Rh7BG135900

isoform X1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0007001
Physical Location & Seq
Reverse (-)
10112783 .. 10118901
6119 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG135900.1

Sequence Viewer

Length: 1005 bp
ATGGGAACAAAAAGTTCTTGGGAGCCAATCATGACTGCAGATACAACAGCCTCGAGTTACTGGTTTAACTGGAGGTTTTTGCTTTGTTTTATATGGGTCACGATCTCCCTGACTCTTTCAGTACTTCTCATATTGAGATATGAAGGGCATCAAAATTCGAGGCGTAATAATAACAGCAGAGAAACCCAGGAAGAAGAAGAAACAATTGGAACTTTGTATGAGGATGAAACTTGGAGACCATGCCTCAAAGGAATCCACCCAGCTTGGCTTCTGGCTTTTAGACTTGTTGCTTTCTTCGTGCTTTTGGTTCTGCTCATCATCACAGCTTGTGTTGATGGAGGTACCATCTTTTATTTCTATACACAGTGGACATTCATATTGATTACTATTTATTTTGGGCTTGGATCATTGCTCTCCATTCGAGGATGCTATCGATACCATAAGAAAACTGCTGGTGAAAGGGTTGATAATGTAGAGGTAGATGCAGAACAGGGCACCATAGAGAAATACATAGACCCTCATGTTGAACAACAACATCAACCGCGCCATCCTGCAGGCATTTTGGGTTATGTCTTCCAAATAATTTTCCAGATGAACGCAGGAGCTGTCATCCTCACGGACTGTGTCTTTTGGTTTGTAATTGTTCCATTTCTTACAATCAAAGATTACAACTTGAACTTTCTGATTATAAATATGCACACAATCAATGCTGTTTTCTTGCTCGGTGAAACTGTTTTGAATTGCTTGCCATTTCCTTGGTTCAGAATAGGATATTTCTTCATGTGGACTATCACTTATGTAGTTTTCCAGTGGATCTGTCATGCTTGTGTCAAACTTTGGTGGCCATATCCATTTCTGGACTTGTCGTCTCCGTATGCTCCATTATGGTATTTGTCGGTTGGTCTACTGCACTTCCCATGCTATGGCATTTTTGCTCTGATAATGAAGCTGAAACACCATCTGTTTTCGACAAAGTGCCCCGACTCTTATCAATGCATGAGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

334

Amino Acids

39.19

Weight (kDa)

6.58

Isoelectric Point (pI)

