Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

OG0007001

Physical Location & Seq

Genomic Coordinates Reverse (-)

14669046 .. 14674357

Gene Structure 5312 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G171900.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1140 bp

ATGAAAACTTCCATTATAGATTTCAGAACAAATTTCCAGGCATCCCAATTCATTGTGAGTGAAAACAAACAGGGGAGTAAAAGTAACATCATGAGTTTTTTAACAGGAGTTCCAAAAGGTTCTTGGCAACCAATCATGACTGCAGATACGACAACCTCAAGTTACTGGTTCAACTGGAGGGTCATGCTTTGTACCATATGGGTTCTGACTTCAATGACTCTTTCAGTTATTCTCGTATGCAAATTTGAAGGGCCAGGTAGTTCGAAGCGTCGCAGCAGAGAAACCCAGCAAGAAATATCTGCAGGAACTTTGTATGAGGATGAAACTTGGAGACCGTGCCTCAAAGGCATTCACCCAGCCTGGCTTCTGGCTTTTAGAATATTTGCTTTCTTTGTGCTTTTGGTTCTGCTTATCATCACAGCTTTTGTGGATGGAGGTGGCATTTTTCTCTTCTACACACAGTGGACATTTACATTGATTACTATTTACTTTGGGCTTGGATCATTGCTCTCCATGCGGGGATGTTACCAATACCATAAGAAAACTGCCGGCGATAAGGTTGAGAGTTTTGAGGTGGATACAGAGCAAGGCACTTTTGTGTCTCCTCCGCTTGGAGTTAATTCCGGTACCTCTGCCACAGACAAAGCCTCAGGCTCCCATGTAGAACAACCTCAAGCTCGCCAACCTGCTGGCTTTTGGGGTTATGTCTTCCAAATAATTTTCCAGATGAATGCGGGTGCTGTCGTCCTCACAGACTGCGTCTTTTGGTTCATAATCGTTCCATTTCTTACCATCAAAGATTACAACTTGAATTTTCTGATTATAAACATGCACACAATCAATGCTGTTTTCTTGCTTGGCGAAACCGCTTTGAACAGCTTGCCGTTTCCCTGGTTCCGAATTGGATATTTCTTCCTGTGGACAGTCACCTATGTAGTTTTCCAGTGGCTCGTTCATGCTTTTTTCAAACTTTGGTGGCCCTATCCATTTCTTGACTTGTCATCTCCATATGTTCCACTATGGTACTTGTCGGTGGGTCTGCTGCATATCCCATGCTACAGCATTTTTGCTCTGATAATGAAGATGAAACATCAACTGTATTCAACACGGTTCCCTGAATCTTATCAATGTGGGAGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

380

Amino Acids

43.53

Weight (kDa)

8.73

Isoelectric Point (pI)

