Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr7

Orthogroup ID

OG0007001

Physical Location & Seq

Genomic Coordinates Reverse (-)

10840613 .. 10842390

Gene Structure 1778 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw7G011560.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 984 bp

ATGAATTCTTTAACAGGAACAAAAAGTTCTTGGGAGCCAATCATGACTGCAGATACAACAGCCTCGAGTTACTGGTTTAACTGGAGGTTTTTGCTTTGTTTTACATGGGTCACCATCTCCCTGACTCTTTCAGTACTTCTCATATTGAGATTTGAAGGGCATCAAAATTCGAGGCGTAGTAATAACAGCAGAGAAACCCAGCAAGAAGAAGAAACAATTGGAACTTTGTATGAGGATGAAACTTGGAGACCATGCCTCAAAGGAATCCACCCAGCTTGGCTTCTGGCTTTTAGACTTGTTGCTTTCTTTGTGCTTTTGGTTCTGCTCATCATCACAGCTTGTGTTGATGGAGGCACCATCTTTTATTTTTATACACAGTGGACATTCACATTGATTACTATTTATTTTGGGCTTGGATCATTGCTCTCTATTCGAGGATGCTACCAATACCATAAGAAAACTGCTGGTGAAAGGGTTGATAATAAATACATAGAACCTCATGTTGAACAACAACATCAACCGCGCCATCCTGCAGGCATTTTGGGTTATGTCTTCCAAATAATTTTCCAGATGAACGCAGGAGCTGTCATCCTCACAGACTGTGTCTTTTGGTTTGTAATTGTTCCATTTCTTACAATCAAAGATTACAACTTGAACTTTCTGATTATAAATATGCACACAATCAATGCTGTTTTCTTGCTCGGTGAAACTGCTTTGAATTGCTTGCCATTTCCTTGGTTCAGAATAGGATATTTCTTCGTGTGGACTACCACTTATGTAGTTTTCCAGTGGATCTGTCATGCTTGTGTCAAACTTTGGTGGCCATATCCATTTCTGGACTTGTCGTCTCCGTATGCTCCATTATGGTATTTGTCTGTTGGTCTACTGCACTTCCCATGCTATGGCATTTTTGCTCTGATAATGAAGCTGAAACACCATCTGTTTTCGACAAAGTGCCCCGACTCTTATCAATGCATGAGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

327

Amino Acids

38.28

Weight (kDa)

7.98

Isoelectric Point (pI)

