Rroxscaffold_3G00262160

isoform X1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0007001
Physical Location & Seq
Forward (+)
56238513 .. 56241176
2664 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00262160.1

Sequence Viewer

Length: 1020 bp
ATGAATTCTTTAACAGGAACAAAAAGTTCTTGGGAGCCAATCATGACTGCAGATACAACAGCCTCGAGTTACTGGTTTAACTGGAGGTTTTTGCTTTGTTTTTTATGGGTCACGATCTCCCTGACTCTATCAGTACTTCTCATATTGAGATTTGAAGGGCATCAAAATTCGAGGCGTAATAATAACAGCAGAGAAACCCAGGAAGAAGAAGAAAAAACAATTGGAACTTTGTATGAGGATGAAACTTGGAGACCATGCCTCAAAGGAATCCACCCAGCTTGGCTTCTGGCTTTTAGACTTGTTGCTTTCTTCGTGCTTTTGGTTCTGCTCATCATCACAGCTTGTGTTGATGGAGGTACCATCTTTTATTTTTATACACAGTGGACATTCACATTGATTACTATTTATTTTGGGCTTGGATCATTGCTCTCTATTCGAGGATGCTACCAATACCATAAGAAAACTGCTGGTGAAAGGGTTGATAATGTAGAGTTAGATGCAGAACAGGGCACCGTAGAGAAATACATAGAACCTCATGTTGAACAACAACATCAACCGCGCCATCCTGCAGGCATTTTGGGTTATGTCTTCCAAATAATTTTCCAGATGAACGCAGGAGCTGTCATCCTCACGGACTGTGTCTTTTGGTTTGTAATTGTTCCATTTCTTACAATCAAAGATTACAACTTGAACTTTCTGATTATAAATATGCACACAATCAATGCTGTTTTCTTGCTCGGTGAAACTGCTTTGAATTGCTTGCCATTTCCTTGGTTCAGAATAGGATATTTCTTCATGTGGACAATCACTTATGTAGTTTTCCAGTGGATCTGTCATGCTTGTGTCAAACTTTGGTGGCCATATCCATTTCTGGACTTGTCGTCTCCGTATGCTCCATTATGGTATTTGTCGGTTGGTCTACTGCACTTCCCATGCTATGGCATTTTTGCTCTGATAATGAAGCTGAAACACCATCTGTTTTCGACAAAGTGCCCCGACTCTTATCAATGCATGAGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

339

Amino Acids

39.66

Weight (kDa)

6.59

Isoelectric Point (pI)

