RchiOBHm_Chr7g0193381

isoform X1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0007001
Physical Location & Seq
Reverse (-)
11711211 .. 11715174
3964 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ17292

Sequence Viewer

Length: 1017 bp
ATGAATTCTTTAACAGGAACAAAAAGTTCTTGGGAGCCAATCATGACTGCAGATACAACAGCCTCGAGTTACTGGTTTAACTGGAGGTTTTTGCTTTGTTTTACATGGGTCACCATCTCCCTGACTCTTTCAGTACTTCTCATATTGAGATTTGAAGGGCATCAAAATTCGAGGCGTAGTAATAACAGCAGAGAAACCCAGCAAGAAGAAGAAACAATTGGAACTTTGTATGAGGATGAAACTTGGAGACCATGCCTCAAAGGAATCCACCCAGCTTGGCTTCTGGCTTTTAGACTTGTTGCTTTCTTTGTGCTTTTGGTTCTGCTCATCATCACAGCTTGTGTTGATGGAGGCACCATCTTTTATTTTTATACACAGTGGACATTCACATTGATTACTATTTATTTTGGGCTTGGATCATTGCTCTCTATTCGAGGATGCTACCAATACCATAAGAAAACTGCTGGTGAAAGGGTTGATAATGTAGAGCTAGATGCAGAACAGGGCACCGAAGAGAAATACATAGAACCTCATGTTGAACAACAACATCAACCGCGCCATCCTGCAGGCATTTTGGGTTATGTCTTCCAAATAATTTTCCAGATGAACGCAGGAGCTGTCATCCTCACAGACTGTGTCTTTTGGTTTGTAATTGTTCCATTTCTTACAATCAAAGATTACAACTTGAACTTTCTGATTATAAATATGCACACAATCAATGCTGTTTTCTTGCTCGGTGAAACTGCTTTGAATTGCTTGCCATTTCCTTGGTTCAGAATAGGATATTTCTTCGTGTGGACTACCACTTATGTAGTTTTCCAGTGGATCTGTCATGCTTGTGTCAAACTTTGGTGGCCATATCCATTTCTGGACTTGTCGTCTCCGTATGCTCCATTATGGTATTTGTCTGTTGGTCTACTGCACTTCCCATGCTATGGCATTTTTGCTCTGATAATGAAGCTGAAACACCATCTGTTTTCGACAAAGTGCCCCGACTCTTATCAATGCATGAGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

338

Amino Acids

39.48

Weight (kDa)

6.4

Isoelectric Point (pI)