34.57

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007001)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G62960 AT5G62960
fragaria_vesca	FvH4_5g05450 FvH4_5g05450
malus_domestica	MD06G1172600.v1.1 MD14G1178500.v1.1
prunus_persica	Prupe.5G171900_v2.0.a1 Prupe.5G171900_v2.0.a1 Prupe.5G171900_v2.0.a1 Prupe.5G171900_v2.0.a1 Prupe.5G171900_v2.0.a1 Prupe.5G171900_v2.0.a1 Prupe.5G171900_v2.0.a1 Prupe.5G171900_v2.0.a1
pyrus_communis	pycom06g15370 pycom14g14880
rosa_chinensis	RchiOBHm_Chr7g0193381
rosa_laevigata	RLG00000004274
rosa_multiflora	Rmu_ssc0000092.1_g000005
rosa_roxburghii	Rroxscaffold_3G00262160
rosa_rugosa	Rorug07G0009200
rosa_samantha	Rh7AG135600 Rh7BG135900 Rh7CG139300
rosa_wichuraiana	Rw7G011560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	824
Acc36I	ACCTGC	1 cut(s)	694
Acc65I	GGTACC	1 cut(s)	626
AccB1I	GGYRCC	1 cut(s)	626
AciI	CCGC	4 cut(s)	517, 608, 734, 867
AclWI	GGATC	1 cut(s)	508
AcsI	RAATTY	3 cut(s)	31, 242, 811
AdeI	CACNNNGTG	1 cut(s)	462
AfaI	GTAC	3 cut(s)	193, 628, 1025
AfiI	CCNNNNNNNGG	1 cut(s)	611
AgsI	TTSAA	7 cut(s)	172, 213, 248, 811, 874, 967, 1104
AjnI	CCWGG	4 cut(s)	36, 253, 359, 890
AleI	CACNNNNGTG	1 cut(s)	596
AluBI	AGCT	3 cut(s)	422, 677, 879
AluI	AGCT	3 cut(s)	422, 677, 879
Alw26I	GTCTC	2 cut(s)	325, 606
AlwI	GGATC	1 cut(s)	508
AoxI	GGCC	2 cut(s)	251, 977
ApeKI	GCWGC	2 cut(s)	273, 1042
ApoI	RAATTY	3 cut(s)	31, 242, 811
Asp718I	GGTACC	1 cut(s)	626
AspS9I	GGNCC	2 cut(s)	251, 978
AsuHPI	GGTGA	2 cut(s)	344, 919
AsuII	TTCGAA	1 cut(s)	263
AxyI	CCTNAGG	1 cut(s)	649
BanI	GGYRCC	1 cut(s)	626
BbsI	GAAGAC	1 cut(s)	700
BbvI	GCAGC	2 cut(s)	285, 1029
BccI	CCATC	2 cut(s)	425, 800
BceAI	ACGGC	1 cut(s)	868
BciT130I	CCWGG	4 cut(s)	38, 255, 361, 892
BciVI	GTATCC	1 cut(s)	571
BcoDI	GTCTC	2 cut(s)	325, 606
BfmI	CTRYAG	3 cut(s)	141, 300, 1057
BfuAI	ACCTGC	1 cut(s)	694
BfuI	GTATCC	1 cut(s)	571
BglI	GCCNNNNNGGC	1 cut(s)	345
BisI	GCNGC	2 cut(s)	274, 1043
BlsI	GCNGC	2 cut(s)	275, 1044
Bme1390I	CCNGG	4 cut(s)	38, 255, 361, 892
BmgT120I	GGNCC	2 cut(s)	251, 978
BmiI	GGNNCC	4 cut(s)	628, 655, 896, 1112
BmrFI	CCNGG	4 cut(s)	38, 255, 361, 892
BmsI	GCATC	1 cut(s)	50
BpiI	GAAGAC	1 cut(s)	700