35.7

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 704
Acc65I GGTACC 1 cut(s) 356
AccB1I GGYRCC 2 cut(s) 356, 509
AccB7I CCANNNNNTGG 1 cut(s) 938
AccI GTMKAC 1 cut(s) 919
AccII CGCG 1 cut(s) 559
AciI CCGC 1 cut(s) 557
AclWI GGATC 2 cut(s) 427, 836
AcoI YGGCCR 1 cut(s) 857
AcsI RAATTY 2 cut(s) 4, 166
AfaI GTAC 2 cut(s) 135, 358
AfiI CCNNNNNNNGG 1 cut(s) 938
AgsI TTSAA 4 cut(s) 155, 542, 691, 754
AhdI GACNNNNNGTC 1 cut(s) 880
AjnI CCWGG 1 cut(s) 198
AjuI GAANNNNNNNTTGG 2 cut(s) 204, 236
AluBI AGCT 4 cut(s) 278, 341, 620, 964
AluI AGCT 4 cut(s) 278, 341, 620, 964
Alw26I GTCTC 2 cut(s) 244, 888
AlwI GGATC 2 cut(s) 427, 836
AlwNI CAGNNNCTG 1 cut(s) 620
Ama87I CYCGRG 1 cut(s) 64
AoxI GGCC 1 cut(s) 857
ApoI RAATTY 2 cut(s) 4, 166
Asp718I GGTACC 1 cut(s) 356
AspLEI GCGC 1 cut(s) 561
AsuHPI GGTGA 2 cut(s) 482, 752
AvaI CYCGRG 1 cut(s) 64
BaeGI GKGCMC 2 cut(s) 512, 995
BalI TGGCCA 1 cut(s) 859
BanI GGYRCC 2 cut(s) 356, 509
BbsI GAAGAC 1 cut(s) 580
BccI CCATC 4 cut(s) 344, 368, 570, 981
BciT130I CCWGG 1 cut(s) 200
BcoDI GTCTC 2 cut(s) 244, 888
BfmI CTRYAG 2 cut(s) 48, 567
BmcAI AGTACT 1 cut(s) 135
Bme1390I CCNGG 1 cut(s) 200
BmeRI GACNNNNNGTC 1 cut(s) 880
BmeT110I CYCGRG 1 cut(s) 64
BmiI GGNNCC 3 cut(s) 36, 358, 511
BmrFI CCNGG 1 cut(s) 200
BmsI GCATC 3 cut(s) 169, 431, 487
BpiI GAAGAC 1 cut(s) 580
BpmI CTGGAG 1 cut(s) 103
BsaI GGTCTC 1 cut(s) 244
BsaJI CCNNGG 2 cut(s) 198, 770
Bsc4I CCNNNNNNNGG 1 cut(s) 938
Bse1I ACTGG 3 cut(s) 77, 86, 823
Bse3DI GCAATG 1 cut(s) 422
BseBI CCWGG 1 cut(s) 200
BseDI CCNNGG 2 cut(s) 198, 770
BseGI GGATG 4 cut(s) 244, 446, 562, 624
BseLI CCNNNNNNNGG 1 cut(s) 938
BseMI GCAATG 1 cut(s) 422
BseNI ACTGG 3 cut(s) 77, 86, 823
BseSI GKGCMC 2 cut(s) 512, 995
BseYI CCCAGC 1 cut(s) 274
BsgI GTGCAG 1 cut(s) 908
Bsh1236I CGCG 1 cut(s) 559
BshFI GGCC 1 cut(s) 859
BshNI GGYRCC 2 cut(s) 356, 509
BsiHKCI CYCGRG 1 cut(s) 64
BslI CCNNNNNNNGG 1 cut(s) 938
BsmAI GTCTC 2 cut(s) 244, 888
BsmBI CGTCTC 1 cut(s) 888
BsnI GGCC 1 cut(s) 859
Bso31I GGTCTC 1 cut(s) 244
BsoBI CYCGRG 1 cut(s) 64
Bsp1286I GDGCHC 2 cut(s) 512, 995
Bsp143I GATC 3 cut(s) 114, 419, 828
BspACI CCGC 1 cut(s) 557
BspANI GGCC 1 cut(s) 859
BspFNI CGCG 1 cut(s) 559
BspHI TCATGA 1 cut(s) 42
BspLI GGNNCC 3 cut(s) 36, 358, 511
BspMAI CTGCAG 2 cut(s) 52, 571
BspPI GGATC 2 cut(s) 427, 836
BspT107I GGYRCC 2 cut(s) 356, 509
BspTNI GGTCTC 1 cut(s) 244
BsrDI GCAATG 1 cut(s) 422
BsrI ACTGG 3 cut(s) 77, 86, 823
BssECI CCNNGG 2 cut(s) 198, 770