36.71

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 701
AccB1I GGYRCC 2 cut(s) 353, 506
AccB7I CCANNNNNTGG 1 cut(s) 935
AccI GTMKAC 1 cut(s) 916
AccII CGCG 1 cut(s) 556
AciI CCGC 1 cut(s) 554
AclWI GGATC 2 cut(s) 424, 833
AcoI YGGCCR 1 cut(s) 854
AcsI RAATTY 2 cut(s) 4, 166
AfaI GTAC 1 cut(s) 135
AfiI CCNNNNNNNGG 1 cut(s) 935
AgsI TTSAA 4 cut(s) 155, 539, 688, 751
AhdI GACNNNNNGTC 1 cut(s) 877
AjuI GAANNNNNNNTTGG 2 cut(s) 201, 233
AluBI AGCT 5 cut(s) 275, 338, 490, 617, 961
AluI AGCT 5 cut(s) 275, 338, 490, 617, 961
Alw26I GTCTC 2 cut(s) 241, 885
AlwI GGATC 2 cut(s) 424, 833
AlwNI CAGNNNCTG 1 cut(s) 617
Ama87I CYCGRG 1 cut(s) 64
AoxI GGCC 1 cut(s) 854
ApoI RAATTY 2 cut(s) 4, 166
AspLEI GCGC 1 cut(s) 558
AsuHPI GGTGA 3 cut(s) 103, 479, 749
AvaI CYCGRG 1 cut(s) 64
BaeGI GKGCMC 2 cut(s) 509, 992
BalI TGGCCA 1 cut(s) 856
BanI GGYRCC 2 cut(s) 353, 506
BbsI GAAGAC 1 cut(s) 577
BccI CCATC 5 cut(s) 122, 341, 365, 567, 978
BcoDI GTCTC 2 cut(s) 241, 885
BfaI CTAG 1 cut(s) 491
BfmI CTRYAG 2 cut(s) 48, 564
BmcAI AGTACT 1 cut(s) 135
BmeRI GACNNNNNGTC 1 cut(s) 877
BmeT110I CYCGRG 1 cut(s) 64
BmiI GGNNCC 3 cut(s) 36, 355, 508
BmsI GCATC 3 cut(s) 169, 428, 484
BpiI GAAGAC 1 cut(s) 577
BpmI CTGGAG 1 cut(s) 103
BsaI GGTCTC 1 cut(s) 241
BsaJI CCNNGG 1 cut(s) 767
Bsc4I CCNNNNNNNGG 1 cut(s) 935
Bse1I ACTGG 3 cut(s) 77, 86, 820
Bse3DI GCAATG 1 cut(s) 419
BseDI CCNNGG 1 cut(s) 767
BseGI GGATG 4 cut(s) 241, 443, 559, 621
BseLI CCNNNNNNNGG 1 cut(s) 935
BseMI GCAATG 1 cut(s) 419
BseNI ACTGG 3 cut(s) 77, 86, 820
BseSI GKGCMC 2 cut(s) 509, 992
BseYI CCCAGC 2 cut(s) 198, 271
BsgI GTGCAG 1 cut(s) 905
Bsh1236I CGCG 1 cut(s) 556
BshFI GGCC 1 cut(s) 856
BshNI GGYRCC 2 cut(s) 353, 506
BsiHKCI CYCGRG 1 cut(s) 64
BslI CCNNNNNNNGG 1 cut(s) 935
BsmAI GTCTC 2 cut(s) 241, 885
BsmBI CGTCTC 1 cut(s) 885
BsnI GGCC 1 cut(s) 856
Bso31I GGTCTC 1 cut(s) 241
BsoBI CYCGRG 1 cut(s) 64
Bsp1286I GDGCHC 2 cut(s) 509, 992
Bsp143I GATC 2 cut(s) 416, 825
BspACI CCGC 1 cut(s) 554
BspANI GGCC 1 cut(s) 856
BspFNI CGCG 1 cut(s) 556
BspHI TCATGA 1 cut(s) 42
BspLI GGNNCC 3 cut(s) 36, 355, 508
BspMAI CTGCAG 2 cut(s) 52, 568
BspPI GGATC 2 cut(s) 424, 833
BspT107I GGYRCC 2 cut(s) 353, 506
BspTNI GGTCTC 1 cut(s) 241
BsrDI GCAATG 1 cut(s) 419
BsrI ACTGG 3 cut(s) 77, 86, 820
BssECI CCNNGG 1 cut(s) 767
BssMI GATC 2 cut(s) 416, 825
BssT1I CCWWGG 1 cut(s) 767
Bst4CI ACNGT 2 cut(s) 378, 635
