
HaeIII GGCC 2 cut(s) 1069, 1204
HapII CCGG 4 cut(s) 443, 636, 825, 1106
HhaI GCGC 1 cut(s) 1223
Hin1I GRCGYC 1 cut(s) 96
Hin1II CATG 4 cut(s) 220, 752, 1049, 1146
Hin6I GCGC 1 cut(s) 1221
HinP1I GCGC 1 cut(s) 1221
HinfI GANTC 6 cut(s) 298, 490, 691, 845, 990, 1208
HpaII CCGG 4 cut(s) 443, 636, 825, 1106
HphI GGTGA 2 cut(s) 496, 1086
Hpy166II GTNNAC 2 cut(s) 1011, 1130
Hpy188I TCNGA 2 cut(s) 989, 1164
Hpy188III TCNNGA 4 cut(s) 92, 487, 814, 1082
Hpy8I GTNNAC 2 cut(s) 1011, 1130
Hpy99I CGWCG 3 cut(s) 503, 1127, 1198
HpyAV CCTTC 2 cut(s) 38, 705
HpyCH4III ACNGT 2 cut(s) 277, 1015
HpyCH4IV ACGT 4 cut(s) 96, 702, 1023, 1196
HpyCH4V TGCA 8 cut(s) 224, 273, 321, 389, 881, 922, 935, 1135
HpyF10VI GCNNNNNNNGC 4 cut(s) 256, 265, 360, 382
HpyF3I CTNAG 1 cut(s) 739
HpySE526I ACGT 4 cut(s) 96, 702, 1023, 1196
Hsp92I GRCGYC 1 cut(s) 96
Hsp92II CATG 4 cut(s) 220, 752, 1049, 1146
HspAI GCGC 1 cut(s) 1221
KroI GCCGGC 1 cut(s) 635
KroNI GCCGGC 1 cut(s) 637
Ksp22I TGATCA 1 cut(s) 564
KspI CCGCGG 1 cut(s) 355
Kzo9I GATC 4 cut(s) 392, 564, 587, 927
LguI GCTCTTC 1 cut(s) 1046
LmnI GCTCC 1 cut(s) 1108
Lsp1109I GCAGC 2 cut(s) 220, 537
LweI GCATC 2 cut(s) 135, 599
MaeI CTAG 2 cut(s) 92, 1082
MaeII ACGT 4 cut(s) 96, 702, 1023, 1196
MaeIII GTNAC 2 cut(s) 242, 502
MalI GATC 4 cut(s) 394, 566, 589, 929
MboI GATC 4 cut(s) 392, 564, 587, 927
MboII GAAGA 7 cut(s) 192, 529, 790, 827, 844, 994, 1033
MhlI GDGCHC 1 cut(s) 486
MluCI AATT 4 cut(s) 435, 570, 807, 901
MlyI GAGTC 2 cut(s) 292, 685
MroNI GCCGGC 1 cut(s) 635
MroXI GAANNNNTTC 1 cut(s) 905
MseI TTAA 1 cut(s) 176
MslI CAYNNNNRTG 1 cut(s) 1050
MspA1I CMGCKG 1 cut(s) 354
MspI CCGG 4 cut(s) 443, 636, 825, 1106
MspR9I CCNGG 3 cut(s) 183, 415, 982
Mva1269I GAATGC 1 cut(s) 41
MvaI CCWGG 3 cut(s) 183, 415, 982
MvnI CGCG 1 cut(s) 354
MwoI GCNNNNNNNGC 4 cut(s) 256, 265, 360, 382
NaeI GCCGGC 1 cut(s) 637
NdeI CATATG 1 cut(s) 1099
NdeII GATC 4 cut(s) 392, 564, 587, 927
NgoMIV GCCGGC 1 cut(s) 635
NlaIII CATG 4 cut(s) 220, 752, 1049, 1146
NlaIV GGNNCC 1 cut(s) 986
NmeAIII GCCGAG 1 cut(s) 927
NmuCI GTSAC 1 cut(s) 502