BpmI	CTGGAG	1 cut(s)	196
Bpu14I	TTCGAA	1 cut(s)	263
BpuEI	CTTGAG	2 cut(s)	142, 657
BsaI	GGTCTC	1 cut(s)	325
BsaJI	CCNNGG	1 cut(s)	890
BsaWI	WCCGGW	1 cut(s)	623
BsaXI	ACNNNNNCTCC	2 cut(s)	67, 97
Bsc4I	CCNNNNNNNGG	1 cut(s)	611
Bse118I	RCCGGY	1 cut(s)	548
Bse1I	ACTGG	3 cut(s)	170, 179, 943
Bse21I	CCTNAGG	1 cut(s)	649
Bse3DI	GCAATG	1 cut(s)	503
BseBI	CCWGG	4 cut(s)	38, 255, 361, 892
BseDI	CCNNGG	1 cut(s)	890
BseGI	GGATG	4 cut(s)	41, 325, 436, 527
BseLI	CCNNNNNNNGG	1 cut(s)	611
BseMI	GCAATG	1 cut(s)	503
BseMII	CTCAG	1 cut(s)	663
BseNI	ACTGG	3 cut(s)	170, 179, 943
BseRI	GAGGAG	1 cut(s)	594
BseXI	GCAGC	2 cut(s)	285, 1029
BseYI	CCCAGC	2 cut(s)	285, 355
BshFI	GGCC	2 cut(s)	253, 979
BshNI	GGYRCC	1 cut(s)	626
BsiSI	CCGG	2 cut(s)	549, 624
BslI	CCNNNNNNNGG	1 cut(s)	611
BsmAI	GTCTC	2 cut(s)	325, 606
BsmI	GAATGC	2 cut(s)	348, 736
BsnI	GGCC	2 cut(s)	253, 979
Bso31I	GGTCTC	1 cut(s)	325
Bsp119I	TTCGAA	1 cut(s)	263
Bsp143I	GATC	1 cut(s)	500
BspACI	CCGC	4 cut(s)	517, 608, 734, 867
BspANI	GGCC	2 cut(s)	253, 979
BspCNI	CTCAG	1 cut(s)	662
BspHI	TCATGA	2 cut(s)	90, 135
BspLI	GGNNCC	4 cut(s)	628, 655, 896, 1112
BspMAI	CTGCAG	2 cut(s)	145, 304
BspMI	ACCTGC	1 cut(s)	694
BspPI	GGATC	1 cut(s)	508
BspT104I	TTCGAA	1 cut(s)	263
BspT107I	GGYRCC	1 cut(s)	626
BspTNI	GGTCTC	1 cut(s)	325
BsrDI	GCAATG	1 cut(s)	503
BsrFI	RCCGGY	1 cut(s)	548
BsrI	ACTGG	3 cut(s)	170, 179, 943
BssAI	RCCGGY	1 cut(s)	548
BssECI	CCNNGG	1 cut(s)	890
BssMI	GATC	1 cut(s)	500
Bst2UI	CCWGG	4 cut(s)	38, 255, 361, 892
Bst4CI	ACNGT	5 cut(s)	336, 462, 925, 1098, 1110
Bst6I	CTCTTC	1 cut(s)	455
BstBI	TTCGAA	1 cut(s)	263
BstC8I	GCNNGC	4 cut(s)	550, 679, 691, 881
BstDEI	CTNAG	1 cut(s)	649
BstF5I	GGATG	4 cut(s)	41, 325, 436, 527
BstKTI	GATC	1 cut(s)	503
BstMAI	GTCTC	2 cut(s)	325, 606
BstMBI	GATC	1 cut(s)	500
BstMWI	GCNNNNNNNGC	2 cut(s)	345, 514
BstNI	CCWGG	4 cut(s)	38, 255, 361, 892
BstNSI	RCATGY	1 cut(s)	832
BstSCI	CCNGG	4 cut(s)	36, 253, 359, 890
BstSFI	CTRYAG	3 cut(s)	141, 300, 1057
BstV1I	GCAGC	2 cut(s)	285, 1029
BstV2I	GAAGAC	1 cut(s)	700
BstXI	CCANNNNNNTGG	1 cut(s)	689
Bsu36I	CCTNAGG	1 cut(s)	649
BsuI	GTATCC	1 cut(s)	571
BsuRI	GGCC	2 cut(s)	253, 979