Bst6I CTCTTC 1 cut(s) 507
BstC8I GCNNGC 2 cut(s) 568, 758
BstEII GGTNACC 1 cut(s) 109
BstF5I GGATG 4 cut(s) 241, 443, 559, 621
BstFNI CGCG 1 cut(s) 556
BstHHI GCGC 1 cut(s) 558
BstKTI GATC 2 cut(s) 419, 828
BstMAI GTCTC 2 cut(s) 241, 885
BstMBI GATC 2 cut(s) 416, 825
BstPI GGTNACC 1 cut(s) 109
BstSFI CTRYAG 2 cut(s) 48, 564
BstSLI GKGCMC 2 cut(s) 509, 992
BstUI CGCG 1 cut(s) 556
BstV2I GAAGAC 1 cut(s) 577
BstX2I RGATCY 1 cut(s) 825
BstXI CCANNNNNNTGG 1 cut(s) 768
BstYI RGATCY 1 cut(s) 825
BsuRI GGCC 1 cut(s) 856
BtsCI GGATG 4 cut(s) 241, 443, 559, 621
BtsIMutI CAGTG 2 cut(s) 383, 827
Cac8I GCNNGC 2 cut(s) 568, 758
CaiI CAGNNNCTG 1 cut(s) 617
CciI TCATGA 1 cut(s) 42
CfoI GCGC 1 cut(s) 558
Csp6I GTAC 1 cut(s) 134
CspCI CAANNNNNGTGG 2 cut(s) 257, 292
CviAII CATG 7 cut(s) 43, 105, 252, 533, 833, 930, 1009
CviQI GTAC 1 cut(s) 134
DpnI GATC 2 cut(s) 418, 827
DpnII GATC 2 cut(s) 416, 825
DriI GACNNNNNGTC 1 cut(s) 877
EaeI YGGCCR 1 cut(s) 854
Eam1104I CTCTTC 1 cut(s) 507
Eam1105I GACNNNNNGTC 1 cut(s) 877
EarI CTCTTC 1 cut(s) 507
Eco130I CCWWGG 1 cut(s) 767
Eco31I GGTCTC 1 cut(s) 241
Eco88I CYCGRG 1 cut(s) 64
Eco91I GGTNACC 1 cut(s) 109
EcoO65I GGTNACC 1 cut(s) 109
EcoRI GAATTC 1 cut(s) 4
EcoT14I CCWWGG 1 cut(s) 767
EcoT22I ATGCAT 1 cut(s) 1010
ErhI CCWWGG 1 cut(s) 767
Esp3I CGTCTC 1 cut(s) 885
FaeI CATG 7 cut(s) 46, 108, 255, 536, 836, 933, 1012
FatI CATG 7 cut(s) 42, 104, 251, 532, 832, 929, 1008
FblI GTMKAC 1 cut(s) 916
FokI GGATG 4 cut(s) 248, 450, 546, 608
FspBI CTAG 1 cut(s) 491
GlaI GCGC 1 cut(s) 557
GsaI CCCAGC 2 cut(s) 202, 275
GsuI CTGGAG 1 cut(s) 103
HaeIII GGCC 1 cut(s) 856
HhaI GCGC 1 cut(s) 558
Hin1II CATG 7 cut(s) 46, 108, 255, 536, 836, 933, 1012
Hin6I GCGC 1 cut(s) 556
HinP1I GCGC 1 cut(s) 556
HinfI GANTC 3 cut(s) 124, 264, 995
HphI GGTGA 3 cut(s) 103, 479, 749
Hpy166II GTNNAC 3 cut(s) 381, 798, 917
Hpy188I TCNGA 3 cut(s) 696, 776, 951
Hpy188III TCNNGA 3 cut(s) 43, 601, 869
Hpy8I GTNNAC 3 cut(s) 381, 798, 917
HpyAV CCTTC 1 cut(s) 149
HpyCH4III ACNGT 2 cut(s) 378, 635
HpyCH4V TGCA 6 cut(s) 50, 497, 566, 709, 922, 1008
Hsp92II CATG 7 cut(s) 46, 108, 255, 536, 836, 933, 1012
HspAI GCGC 1 cut(s) 556
Kzo9I GATC 2 cut(s) 416, 825
LmnI GCTCC 3 cut(s) 34, 614, 895
LweI GCATC 3 cut(s) 169, 428, 484
MaeI CTAG 1 cut(s) 491
MaeIII GTNAC 2 cut(s) 68, 109
MalI GATC 2 cut(s) 418, 827
MboI GATC 2 cut(s) 416, 825
MboII GAAGA 5 cut(s) 218, 221, 524, 577, 781
