RLG00000004274

isoform X1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0007001
Physical Location & Seq
Forward (+)
57928368 .. 57931107
2740 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000004274

Sequence Viewer

Length: 969 bp
ATGGAGATTGAGACTGCTAAGGACTTTGCTCTCTCCATTTCAAAGAAGCAACGCATCTCCTCCCTCCCTCATTTCTCTTGCTTTCCCTTGAACAAAAAGTTCTTGGGAGCCAATCATGACTGCAGATACAACAGCCTCGAAGAAGCCCAGGAAGAAGAAGAAGAAACAATTGGAACTTTGTATGAGGATGAAACTTGGAGACCATGCCTCAAAGGAATCCACCCAGCTTGGCTTCTGGCTTTTAGACTTGTTGCTTTCTTTGTGCTTTTGGTTCTCCTCATCATCACAGCTTGTGTTGATGGAGGTACCATCTTTTATTTTTATACACAGTGGACATTCACATTGGTTACTATTTATTTTGGGCTTGGATCATTGCTCTCTATTCGAGGATGCTACCAATACCATAAGAAAACTGCTGGTGAAAGGGTTGATAATGTAGAGTTAGATGCAGAACAGGGCACCATAGAGAAATACAGAGAACCTCATGTTGAACAACAACATCAACCGCGCCATCCTGCAGGCATTTTGGGTTATATCTTCCAAATAATTTTCCAGATGAACGCAGGAGCTGTCATCCTCACGGACTGTGTCTTTTGGTTTGTAATTGTTCCATTTCTTACAATCAAAGATTACAACTTGAACTTTCTGATTATAAATATGCACACGATCAATGCTGTTTTCTTGCTCGGTGAAACTGCTTTGAATTGCTTGCGATTTCCTTGGTTCAGAATAGGATATTTCTTCATGTGGACTATCACTTACGTAGTTTTCCAGTGGATCTGTCATGCTTGTGTCAAACTTTGGTGGCCATATCCATTTCTGGACTTGTCGTCTCCGTATGCTCCATTATGGTACTTGTCGGTTGGTCTACTGCACTTCCCATGCTATGGCATTTTTACTCTGATAATGAAGCTGAAACACCATCTGTTTTCGACAAAGTGCCCCGACTCTTATCAATGCATGAGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

323

Amino Acids

37.68

Weight (kDa)

6.45

Isoelectric Point (pI)