36.42

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007001)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G62960 AT5G62960
fragaria_vesca	FvH4_5g05450 FvH4_5g05450
malus_domestica	MD06G1172600.v1.1 MD14G1178500.v1.1
prunus_persica	Prupe.5G171900_v2.0.a1 Prupe.5G171900_v2.0.a1 Prupe.5G171900_v2.0.a1 Prupe.5G171900_v2.0.a1 Prupe.5G171900_v2.0.a1 Prupe.5G171900_v2.0.a1 Prupe.5G171900_v2.0.a1 Prupe.5G171900_v2.0.a1
pyrus_communis	pycom06g15370 pycom14g14880
rosa_chinensis	RchiOBHm_Chr7g0193381
rosa_laevigata	RLG00000004274
rosa_multiflora	Rmu_ssc0000092.1_g000005
rosa_roxburghii	Rroxscaffold_3G00262160
rosa_rugosa	Rorug07G0009200
rosa_samantha	Rh7AG135600 Rh7BG135900 Rh7CG139300
rosa_wichuraiana	Rw7G011560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	668
AccB1I	GGYRCC	1 cut(s)	353
AccB7I	CCANNNNNTGG	1 cut(s)	902
AccI	GTMKAC	1 cut(s)	883
AccII	CGCG	1 cut(s)	523
AciI	CCGC	1 cut(s)	521
AclWI	GGATC	2 cut(s)	424, 800
AcoI	YGGCCR	1 cut(s)	821
AcsI	RAATTY	2 cut(s)	4, 166
AfaI	GTAC	1 cut(s)	135
AfiI	CCNNNNNNNGG	1 cut(s)	902
AgsI	TTSAA	4 cut(s)	155, 506, 655, 718
AhdI	GACNNNNNGTC	1 cut(s)	844
AjuI	GAANNNNNNNTTGG	2 cut(s)	201, 233
AluBI	AGCT	4 cut(s)	275, 338, 584, 928
AluI	AGCT	4 cut(s)	275, 338, 584, 928
Alw26I	GTCTC	2 cut(s)	241, 852
AlwI	GGATC	2 cut(s)	424, 800
AlwNI	CAGNNNCTG	1 cut(s)	584
Ama87I	CYCGRG	1 cut(s)	64
AoxI	GGCC	1 cut(s)	821
ApoI	RAATTY	2 cut(s)	4, 166
AspLEI	GCGC	1 cut(s)	525
AsuHPI	GGTGA	3 cut(s)	103, 479, 716
AvaI	CYCGRG	1 cut(s)	64
BaeGI	GKGCMC	1 cut(s)	959
BalI	TGGCCA	1 cut(s)	823
BanI	GGYRCC	1 cut(s)	353
BbsI	GAAGAC	1 cut(s)	544
BccI	CCATC	5 cut(s)	122, 341, 365, 534, 945
BcoDI	GTCTC	2 cut(s)	241, 852
BfmI	CTRYAG	2 cut(s)	48, 531
BmcAI	AGTACT	1 cut(s)	135
BmeRI	GACNNNNNGTC	1 cut(s)	844
BmeT110I	CYCGRG	1 cut(s)	64
BmiI	GGNNCC	2 cut(s)	36, 355
BmsI	GCATC	2 cut(s)	169, 428
BpiI	GAAGAC	1 cut(s)	544
BpmI	CTGGAG	1 cut(s)	103
BsaI	GGTCTC	1 cut(s)	241
BsaJI	CCNNGG	1 cut(s)	734
Bsc4I	CCNNNNNNNGG	1 cut(s)	902
Bse1I	ACTGG	3 cut(s)	77, 86, 787
Bse3DI	GCAATG	1 cut(s)	419
BseDI	CCNNGG	1 cut(s)	734
BseGI	GGATG	4 cut(s)	241, 443, 526, 588
BseLI	CCNNNNNNNGG	1 cut(s)	902
BseMI	GCAATG	1 cut(s)	419
BseNI	ACTGG	3 cut(s)	77, 86, 787
BseSI	GKGCMC	1 cut(s)	959
BseYI	CCCAGC	2 cut(s)	198, 271
BsgI	GTGCAG	1 cut(s)	872
Bsh1236I	CGCG	1 cut(s)	523
BshFI	GGCC	1 cut(s)	823
BshNI	GGYRCC	1 cut(s)	353
BsiHKCI	CYCGRG	1 cut(s)	64
BslI	CCNNNNNNNGG	1 cut(s)	902
BsmAI	GTCTC	2 cut(s)	241, 852
BsmBI	CGTCTC	1 cut(s)	852
BsnI	GGCC	1 cut(s)	823
Bso31I	GGTCTC	1 cut(s)	241