MfeI CAATTG 1 cut(s) 216
MflI RGATCY 1 cut(s) 825
MhlI GDGCHC 2 cut(s) 509, 992
MlsI TGGCCA 1 cut(s) 856
MluCI AATT 6 cut(s) 4, 166, 216, 594, 651, 751
MluNI TGGCCA 1 cut(s) 856
MlyI GAGTC 2 cut(s) 118, 989
Mox20I TGGCCA 1 cut(s) 856
Mph1103I ATGCAT 1 cut(s) 1010
MscI TGGCCA 1 cut(s) 856
MseI TTAA 2 cut(s) 11, 78
MslI CAYNNNNRTG 1 cut(s) 837
Msp20I TGGCCA 1 cut(s) 856
MunI CAATTG 1 cut(s) 216
MvnI CGCG 1 cut(s) 556
NdeII GATC 2 cut(s) 416, 825
NlaIII CATG 7 cut(s) 46, 108, 255, 536, 836, 933, 1012
NlaIV GGNNCC 3 cut(s) 36, 355, 508
NmuCI GTSAC 1 cut(s) 109
NsiI ATGCAT 1 cut(s) 1010
PaeR7I CTCGAG 1 cut(s) 64
PagI TCATGA 1 cut(s) 42
PfeI GAWTC 1 cut(s) 264
PflFI GACNNNGTC 1 cut(s) 635
PflMI CCANNNNNTGG 1 cut(s) 935
PleI GAGTC 2 cut(s) 118, 989
PpsI GAGTC 2 cut(s) 118, 989
PsiI TTATAA 1 cut(s) 701
PspEI GGTNACC 1 cut(s) 109
PspFI CCCAGC 2 cut(s) 198, 271
PspN4I GGNNCC 3 cut(s) 36, 355, 508
PspXI VCTCGAGB 1 cut(s) 64
PstI CTGCAG 2 cut(s) 52, 568
PstNI CAGNNNCTG 1 cut(s) 617
PsuI RGATCY 1 cut(s) 825
PsyI GACNNNGTC 1 cut(s) 635
RsaI GTAC 1 cut(s) 135
RsaNI GTAC 1 cut(s) 134
RseI CAYNNNNRTG 1 cut(s) 837
SaqAI TTAA 2 cut(s) 11, 78
Sau3AI GATC 2 cut(s) 416, 825
SbfI CCTGCAGG 1 cut(s) 568
ScaI AGTACT 1 cut(s) 135
SchI GAGTC 2 cut(s) 118, 989
SdaI CCTGCAGG 1 cut(s) 568
SduI GDGCHC 2 cut(s) 509, 992
SetI ASST 8 cut(s) 89, 277, 340, 492, 532, 619, 963, 1016
SfaNI GCATC 3 cut(s) 169, 428, 484
SfcI CTRYAG 2 cut(s) 48, 564
Sfr274I CTCGAG 1 cut(s) 64
SlaI CTCGAG 1 cut(s) 64
SmiMI CAYNNNNRTG 1 cut(s) 837
SmlI CTYRAG 1 cut(s) 64
SmoI CTYRAG 1 cut(s) 64
Sse8387I CCTGCAGG 1 cut(s) 568
Sse9I AATT 6 cut(s) 4, 166, 216, 594, 651, 751
SsiI CCGC 1 cut(s) 554
SspMI CTAG 1 cut(s) 491
StyI CCWWGG 1 cut(s) 767
TaaI ACNGT 2 cut(s) 378, 635
TaqI TCGA 4 cut(s) 65, 170, 433, 980
TasI AATT 6 cut(s) 4, 166, 216, 594, 651, 751
TatI WGTACW 1 cut(s) 133
TfiI GAWTC 1 cut(s) 264
Tru1I TTAA 2 cut(s) 11, 78
Tru9I TTAA 2 cut(s) 11, 78
TscAI CASTG 2 cut(s) 383, 827
TseFI GTSAC 1 cut(s) 109
Tsp45I GTSAC 1 cut(s) 109
TspDTI ATGAA 4 cut(s) 17, 252, 620, 971
TspGWI ACGGA 1 cut(s) 873
TspRI CASTG 2 cut(s) 383, 827
Tth111I GACNNNGTC 1 cut(s) 635
Van91I CCANNNNNTGG 1 cut(s) 935
XapI RAATTY 2 cut(s) 4, 166
XhoI CTCGAG 1 cut(s) 64
XmiI GTMKAC 1 cut(s) 916
XspI CTAG 1 cut(s) 491
ZrmI AGTACT 1 cut(s) 135
Zsp2I ATGCAT 1 cut(s) 1010
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.