BtsCI	GGATG	4 cut(s)	41, 325, 436, 527
BtsIMutI	CAGTG	2 cut(s)	467, 950
BveI	ACCTGC	1 cut(s)	694
Cac8I	GCNNGC	4 cut(s)	550, 679, 691, 881
CciI	TCATGA	2 cut(s)	90, 135
Cfr10I	RCCGGY	1 cut(s)	548
Cfr13I	GGNCC	2 cut(s)	251, 978
CseI	GACGC	2 cut(s)	257, 748
Csp6I	GTAC	3 cut(s)	192, 627, 1024
CviAII	CATG	8 cut(s)	91, 136, 184, 514, 659, 829, 956, 1053
CviQI	GTAC	3 cut(s)	192, 627, 1024
DdeI	CTNAG	1 cut(s)	649
DpnI	GATC	1 cut(s)	502
DpnII	GATC	1 cut(s)	500
DraIII	CACNNNGTG	1 cut(s)	462
Eam1104I	CTCTTC	1 cut(s)	455
EarI	CTCTTC	1 cut(s)	455
Eco31I	GGTCTC	1 cut(s)	325
Eco81I	CCTNAGG	1 cut(s)	649
EcoRII	CCWGG	4 cut(s)	36, 253, 359, 890
FaeI	CATG	8 cut(s)	94, 139, 187, 517, 662, 832, 959, 1056
FatI	CATG	8 cut(s)	90, 135, 183, 513, 658, 828, 955, 1052
FauI	CCCGC	2 cut(s)	510, 727
FauNDI	CATATG	2 cut(s)	197, 1009
Fnu4HI	GCNGC	2 cut(s)	274, 1043
FokI	GGATG	4 cut(s)	28, 332, 443, 534
Fsp4HI	GCNGC	2 cut(s)	274, 1043
GluI	GCNGC	2 cut(s)	274, 1043
GsaI	CCCAGC	2 cut(s)	289, 359
GsuI	CTGGAG	1 cut(s)	196
HaeIII	GGCC	2 cut(s)	253, 979
HapII	CCGG	2 cut(s)	549, 624
HgaI	GACGC	2 cut(s)	257, 748
Hin1II	CATG	8 cut(s)	94, 139, 187, 517, 662, 832, 959, 1056
HinfI	GANTC	2 cut(s)	217, 1118
HpaII	CCGG	2 cut(s)	549, 624
HphI	GGTGA	2 cut(s)	344, 919
Hpy166II	GTNNAC	2 cut(s)	465, 921
Hpy188I	TCNGA	5 cut(s)	26, 207, 819, 899, 1074
Hpy188III	TCNNGA	4 cut(s)	91, 136, 724, 992
Hpy8I	GTNNAC	2 cut(s)	465, 921
Hpy99I	CGWCG	1 cut(s)	273
HpyAV	CCTTC	1 cut(s)	242
HpyCH4III	ACNGT	5 cut(s)	336, 462, 925, 1098, 1110
HpyCH4V	TGCA	5 cut(s)	143, 240, 302, 832, 1045
HpyF10VI	GCNNNNNNNGC	2 cut(s)	345, 514
HpyF3I	CTNAG	1 cut(s)	649
Hsp92II	CATG	8 cut(s)	94, 139, 187, 517, 662, 832, 959, 1056
KpnI	GGTACC	1 cut(s)	630
KroI	GCCGGC	1 cut(s)	548
KroNI	GCCGGC	1 cut(s)	550
Kzo9I	GATC	1 cut(s)	500
LmnI	GCTCC	1 cut(s)	659
Lsp1109I	GCAGC	2 cut(s)	285, 1029
LweI	GCATC	1 cut(s)	50
MaeIII	GTNAC	4 cut(s)	83, 161, 524, 925
MalI	GATC	1 cut(s)	502
MboI	GATC	1 cut(s)	500
MboII	GAAGA	4 cut(s)	442, 700, 904, 1093
MluCI	AATT	7 cut(s)	31, 47, 242, 619, 717, 811, 900
MlyI	GAGTC	1 cut(s)	211
MroNI	GCCGGC	1 cut(s)	548
MseI	TTAA	2 cut(s)	101, 618
MslI	CAYNNNNRTG	1 cut(s)	596
MspI	CCGG	2 cut(s)	549, 624