NsbI TGCGCA 1 cut(s) 1222
PciSI GCTCTTC 1 cut(s) 1046
PctI GAATGC 1 cut(s) 41
PdiI GCCGGC 1 cut(s) 637
PdmI GAANNNNTTC 1 cut(s) 905
PfeI GAWTC 4 cut(s) 490, 845, 990, 1208
PkrI GCNGC 3 cut(s) 210, 362, 527
PleI GAGTC 2 cut(s) 292, 685
PpsI GAGTC 2 cut(s) 292, 685
Ppu21I YACGTR 2 cut(s) 703, 1024
Psp6I CCWGG 3 cut(s) 181, 413, 980
PspGI CCWGG 3 cut(s) 181, 413, 980
PspN4I GGNNCC 1 cut(s) 986
PstI CTGCAG 2 cut(s) 226, 391
RsaI GTAC 2 cut(s) 718, 1115
RsaNI GTAC 2 cut(s) 717, 1114
RseI CAYNNNNRTG 1 cut(s) 1050
SacII CCGCGG 1 cut(s) 355
SapI GCTCTTC 1 cut(s) 1046
SaqAI TTAA 1 cut(s) 176
SatI GCNGC 3 cut(s) 209, 361, 526
Sau3AI GATC 4 cut(s) 392, 564, 587, 927
SbfI CCTGCAGG 1 cut(s) 391
ScaI AGTACT 1 cut(s) 718
SchI GAGTC 2 cut(s) 292, 685
ScrFI CCNGG 3 cut(s) 183, 415, 982
SdaI CCTGCAGG 1 cut(s) 391
SduI GDGCHC 1 cut(s) 486
SfaNI GCATC 2 cut(s) 135, 599
SfcI CTRYAG 3 cut(s) 222, 387, 1147
Sfr303I CCGCGG 1 cut(s) 355
SgrAI CRCCGGYG 1 cut(s) 824
SgrBI CCGCGG 1 cut(s) 355
SmiMI CAYNNNNRTG 1 cut(s) 1050
SmlI CTYRAG 1 cut(s) 428
SmoI CTYRAG 1 cut(s) 428
SnaBI TACGTA 1 cut(s) 1024
Sse8387I CCTGCAGG 1 cut(s) 391
Sse9I AATT 4 cut(s) 435, 570, 807, 901
SsiI CCGC 7 cut(s) 259, 352, 354, 360, 507, 616, 957
SspMI CTAG 2 cut(s) 92, 1082
StyD4I CCNGG 3 cut(s) 181, 413, 980
TaaI ACNGT 2 cut(s) 277, 1015
TaiI ACGT 4 cut(s) 99, 705, 1026, 1199
TaqI TCGA 4 cut(s) 36, 287, 753, 1193
TaqII GACCGA 1 cut(s) 1115
TasI AATT 4 cut(s) 435, 570, 807, 901
TatI WGTACW 1 cut(s) 716
TauI GCSGC 1 cut(s) 363
TfiI GAWTC 4 cut(s) 490, 845, 990, 1208
Tru1I TTAA 1 cut(s) 176
Tru9I TTAA 1 cut(s) 176
TscAI CASTG 2 cut(s) 312, 1040
TseFI GTSAC 1 cut(s) 502
TseI GCWGC 2 cut(s) 208, 525
Tsp45I GTSAC 1 cut(s) 502
TspDTI ATGAA 6 cut(s) 23, 428, 833, 850, 898, 1184
TspGWI ACGGA 2 cut(s) 838, 1111
TspRI CASTG 2 cut(s) 312, 1040
XapI RAATTY 2 cut(s) 435, 901
XbaI TCTAGA 2 cut(s) 91, 1081
XmiI GTMKAC 1 cut(s) 1129
XmnI GAANNNNTTC 1 cut(s) 905
XspI CTAG 2 cut(s) 92, 1082
ZraI GACGTC 1 cut(s) 97
ZrmI AGTACT 1 cut(s) 718
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.