BssMI GATC 3 cut(s) 114, 419, 828
BssT1I CCWWGG 1 cut(s) 770
Bst2UI CCWGG 1 cut(s) 200
Bst4CI ACNGT 3 cut(s) 381, 514, 638
BstC8I GCNNGC 2 cut(s) 571, 761
BstF5I GGATG 4 cut(s) 244, 446, 562, 624
BstFNI CGCG 1 cut(s) 559
BstHHI GCGC 1 cut(s) 561
BstKTI GATC 3 cut(s) 117, 422, 831
BstMAI GTCTC 2 cut(s) 244, 888
BstMBI GATC 3 cut(s) 114, 419, 828
BstNI CCWGG 1 cut(s) 200
BstSCI CCNGG 1 cut(s) 198
BstSFI CTRYAG 2 cut(s) 48, 567
BstSLI GKGCMC 2 cut(s) 512, 995
BstUI CGCG 1 cut(s) 559
BstV2I GAAGAC 1 cut(s) 580
BstX2I RGATCY 1 cut(s) 828
BstXI CCANNNNNNTGG 1 cut(s) 771
BstYI RGATCY 1 cut(s) 828
BsuRI GGCC 1 cut(s) 859
BtsCI GGATG 4 cut(s) 244, 446, 562, 624
BtsIMutI CAGTG 2 cut(s) 386, 830
Cac8I GCNNGC 2 cut(s) 571, 761
CaiI CAGNNNCTG 1 cut(s) 620
CciI TCATGA 1 cut(s) 42
CfoI GCGC 1 cut(s) 561
Csp6I GTAC 2 cut(s) 134, 357
CspCI CAANNNNNGTGG 2 cut(s) 260, 295
CviAII CATG 7 cut(s) 43, 255, 536, 796, 836, 933, 1012
CviQI GTAC 2 cut(s) 134, 357
DpnI GATC 3 cut(s) 116, 421, 830
DpnII GATC 3 cut(s) 114, 419, 828
DriI GACNNNNNGTC 1 cut(s) 880
EaeI YGGCCR 1 cut(s) 857
Eam1105I GACNNNNNGTC 1 cut(s) 880
Eco130I CCWWGG 1 cut(s) 770
Eco31I GGTCTC 1 cut(s) 244
Eco88I CYCGRG 1 cut(s) 64
EcoRI GAATTC 1 cut(s) 4
EcoRII CCWGG 1 cut(s) 198
EcoT14I CCWWGG 1 cut(s) 770
EcoT22I ATGCAT 1 cut(s) 1013
ErhI CCWWGG 1 cut(s) 770
Esp3I CGTCTC 1 cut(s) 888
FaeI CATG 7 cut(s) 46, 258, 539, 799, 839, 936, 1015
FatI CATG 7 cut(s) 42, 254, 535, 795, 835, 932, 1011
FblI GTMKAC 1 cut(s) 919
FokI GGATG 4 cut(s) 251, 453, 549, 611
GlaI GCGC 1 cut(s) 560
GsaI CCCAGC 1 cut(s) 278
GsuI CTGGAG 1 cut(s) 103
HaeIII GGCC 1 cut(s) 859
HhaI GCGC 1 cut(s) 561
Hin1II CATG 7 cut(s) 46, 258, 539, 799, 839, 936, 1015
Hin6I GCGC 1 cut(s) 559
HinP1I GCGC 1 cut(s) 559
HinfI GANTC 3 cut(s) 124, 267, 998
HphI GGTGA 2 cut(s) 482, 752
Hpy166II GTNNAC 3 cut(s) 384, 801, 920
Hpy188I TCNGA 3 cut(s) 699, 779, 954
Hpy188III TCNNGA 4 cut(s) 43, 112, 604, 872
Hpy8I GTNNAC 3 cut(s) 384, 801, 920
HpyAV CCTTC 1 cut(s) 149
HpyCH4III ACNGT 3 cut(s) 381, 514, 638
HpyCH4V TGCA 6 cut(s) 50, 500, 569, 712, 925, 1011
Hsp92II CATG 7 cut(s) 46, 258, 539, 799, 839, 936, 1015
HspAI GCGC 1 cut(s) 559
KpnI GGTACC 1 cut(s) 360
Kzo9I GATC 3 cut(s) 114, 419, 828
LmnI GCTCC 3 cut(s) 34, 617, 898
LweI GCATC 3 cut(s) 169, 431, 487
MaeIII GTNAC 2 cut(s) 68, 109
MalI GATC 3 cut(s) 116, 421, 830
MboI GATC 3 cut(s) 114, 419, 828
MboII GAAGA 6 cut(s) 215, 218, 221, 301, 580, 784
MfeI CAATTG 1 cut(s) 219