BsoBI	CYCGRG	1 cut(s)	64
Bsp1286I	GDGCHC	1 cut(s)	959
Bsp143I	GATC	2 cut(s)	416, 792
BspACI	CCGC	1 cut(s)	521
BspANI	GGCC	1 cut(s)	823
BspFNI	CGCG	1 cut(s)	523
BspHI	TCATGA	1 cut(s)	42
BspLI	GGNNCC	2 cut(s)	36, 355
BspMAI	CTGCAG	2 cut(s)	52, 535
BspPI	GGATC	2 cut(s)	424, 800
BspT107I	GGYRCC	1 cut(s)	353
BspTNI	GGTCTC	1 cut(s)	241
BsrDI	GCAATG	1 cut(s)	419
BsrI	ACTGG	3 cut(s)	77, 86, 787
BssECI	CCNNGG	1 cut(s)	734
BssMI	GATC	2 cut(s)	416, 792
BssT1I	CCWWGG	1 cut(s)	734
Bst4CI	ACNGT	2 cut(s)	378, 602
BstC8I	GCNNGC	2 cut(s)	535, 725
BstEII	GGTNACC	1 cut(s)	109
BstF5I	GGATG	4 cut(s)	241, 443, 526, 588
BstFNI	CGCG	1 cut(s)	523
BstHHI	GCGC	1 cut(s)	525
BstKTI	GATC	2 cut(s)	419, 795
BstMAI	GTCTC	2 cut(s)	241, 852
BstMBI	GATC	2 cut(s)	416, 792
BstPI	GGTNACC	1 cut(s)	109
BstSFI	CTRYAG	2 cut(s)	48, 531
BstSLI	GKGCMC	1 cut(s)	959
BstUI	CGCG	1 cut(s)	523
BstV2I	GAAGAC	1 cut(s)	544
BstX2I	RGATCY	1 cut(s)	792
BstXI	CCANNNNNNTGG	1 cut(s)	735
BstYI	RGATCY	1 cut(s)	792
BsuRI	GGCC	1 cut(s)	823
BtsCI	GGATG	4 cut(s)	241, 443, 526, 588
BtsIMutI	CAGTG	2 cut(s)	383, 794
Cac8I	GCNNGC	2 cut(s)	535, 725
CaiI	CAGNNNCTG	1 cut(s)	584
CciI	TCATGA	1 cut(s)	42
CfoI	GCGC	1 cut(s)	525
Csp6I	GTAC	1 cut(s)	134
CspCI	CAANNNNNGTGG	2 cut(s)	257, 292
CviAII	CATG	7 cut(s)	43, 105, 252, 500, 800, 897, 976
CviQI	GTAC	1 cut(s)	134
DpnI	GATC	2 cut(s)	418, 794
DpnII	GATC	2 cut(s)	416, 792
DriI	GACNNNNNGTC	1 cut(s)	844
EaeI	YGGCCR	1 cut(s)	821
Eam1105I	GACNNNNNGTC	1 cut(s)	844
Eco130I	CCWWGG	1 cut(s)	734
Eco31I	GGTCTC	1 cut(s)	241
Eco88I	CYCGRG	1 cut(s)	64
Eco91I	GGTNACC	1 cut(s)	109
EcoO65I	GGTNACC	1 cut(s)	109
EcoRI	GAATTC	1 cut(s)	4
EcoT14I	CCWWGG	1 cut(s)	734
EcoT22I	ATGCAT	1 cut(s)	977
ErhI	CCWWGG	1 cut(s)	734
Esp3I	CGTCTC	1 cut(s)	852
FaeI	CATG	7 cut(s)	46, 108, 255, 503, 803, 900, 979
FatI	CATG	7 cut(s)	42, 104, 251, 499, 799, 896, 975
FblI	GTMKAC	1 cut(s)	883
FokI	GGATG	4 cut(s)	248, 450, 513, 575
GlaI	GCGC	1 cut(s)	524
GsaI	CCCAGC	2 cut(s)	202, 275
GsuI	CTGGAG	1 cut(s)	103
HaeIII	GGCC	1 cut(s)	823
HhaI	GCGC	1 cut(s)	525
Hin1II	CATG	7 cut(s)	46, 108, 255, 503, 803, 900, 979
Hin6I	GCGC	1 cut(s)	523
HinP1I	GCGC	1 cut(s)	523
HinfI	GANTC	3 cut(s)	124, 264, 962
HphI	GGTGA	3 cut(s)	103, 479, 716
Hpy166II	GTNNAC	3 cut(s)	381, 765, 884
Hpy188I	TCNGA	3 cut(s)	663, 743, 918
Hpy188III	TCNNGA	3 cut(s)	43, 568, 836
Hpy8I	GTNNAC	3 cut(s)	381, 765, 884
HpyAV	CCTTC	1 cut(s)	149
HpyCH4III	ACNGT	2 cut(s)	378, 602
HpyCH4V	TGCA	5 cut(s)	50, 533, 676, 889, 975
Hsp92II	CATG	7 cut(s)	46, 108, 255, 503, 803, 900, 979
HspAI	GCGC	1 cut(s)	523