38.55

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 653
Acc65I GGTACC 1 cut(s) 305
AccB1I GGYRCC 2 cut(s) 305, 458
AccB7I CCANNNNNTGG 1 cut(s) 887
AccI GTMKAC 1 cut(s) 868
AccII CGCG 1 cut(s) 508
AciI CCGC 1 cut(s) 506
AclWI GGATC 2 cut(s) 376, 785
AcoI YGGCCR 1 cut(s) 806
AfaI GTAC 2 cut(s) 307, 854
AfiI CCNNNNNNNGG 1 cut(s) 887
AgsI TTSAA 5 cut(s) 42, 91, 491, 640, 703
AhdI GACNNNNNGTC 1 cut(s) 829
AjnI CCWGG 1 cut(s) 147
AjuI GAANNNNNNNTTGG 2 cut(s) 153, 185
AluBI AGCT 4 cut(s) 227, 290, 569, 913
AluI AGCT 4 cut(s) 227, 290, 569, 913
Alw26I GTCTC 3 cut(s) 5, 193, 837
AlwI GGATC 2 cut(s) 376, 785
AlwNI CAGNNNCTG 1 cut(s) 569
AoxI GGCC 1 cut(s) 806
Asp718I GGTACC 1 cut(s) 305
AspLEI GCGC 1 cut(s) 510
AsuHPI GGTGA 2 cut(s) 431, 701
BaeGI GKGCMC 2 cut(s) 461, 944
BalI TGGCCA 1 cut(s) 808
BanI GGYRCC 2 cut(s) 305, 458
BccI CCATC 4 cut(s) 293, 317, 519, 930
BciT130I CCWGG 1 cut(s) 149
BcoDI GTCTC 3 cut(s) 5, 193, 837
BfmI CTRYAG 2 cut(s) 121, 516
Bme1390I CCNGG 1 cut(s) 149
BmeRI GACNNNNNGTC 1 cut(s) 829
BmiI GGNNCC 3 cut(s) 109, 307, 460
BmrFI CCNGG 1 cut(s) 149
BmsI GCATC 3 cut(s) 63, 380, 436
Bpu10I CCTNAGC 1 cut(s) 18
BsaAI YACGTR 1 cut(s) 763
BsaI GGTCTC 1 cut(s) 193
BsaJI CCNNGG 2 cut(s) 147, 719
Bsc4I CCNNNNNNNGG 1 cut(s) 887
Bse1I ACTGG 1 cut(s) 772
Bse3DI GCAATG 1 cut(s) 371
BseBI CCWGG 1 cut(s) 149
BseDI CCNNGG 2 cut(s) 147, 719
BseGI GGATG 4 cut(s) 193, 395, 511, 573
BseLI CCNNNNNNNGG 1 cut(s) 887
BseMI GCAATG 1 cut(s) 371
BseNI ACTGG 1 cut(s) 772
BseRI GAGGAG 2 cut(s) 49, 266
BseSI GKGCMC 2 cut(s) 461, 944
BseYI CCCAGC 1 cut(s) 223
BsgI GTGCAG 1 cut(s) 857
Bsh1236I CGCG 1 cut(s) 508
BshFI GGCC 1 cut(s) 808
BshNI GGYRCC 2 cut(s) 305, 458
BslI CCNNNNNNNGG 1 cut(s) 887
BsmAI GTCTC 3 cut(s) 5, 193, 837
BsmBI CGTCTC 1 cut(s) 837
BsnI GGCC 1 cut(s) 808
Bso31I GGTCTC 1 cut(s) 193
Bsp1286I GDGCHC 2 cut(s) 461, 944
Bsp143I GATC 3 cut(s) 368, 666, 777
BspACI CCGC 1 cut(s) 506
BspANI GGCC 1 cut(s) 808
BspFNI CGCG 1 cut(s) 508
BspHI TCATGA 1 cut(s) 115
BspLI GGNNCC 3 cut(s) 109, 307, 460
BspMAI CTGCAG 2 cut(s) 125, 520
BspPI GGATC 2 cut(s) 376, 785
BspT107I GGYRCC 2 cut(s) 305, 458
BspTNI GGTCTC 1 cut(s) 193
BsrDI GCAATG 1 cut(s) 371
BsrI ACTGG 1 cut(s) 772
BssECI CCNNGG 2 cut(s) 147, 719
BssMI GATC 3 cut(s) 368, 666, 777
BssT1I CCWWGG 1 cut(s) 719
Bst2UI CCWGG 1 cut(s) 149
Bst4CI ACNGT 2 cut(s) 330, 587
BstBAI YACGTR 1 cut(s) 763
BstC8I GCNNGC 2 cut(s) 520, 710
BstDEI CTNAG 1 cut(s) 18
BstF5I GGATG 4 cut(s) 193, 395, 511, 573
BstFNI CGCG 1 cut(s) 508
BstHHI GCGC 1 cut(s) 510
BstKTI GATC 3 cut(s) 371, 669, 780
BstMAI GTCTC 3 cut(s) 5, 193, 837
BstMBI GATC 3 cut(s) 368, 666, 777
BstNI CCWGG 1 cut(s) 149
BstSCI CCNGG 1 cut(s) 147
BstSFI CTRYAG 2 cut(s) 121, 516
BstSLI GKGCMC 2 cut(s) 461, 944
BstSNI TACGTA 1 cut(s) 763
BstUI CGCG 1 cut(s) 508
BstX2I RGATCY 1 cut(s) 777
BstYI RGATCY 1 cut(s) 777
BsuRI GGCC 1 cut(s) 808
BtsCI GGATG 4 cut(s) 193, 395, 511, 573
BtsIMutI CAGTG 2 cut(s) 335, 779
Cac8I GCNNGC 2 cut(s) 520, 710
CaiI CAGNNNCTG 1 cut(s) 569
CciI TCATGA 1 cut(s) 115
CfoI GCGC 1 cut(s) 510
Csp6I GTAC 2 cut(s) 306, 853
CspCI CAANNNNNGTGG 2 cut(s) 209, 244
CviAII CATG 7 cut(s) 116, 204, 485, 745, 785, 882, 961
CviQI GTAC 2 cut(s) 306, 853
DdeI CTNAG 1 cut(s) 18
DpnI GATC 3 cut(s) 370, 668, 779
DpnII GATC 3 cut(s) 368, 666, 777
DriI GACNNNNNGTC 1 cut(s) 829
EaeI YGGCCR 1 cut(s) 806
Eam1105I GACNNNNNGTC 1 cut(s) 829