MflI RGATCY 1 cut(s) 828
MhlI GDGCHC 2 cut(s) 512, 995
MlsI TGGCCA 1 cut(s) 859
MluCI AATT 6 cut(s) 4, 166, 219, 597, 654, 754
MluNI TGGCCA 1 cut(s) 859
MlyI GAGTC 2 cut(s) 118, 992
Mox20I TGGCCA 1 cut(s) 859
Mph1103I ATGCAT 1 cut(s) 1013
MscI TGGCCA 1 cut(s) 859
MseI TTAA 2 cut(s) 11, 78
MslI CAYNNNNRTG 1 cut(s) 840
Msp20I TGGCCA 1 cut(s) 859
MspR9I CCNGG 1 cut(s) 200
MunI CAATTG 1 cut(s) 219
MvaI CCWGG 1 cut(s) 200
MvnI CGCG 1 cut(s) 559
NdeII GATC 3 cut(s) 114, 419, 828
NlaIII CATG 7 cut(s) 46, 258, 539, 799, 839, 936, 1015
NlaIV GGNNCC 3 cut(s) 36, 358, 511
NmuCI GTSAC 1 cut(s) 109
NsiI ATGCAT 1 cut(s) 1013
PaeR7I CTCGAG 1 cut(s) 64
PagI TCATGA 1 cut(s) 42
PfeI GAWTC 1 cut(s) 267
PflFI GACNNNGTC 1 cut(s) 638
PflMI CCANNNNNTGG 1 cut(s) 938
PleI GAGTC 2 cut(s) 118, 992
PpsI GAGTC 2 cut(s) 118, 992
PsiI TTATAA 1 cut(s) 704
Psp6I CCWGG 1 cut(s) 198
PspFI CCCAGC 1 cut(s) 274
PspGI CCWGG 1 cut(s) 198
PspN4I GGNNCC 3 cut(s) 36, 358, 511
PspXI VCTCGAGB 1 cut(s) 64
PstI CTGCAG 2 cut(s) 52, 571
PstNI CAGNNNCTG 1 cut(s) 620
PsuI RGATCY 1 cut(s) 828
PsyI GACNNNGTC 1 cut(s) 638
RsaI GTAC 2 cut(s) 135, 358
RsaNI GTAC 2 cut(s) 134, 357
RseI CAYNNNNRTG 1 cut(s) 840
SaqAI TTAA 2 cut(s) 11, 78
Sau3AI GATC 3 cut(s) 114, 419, 828
SbfI CCTGCAGG 1 cut(s) 571
ScaI AGTACT 1 cut(s) 135
SchI GAGTC 2 cut(s) 118, 992
ScrFI CCNGG 1 cut(s) 200
SdaI CCTGCAGG 1 cut(s) 571
SduI GDGCHC 2 cut(s) 512, 995
SetI ASST 8 cut(s) 89, 280, 343, 358, 535, 622, 966, 1019
SfaNI GCATC 3 cut(s) 169, 431, 487
SfcI CTRYAG 2 cut(s) 48, 567
Sfr274I CTCGAG 1 cut(s) 64
SlaI CTCGAG 1 cut(s) 64
SmiMI CAYNNNNRTG 1 cut(s) 840
SmlI CTYRAG 1 cut(s) 64
SmoI CTYRAG 1 cut(s) 64
Sse8387I CCTGCAGG 1 cut(s) 571
Sse9I AATT 6 cut(s) 4, 166, 219, 597, 654, 754
SsiI CCGC 1 cut(s) 557
StyD4I CCNGG 1 cut(s) 198
StyI CCWWGG 1 cut(s) 770
TaaI ACNGT 3 cut(s) 381, 514, 638
TaqI TCGA 4 cut(s) 65, 170, 436, 983
TasI AATT 6 cut(s) 4, 166, 219, 597, 654, 754
TatI WGTACW 1 cut(s) 133
TfiI GAWTC 1 cut(s) 267
Tru1I TTAA 2 cut(s) 11, 78
Tru9I TTAA 2 cut(s) 11, 78
TscAI CASTG 2 cut(s) 386, 830
TseFI GTSAC 1 cut(s) 109
Tsp45I GTSAC 1 cut(s) 109
TspDTI ATGAA 5 cut(s) 17, 255, 623, 784, 974
TspGWI ACGGA 2 cut(s) 647, 876
TspRI CASTG 2 cut(s) 386, 830
Tth111I GACNNNGTC 1 cut(s) 638
Van91I CCANNNNNTGG 1 cut(s) 938
XapI RAATTY 2 cut(s) 4, 166
XhoI CTCGAG 1 cut(s) 64
XmiI GTMKAC 1 cut(s) 919
ZrmI AGTACT 1 cut(s) 135
Zsp2I ATGCAT 1 cut(s) 1013
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.