34.23

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 689
Acc65I GGTACC 1 cut(s) 341
AccB1I GGYRCC 2 cut(s) 341, 494
AccB7I CCANNNNNTGG 1 cut(s) 923
AccI GTMKAC 1 cut(s) 904
AccII CGCG 1 cut(s) 544
AciI CCGC 1 cut(s) 542
AclWI GGATC 2 cut(s) 412, 821
AcoI YGGCCR 1 cut(s) 842
AcsI RAATTY 1 cut(s) 154
AfaI GTAC 2 cut(s) 123, 343
AfiI CCNNNNNNNGG 1 cut(s) 923
AgsI TTSAA 3 cut(s) 527, 676, 739
AhdI GACNNNNNGTC 1 cut(s) 865
AjnI CCWGG 1 cut(s) 186
AjuI GAANNNNNNNTTGG 2 cut(s) 189, 221
AluBI AGCT 4 cut(s) 263, 326, 605, 949
AluI AGCT 4 cut(s) 263, 326, 605, 949
Alw26I GTCTC 2 cut(s) 229, 873
AlwI GGATC 2 cut(s) 412, 821
AlwNI CAGNNNCTG 1 cut(s) 605
Ama87I CYCGRG 1 cut(s) 52
AoxI GGCC 1 cut(s) 842
ApoI RAATTY 1 cut(s) 154
Asp718I GGTACC 1 cut(s) 341
AspLEI GCGC 1 cut(s) 546
AsuHPI GGTGA 2 cut(s) 467, 737
AvaI CYCGRG 1 cut(s) 52
BaeGI GKGCMC 2 cut(s) 497, 980
BalI TGGCCA 1 cut(s) 844
BanI GGYRCC 2 cut(s) 341, 494
BbsI GAAGAC 1 cut(s) 565
BccI CCATC 4 cut(s) 329, 353, 555, 966
BciT130I CCWGG 1 cut(s) 188
BcoDI GTCTC 2 cut(s) 229, 873
BfmI CTRYAG 2 cut(s) 36, 552
BmcAI AGTACT 1 cut(s) 123
Bme1390I CCNGG 1 cut(s) 188
BmeRI GACNNNNNGTC 1 cut(s) 865
BmeT110I CYCGRG 1 cut(s) 52
BmiI GGNNCC 3 cut(s) 24, 343, 496
BmrFI CCNGG 1 cut(s) 188
BmsI GCATC 3 cut(s) 157, 416, 472
BpiI GAAGAC 1 cut(s) 565
BpmI CTGGAG 1 cut(s) 91
Bsa29I ATCGAT 1 cut(s) 433
BsaI GGTCTC 1 cut(s) 229
BsaJI CCNNGG 2 cut(s) 186, 755
Bsc4I CCNNNNNNNGG 1 cut(s) 923
Bse1I ACTGG 3 cut(s) 65, 74, 808
Bse3DI GCAATG 1 cut(s) 407
BseBI CCWGG 1 cut(s) 188
BseCI ATCGAT 1 cut(s) 433
BseDI CCNNGG 2 cut(s) 186, 755
BseGI GGATG 4 cut(s) 229, 431, 547, 609
BseLI CCNNNNNNNGG 1 cut(s) 923
BseMI GCAATG 1 cut(s) 407
BseNI ACTGG 3 cut(s) 65, 74, 808
BseSI GKGCMC 2 cut(s) 497, 980
BseYI CCCAGC 1 cut(s) 259
BsgI GTGCAG 1 cut(s) 893
Bsh1236I CGCG 1 cut(s) 544
BshFI GGCC 1 cut(s) 844
BshNI GGYRCC 2 cut(s) 341, 494
BshVI ATCGAT 1 cut(s) 433
BsiHKCI CYCGRG 1 cut(s) 52
BslI CCNNNNNNNGG 1 cut(s) 923
BsmAI GTCTC 2 cut(s) 229, 873
BsmBI CGTCTC 1 cut(s) 873
BsnI GGCC 1 cut(s) 844
Bso31I GGTCTC 1 cut(s) 229
BsoBI CYCGRG 1 cut(s) 52
Bsp1286I GDGCHC 2 cut(s) 497, 980
Bsp143I GATC 3 cut(s) 102, 404, 813
BspACI CCGC 1 cut(s) 542
BspANI GGCC 1 cut(s) 844
BspDI ATCGAT 1 cut(s) 433
BspFNI CGCG 1 cut(s) 544
BspHI TCATGA 1 cut(s) 30
BspLI GGNNCC 3 cut(s) 24, 343, 496
BspMAI CTGCAG 2 cut(s) 40, 556
BspPI GGATC 2 cut(s) 412, 821
BspT107I GGYRCC 2 cut(s) 341, 494
BspTNI GGTCTC 1 cut(s) 229
BsrDI GCAATG 1 cut(s) 407