MspR9I	CCNGG	4 cut(s)	38, 255, 361, 892
Mva1269I	GAATGC	2 cut(s)	348, 736
MvaI	CCWGG	4 cut(s)	38, 255, 361, 892
MwoI	GCNNNNNNNGC	2 cut(s)	345, 514
NaeI	GCCGGC	1 cut(s)	550
NdeI	CATATG	2 cut(s)	197, 1009
NdeII	GATC	1 cut(s)	500
NgoMIV	GCCGGC	1 cut(s)	548
NlaIII	CATG	8 cut(s)	94, 139, 187, 517, 662, 832, 959, 1056
NlaIV	GGNNCC	4 cut(s)	628, 655, 896, 1112
NmuCI	GTSAC	1 cut(s)	925
NspI	RCATGY	1 cut(s)	832
NspV	TTCGAA	1 cut(s)	263
OliI	CACNNNNGTG	1 cut(s)	596
PagI	TCATGA	2 cut(s)	90, 135
PctI	GAATGC	2 cut(s)	348, 736
PdiI	GCCGGC	1 cut(s)	550
PfeI	GAWTC	1 cut(s)	1118
PflFI	GACNNNGTC	1 cut(s)	758
PkrI	GCNGC	2 cut(s)	275, 1044
PleI	GAGTC	1 cut(s)	211
PpsI	GAGTC	1 cut(s)	211
PsiI	TTATAA	1 cut(s)	824
Psp6I	CCWGG	4 cut(s)	36, 253, 359, 890
PspFI	CCCAGC	2 cut(s)	285, 355
PspGI	CCWGG	4 cut(s)	36, 253, 359, 890
PspN4I	GGNNCC	4 cut(s)	628, 655, 896, 1112
PspPI	GGNCC	2 cut(s)	251, 978
PstI	CTGCAG	2 cut(s)	145, 304
PsyI	GACNNNGTC	1 cut(s)	758
RsaI	GTAC	3 cut(s)	193, 628, 1025
RsaNI	GTAC	3 cut(s)	192, 627, 1024
RseI	CAYNNNNRTG	1 cut(s)	596
SaqAI	TTAA	2 cut(s)	101, 618
SatI	GCNGC	2 cut(s)	274, 1043
Sau3AI	GATC	1 cut(s)	500
Sau96I	GGNCC	2 cut(s)	251, 978
SchI	GAGTC	1 cut(s)	211
ScrFI	CCNGG	4 cut(s)	38, 255, 361, 892
SfaNI	GCATC	1 cut(s)	50
SfcI	CTRYAG	3 cut(s)	141, 300, 1057
SfuI	TTCGAA	1 cut(s)	263
SmiMI	CAYNNNNRTG	1 cut(s)	596
SmlI	CTYRAG	2 cut(s)	157, 672
SmoI	CTYRAG	2 cut(s)	157, 672
Sse9I	AATT	7 cut(s)	31, 47, 242, 619, 717, 811, 900
SsiI	CCGC	4 cut(s)	517, 608, 734, 867
SspI	AATATT	1 cut(s)	381
StyD4I	CCNGG	4 cut(s)	36, 253, 359, 890
TaaI	ACNGT	5 cut(s)	336, 462, 925, 1098, 1110
TaqI	TCGA	1 cut(s)	263
TasI	AATT	7 cut(s)	31, 47, 242, 619, 717, 811, 900
TfiI	GAWTC	1 cut(s)	1118
Tru1I	TTAA	2 cut(s)	101, 618
Tru9I	TTAA	2 cut(s)	101, 618
TscAI	CASTG	2 cut(s)	467, 950
TseFI	GTSAC	1 cut(s)	925
TseI	GCWGC	2 cut(s)	273, 1042
Tsp45I	GTSAC	1 cut(s)	925
TspDTI	ATGAA	8 cut(s)	17, 40, 336, 743, 760, 944, 1094, 1100
TspRI	CASTG	2 cut(s)	467, 950
Tth111I	GACNNNGTC	1 cut(s)	758
XapI	RAATTY	3 cut(s)	31, 242, 811
XceI	RCATGY	1 cut(s)	832
XcmI	CCANNNNNNNNNTGG	1 cut(s)	120

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.