Kzo9I	GATC	2 cut(s)	416, 792
LmnI	GCTCC	3 cut(s)	34, 581, 862
LweI	GCATC	2 cut(s)	169, 428
MaeIII	GTNAC	2 cut(s)	68, 109
MalI	GATC	2 cut(s)	418, 794
MboI	GATC	2 cut(s)	416, 792
MboII	GAAGA	4 cut(s)	218, 221, 544, 748
MfeI	CAATTG	1 cut(s)	216
MflI	RGATCY	1 cut(s)	792
MhlI	GDGCHC	1 cut(s)	959
MlsI	TGGCCA	1 cut(s)	823
MluCI	AATT	6 cut(s)	4, 166, 216, 561, 618, 718
MluNI	TGGCCA	1 cut(s)	823
MlyI	GAGTC	2 cut(s)	118, 956
Mox20I	TGGCCA	1 cut(s)	823
Mph1103I	ATGCAT	1 cut(s)	977
MscI	TGGCCA	1 cut(s)	823
MseI	TTAA	2 cut(s)	11, 78
MslI	CAYNNNNRTG	1 cut(s)	804
Msp20I	TGGCCA	1 cut(s)	823
MunI	CAATTG	1 cut(s)	216
MvnI	CGCG	1 cut(s)	523
NdeII	GATC	2 cut(s)	416, 792
NlaIII	CATG	7 cut(s)	46, 108, 255, 503, 803, 900, 979
NlaIV	GGNNCC	2 cut(s)	36, 355
NmuCI	GTSAC	1 cut(s)	109
NsiI	ATGCAT	1 cut(s)	977
PaeR7I	CTCGAG	1 cut(s)	64
PagI	TCATGA	1 cut(s)	42
PfeI	GAWTC	1 cut(s)	264
PflFI	GACNNNGTC	1 cut(s)	602
PflMI	CCANNNNNTGG	1 cut(s)	902
PleI	GAGTC	2 cut(s)	118, 956
PpsI	GAGTC	2 cut(s)	118, 956
PsiI	TTATAA	1 cut(s)	668
PspEI	GGTNACC	1 cut(s)	109
PspFI	CCCAGC	2 cut(s)	198, 271
PspN4I	GGNNCC	2 cut(s)	36, 355
PspXI	VCTCGAGB	1 cut(s)	64
PstI	CTGCAG	2 cut(s)	52, 535
PstNI	CAGNNNCTG	1 cut(s)	584
PsuI	RGATCY	1 cut(s)	792
PsyI	GACNNNGTC	1 cut(s)	602
RsaI	GTAC	1 cut(s)	135
RsaNI	GTAC	1 cut(s)	134
RseI	CAYNNNNRTG	1 cut(s)	804
SaqAI	TTAA	2 cut(s)	11, 78
Sau3AI	GATC	2 cut(s)	416, 792
SbfI	CCTGCAGG	1 cut(s)	535
ScaI	AGTACT	1 cut(s)	135
SchI	GAGTC	2 cut(s)	118, 956
SdaI	CCTGCAGG	1 cut(s)	535
SduI	GDGCHC	1 cut(s)	959
SetI	ASST	7 cut(s)	89, 277, 340, 499, 586, 930, 983
SfaNI	GCATC	2 cut(s)	169, 428
SfcI	CTRYAG	2 cut(s)	48, 531
Sfr274I	CTCGAG	1 cut(s)	64
SlaI	CTCGAG	1 cut(s)	64
SmiMI	CAYNNNNRTG	1 cut(s)	804
SmlI	CTYRAG	1 cut(s)	64
SmoI	CTYRAG	1 cut(s)	64
Sse8387I	CCTGCAGG	1 cut(s)	535
Sse9I	AATT	6 cut(s)	4, 166, 216, 561, 618, 718
SsiI	CCGC	1 cut(s)	521
StyI	CCWWGG	1 cut(s)	734
TaaI	ACNGT	2 cut(s)	378, 602
TaqI	TCGA	4 cut(s)	65, 170, 433, 947
TasI	AATT	6 cut(s)	4, 166, 216, 561, 618, 718
TatI	WGTACW	1 cut(s)	133
TfiI	GAWTC	1 cut(s)	264
Tru1I	TTAA	2 cut(s)	11, 78
Tru9I	TTAA	2 cut(s)	11, 78
TscAI	CASTG	2 cut(s)	383, 794
TseFI	GTSAC	1 cut(s)	109
Tsp45I	GTSAC	1 cut(s)	109
TspDTI	ATGAA	4 cut(s)	17, 252, 587, 938
TspGWI	ACGGA	1 cut(s)	840
TspRI	CASTG	2 cut(s)	383, 794
Tth111I	GACNNNGTC	1 cut(s)	602
Van91I	CCANNNNNTGG	1 cut(s)	902
XapI	RAATTY	2 cut(s)	4, 166
XhoI	CTCGAG	1 cut(s)	64
XmiI	GTMKAC	1 cut(s)	883
ZrmI	AGTACT	1 cut(s)	135
Zsp2I	ATGCAT	1 cut(s)	977

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.