BsrI ACTGG 3 cut(s) 65, 74, 808
BssECI CCNNGG 2 cut(s) 186, 755
BssMI GATC 3 cut(s) 102, 404, 813
BssT1I CCWWGG 1 cut(s) 755
Bst2UI CCWGG 1 cut(s) 188
Bst4CI ACNGT 3 cut(s) 366, 623, 733
BstC8I GCNNGC 2 cut(s) 556, 746
BstF5I GGATG 4 cut(s) 229, 431, 547, 609
BstFNI CGCG 1 cut(s) 544
BstHHI GCGC 1 cut(s) 546
BstKTI GATC 3 cut(s) 105, 407, 816
BstMAI GTCTC 2 cut(s) 229, 873
BstMBI GATC 3 cut(s) 102, 404, 813
BstNI CCWGG 1 cut(s) 188
BstSCI CCNGG 1 cut(s) 186
BstSFI CTRYAG 2 cut(s) 36, 552
BstSLI GKGCMC 2 cut(s) 497, 980
BstUI CGCG 1 cut(s) 544
BstV2I GAAGAC 1 cut(s) 565
BstX2I RGATCY 1 cut(s) 813
BstXI CCANNNNNNTGG 1 cut(s) 756
BstYI RGATCY 1 cut(s) 813
Bsu15I ATCGAT 1 cut(s) 433
BsuRI GGCC 1 cut(s) 844
BsuTUI ATCGAT 1 cut(s) 433
BtsCI GGATG 4 cut(s) 229, 431, 547, 609
BtsIMutI CAGTG 2 cut(s) 371, 815
Cac8I GCNNGC 2 cut(s) 556, 746
CaiI CAGNNNCTG 1 cut(s) 605
CciI TCATGA 1 cut(s) 30
CfoI GCGC 1 cut(s) 546
ClaI ATCGAT 1 cut(s) 433
Csp6I GTAC 2 cut(s) 122, 342
CspCI CAANNNNNGTGG 2 cut(s) 245, 280
CviAII CATG 7 cut(s) 31, 240, 521, 781, 821, 918, 997
CviQI GTAC 2 cut(s) 122, 342
DpnI GATC 3 cut(s) 104, 406, 815
DpnII GATC 3 cut(s) 102, 404, 813
DriI GACNNNNNGTC 1 cut(s) 865
EaeI YGGCCR 1 cut(s) 842
Eam1105I GACNNNNNGTC 1 cut(s) 865
Eco130I CCWWGG 1 cut(s) 755
Eco31I GGTCTC 1 cut(s) 229
Eco88I CYCGRG 1 cut(s) 52
EcoRII CCWGG 1 cut(s) 186
EcoT14I CCWWGG 1 cut(s) 755
EcoT22I ATGCAT 1 cut(s) 998
ErhI CCWWGG 1 cut(s) 755
Esp3I CGTCTC 1 cut(s) 873
FaeI CATG 7 cut(s) 34, 243, 524, 784, 824, 921, 1000
FatI CATG 7 cut(s) 30, 239, 520, 780, 820, 917, 996
FblI GTMKAC 1 cut(s) 904
FokI GGATG 4 cut(s) 236, 438, 534, 596
GlaI GCGC 1 cut(s) 545
GsaI CCCAGC 1 cut(s) 263
GsuI CTGGAG 1 cut(s) 91
HaeIII GGCC 1 cut(s) 844
HhaI GCGC 1 cut(s) 546
Hin1II CATG 7 cut(s) 34, 243, 524, 784, 824, 921, 1000
Hin6I GCGC 1 cut(s) 544
HinP1I GCGC 1 cut(s) 544
HinfI GANTC 3 cut(s) 112, 252, 983
HphI GGTGA 2 cut(s) 467, 737
Hpy166II GTNNAC 3 cut(s) 369, 786, 905
Hpy188I TCNGA 3 cut(s) 684, 764, 939
Hpy188III TCNNGA 4 cut(s) 31, 100, 589, 857
Hpy8I GTNNAC 3 cut(s) 369, 786, 905
HpyAV CCTTC 1 cut(s) 137
HpyCH4III ACNGT 3 cut(s) 366, 623, 733
HpyCH4V TGCA 6 cut(s) 38, 485, 554, 697, 910, 996
Hsp92II CATG 7 cut(s) 34, 243, 524, 784, 824, 921, 1000
HspAI GCGC 1 cut(s) 544
KpnI GGTACC 1 cut(s) 345
Kzo9I GATC 3 cut(s) 102, 404, 813
LmnI GCTCC 3 cut(s) 22, 602, 883
LweI GCATC 3 cut(s) 157, 416, 472
MaeIII GTNAC 2 cut(s) 56, 97
MalI GATC 3 cut(s) 104, 406, 815
MboI GATC 3 cut(s) 102, 404, 813