Eco105I TACGTA 1 cut(s) 763
Eco130I CCWWGG 1 cut(s) 719
Eco31I GGTCTC 1 cut(s) 193
EcoRII CCWGG 1 cut(s) 147
EcoT14I CCWWGG 1 cut(s) 719
EcoT22I ATGCAT 1 cut(s) 962
ErhI CCWWGG 1 cut(s) 719
Esp3I CGTCTC 1 cut(s) 837
FaeI CATG 7 cut(s) 119, 207, 488, 748, 788, 885, 964
FatI CATG 7 cut(s) 115, 203, 484, 744, 784, 881, 960
FblI GTMKAC 1 cut(s) 868
FokI GGATG 4 cut(s) 200, 402, 498, 560
GlaI GCGC 1 cut(s) 509
GsaI CCCAGC 1 cut(s) 227
HaeIII GGCC 1 cut(s) 808
HhaI GCGC 1 cut(s) 510
Hin1II CATG 7 cut(s) 119, 207, 488, 748, 788, 885, 964
Hin6I GCGC 1 cut(s) 508
HinP1I GCGC 1 cut(s) 508
HinfI GANTC 2 cut(s) 216, 947
HphI GGTGA 2 cut(s) 431, 701
Hpy166II GTNNAC 3 cut(s) 333, 750, 869
Hpy188I TCNGA 3 cut(s) 648, 728, 903
Hpy188III TCNNGA 3 cut(s) 116, 553, 821
Hpy8I GTNNAC 3 cut(s) 333, 750, 869
HpyCH4III ACNGT 2 cut(s) 330, 587
HpyCH4IV ACGT 1 cut(s) 762
HpyCH4V TGCA 6 cut(s) 123, 449, 518, 661, 874, 960
HpyF3I CTNAG 1 cut(s) 18
HpySE526I ACGT 1 cut(s) 762
Hsp92II CATG 7 cut(s) 119, 207, 488, 748, 788, 885, 964
HspAI GCGC 1 cut(s) 508
KpnI GGTACC 1 cut(s) 309
Kzo9I GATC 3 cut(s) 368, 666, 777
LmnI GCTCC 3 cut(s) 107, 566, 847
LweI GCATC 3 cut(s) 63, 380, 436
MaeII ACGT 1 cut(s) 762
MaeIII GTNAC 1 cut(s) 346
MalI GATC 3 cut(s) 370, 668, 779
MboI GATC 3 cut(s) 368, 666, 777
MboII GAAGA 7 cut(s) 152, 164, 167, 170, 173, 529, 733
MfeI CAATTG 1 cut(s) 168
MflI RGATCY 1 cut(s) 777
MhlI GDGCHC 2 cut(s) 461, 944
MlsI TGGCCA 1 cut(s) 808
MluCI AATT 4 cut(s) 168, 546, 603, 703
MluNI TGGCCA 1 cut(s) 808
MlyI GAGTC 1 cut(s) 941
Mox20I TGGCCA 1 cut(s) 808
Mph1103I ATGCAT 1 cut(s) 962
MscI TGGCCA 1 cut(s) 808
MslI CAYNNNNRTG 1 cut(s) 789
Msp20I TGGCCA 1 cut(s) 808
MspR9I CCNGG 1 cut(s) 149
MunI CAATTG 1 cut(s) 168
MvaI CCWGG 1 cut(s) 149
MvnI CGCG 1 cut(s) 508
NdeII GATC 3 cut(s) 368, 666, 777
NlaIII CATG 7 cut(s) 119, 207, 488, 748, 788, 885, 964
NlaIV GGNNCC 3 cut(s) 109, 307, 460
NsiI ATGCAT 1 cut(s) 962
PagI TCATGA 1 cut(s) 115
PfeI GAWTC 1 cut(s) 216
PflFI GACNNNGTC 1 cut(s) 587
PflMI CCANNNNNTGG 1 cut(s) 887
PleI GAGTC 1 cut(s) 941
PpsI GAGTC 1 cut(s) 941
Ppu21I YACGTR 1 cut(s) 763
PsiI TTATAA 1 cut(s) 653
Psp6I CCWGG 1 cut(s) 147
PspFI CCCAGC 1 cut(s) 223
PspGI CCWGG 1 cut(s) 147
PspN4I GGNNCC 3 cut(s) 109, 307, 460
PstI CTGCAG 2 cut(s) 125, 520
PstNI CAGNNNCTG 1 cut(s) 569
PsuI RGATCY 1 cut(s) 777
PsyI GACNNNGTC 1 cut(s) 587
RsaI GTAC 2 cut(s) 307, 854
RsaNI GTAC 2 cut(s) 306, 853
RseI CAYNNNNRTG 1 cut(s) 789
Sau3AI GATC 3 cut(s) 368, 666, 777
SbfI CCTGCAGG 1 cut(s) 520
SchI GAGTC 1 cut(s) 941
ScrFI CCNGG 1 cut(s) 149
SdaI CCTGCAGG 1 cut(s) 520
SduI GDGCHC 2 cut(s) 461, 944
SetI ASST 8 cut(s) 229, 292, 307, 484, 571, 765, 915, 968
SfaNI GCATC 3 cut(s) 63, 380, 436
SfcI CTRYAG 2 cut(s) 121, 516
SmiMI CAYNNNNRTG 1 cut(s) 789
SnaBI TACGTA 1 cut(s) 763
Sse8387I CCTGCAGG 1 cut(s) 520
Sse9I AATT 4 cut(s) 168, 546, 603, 703
SsiI CCGC 1 cut(s) 506
StyD4I CCNGG 1 cut(s) 147
StyI CCWWGG 1 cut(s) 719
TaaI ACNGT 2 cut(s) 330, 587
TaiI ACGT 1 cut(s) 765
TaqI TCGA 3 cut(s) 138, 385, 932
TasI AATT 4 cut(s) 168, 546, 603, 703
TfiI GAWTC 1 cut(s) 216
TscAI CASTG 2 cut(s) 335, 779
TspDTI ATGAA 4 cut(s) 204, 572, 733, 923
TspGWI ACGGA 2 cut(s) 596, 825
TspRI CASTG 2 cut(s) 335, 779
Tth111I GACNNNGTC 1 cut(s) 587
Van91I CCANNNNNTGG 1 cut(s) 887
XmiI GTMKAC 1 cut(s) 868
Zsp2I ATGCAT 1 cut(s) 962
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.