MboII GAAGA 6 cut(s) 203, 206, 209, 286, 565, 769
MfeI CAATTG 1 cut(s) 204
MflI RGATCY 1 cut(s) 813
MhlI GDGCHC 2 cut(s) 497, 980
MlsI TGGCCA 1 cut(s) 844
MluCI AATT 5 cut(s) 154, 204, 582, 639, 739
MluNI TGGCCA 1 cut(s) 844
MlyI GAGTC 2 cut(s) 106, 977
Mox20I TGGCCA 1 cut(s) 844
Mph1103I ATGCAT 1 cut(s) 998
MscI TGGCCA 1 cut(s) 844
MseI TTAA 1 cut(s) 66
MslI CAYNNNNRTG 1 cut(s) 825
Msp20I TGGCCA 1 cut(s) 844
MspR9I CCNGG 1 cut(s) 188
MunI CAATTG 1 cut(s) 204
MvaI CCWGG 1 cut(s) 188
MvnI CGCG 1 cut(s) 544
NdeII GATC 3 cut(s) 102, 404, 813
NlaIII CATG 7 cut(s) 34, 243, 524, 784, 824, 921, 1000
NlaIV GGNNCC 3 cut(s) 24, 343, 496
NmuCI GTSAC 1 cut(s) 97
NsiI ATGCAT 1 cut(s) 998
PaeR7I CTCGAG 1 cut(s) 52
PagI TCATGA 1 cut(s) 30
PfeI GAWTC 1 cut(s) 252
PflFI GACNNNGTC 1 cut(s) 623
PflMI CCANNNNNTGG 1 cut(s) 923
PleI GAGTC 2 cut(s) 106, 977
PpsI GAGTC 2 cut(s) 106, 977
PsiI TTATAA 1 cut(s) 689
Psp6I CCWGG 1 cut(s) 186
PspFI CCCAGC 1 cut(s) 259
PspGI CCWGG 1 cut(s) 186
PspN4I GGNNCC 3 cut(s) 24, 343, 496
PspXI VCTCGAGB 1 cut(s) 52
PstI CTGCAG 2 cut(s) 40, 556
PstNI CAGNNNCTG 1 cut(s) 605
PsuI RGATCY 1 cut(s) 813
PsyI GACNNNGTC 1 cut(s) 623
RsaI GTAC 2 cut(s) 123, 343
RsaNI GTAC 2 cut(s) 122, 342
RseI CAYNNNNRTG 1 cut(s) 825
SaqAI TTAA 1 cut(s) 66
Sau3AI GATC 3 cut(s) 102, 404, 813
SbfI CCTGCAGG 1 cut(s) 556
ScaI AGTACT 1 cut(s) 123
SchI GAGTC 2 cut(s) 106, 977
ScrFI CCNGG 1 cut(s) 188
SdaI CCTGCAGG 1 cut(s) 556
SduI GDGCHC 2 cut(s) 497, 980
SetI ASST 8 cut(s) 77, 265, 328, 343, 480, 607, 951, 1004
SfaNI GCATC 3 cut(s) 157, 416, 472
SfcI CTRYAG 2 cut(s) 36, 552
Sfr274I CTCGAG 1 cut(s) 52
SlaI CTCGAG 1 cut(s) 52
SmiMI CAYNNNNRTG 1 cut(s) 825
SmlI CTYRAG 1 cut(s) 52
SmoI CTYRAG 1 cut(s) 52
Sse8387I CCTGCAGG 1 cut(s) 556
Sse9I AATT 5 cut(s) 154, 204, 582, 639, 739
SsiI CCGC 1 cut(s) 542
StyD4I CCNGG 1 cut(s) 186
StyI CCWWGG 1 cut(s) 755
TaaI ACNGT 3 cut(s) 366, 623, 733
TaqI TCGA 5 cut(s) 53, 158, 421, 433, 968
TasI AATT 5 cut(s) 154, 204, 582, 639, 739
TatI WGTACW 1 cut(s) 121
TfiI GAWTC 1 cut(s) 252
Tru1I TTAA 1 cut(s) 66
Tru9I TTAA 1 cut(s) 66
TscAI CASTG 2 cut(s) 371, 815
TseFI GTSAC 1 cut(s) 97
Tsp45I GTSAC 1 cut(s) 97
TspDTI ATGAA 6 cut(s) 156, 240, 364, 608, 769, 959
TspGWI ACGGA 2 cut(s) 632, 861
TspRI CASTG 2 cut(s) 371, 815
Tth111I GACNNNGTC 1 cut(s) 623
Van91I CCANNNNNTGG 1 cut(s) 923
XapI RAATTY 1 cut(s) 154
XhoI CTCGAG 1 cut(s) 52
XmiI GTMKAC 1 cut(s) 904
ZrmI AGTACT 1 cut(s) 123
Zsp2I ATGCAT 1 cut(s) 998
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.