Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000092.1

Orthogroup ID

OG0007001

Physical Location & Seq

Genomic Coordinates Forward (+)

20679 .. 22527

Gene Structure 1849 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000092.1_g000005.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 975 bp

atgactgcagatacaacagcctcgagttactggtttaactggaggtttttgctttgttttacatgggtcacgatctccctgactctttcagtacttctcatattgagatttgaagggcatcaaaattcgaggcgtagtaataacagcagagaaacccagcaagaagaagaaacaattggaactttgtatgaggatgaaacttggagaccatgcctcaaaggaatccacccagcttggcttctggcttttagacttgttgctttctttgtgcttttggttctgctcatcatcacagcttgtgttgatggaggcaccatcttttatttttatacacagtggacattcacattgattactatttattttgggcttggatcattgctctctattcgaggatgctaccaataccataagaaaactgctggtgaaagggttgataatgtagagttagatgcagaacagggcaccgaagagaaatacatagaacctcatgttgaacaacaacatcaaccgcgccatcctgcaggcattttgggttatgtcttccaaataattttccagatgaacgcaggagctgtcatcctcacagactgtgtcttttggtttgtaattgttccatttcttacaatcaaagattacaacttgaactttctgattataaatatgcacacaatcaatgctgttttcttgctcggtgaaactgctttgaattgcttgccatttccttggttcagaataggatatttcttcgtgtggactaccacttatgtagttttccagtggatctgtcatgcttgtgtcaaactttggtggccatatccatttctggacttgtcgtctccgtatgctccattatggtatttgtctgttggtctactgcacttcccatgctatggcatttttgctctgataatgaagctgaaacaccatctgttttcgacaaagtgccccgactcttatcaatgcatgaggtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

324

Amino Acids

37.95

Weight (kDa)

6.4

Isoelectric Point (pI)

37.2

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007001)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G62960 AT5G62960
fragaria_vesca	FvH4_5g05450 FvH4_5g05450
malus_domestica	MD06G1172600.v1.1 MD14G1178500.v1.1
prunus_persica	Prupe.5G171900_v2.0.a1 Prupe.5G171900_v2.0.a1 Prupe.5G171900_v2.0.a1 Prupe.5G171900_v2.0.a1 Prupe.5G171900_v2.0.a1 Prupe.5G171900_v2.0.a1 Prupe.5G171900_v2.0.a1 Prupe.5G171900_v2.0.a1
pyrus_communis	pycom06g15370 pycom14g14880
rosa_chinensis	RchiOBHm_Chr7g0193381
rosa_laevigata	RLG00000004274
rosa_multiflora	Rmu_ssc0000092.1_g000005
rosa_roxburghii	Rroxscaffold_3G00262160
rosa_rugosa	Rorug07G0009200
rosa_samantha	Rh7AG135600 Rh7BG135900 Rh7CG139300
rosa_wichuraiana	Rw7G011560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	659
AccB1I	GGYRCC	2 cut(s)	311, 464
AccB7I	CCANNNNNTGG	1 cut(s)	893
AccI	GTMKAC	1 cut(s)	874
AccII	CGCG	1 cut(s)	514
AciI	CCGC	1 cut(s)	512
AclWI	GGATC	2 cut(s)	382, 791
AcoI	YGGCCR	1 cut(s)	812
AcsI	RAATTY	1 cut(s)	124
AfaI	GTAC	1 cut(s)	93
AfiI	CCNNNNNNNGG	1 cut(s)	893
AgsI	TTSAA	4 cut(s)	113, 497, 646, 709
AhdI	GACNNNNNGTC	1 cut(s)	835
AjuI	GAANNNNNNNTTGG	2 cut(s)	159, 191
AluBI	AGCT	4 cut(s)	233, 296, 575, 919
AluI	AGCT	4 cut(s)	233, 296, 575, 919
Alw26I	GTCTC	2 cut(s)	199, 843
AlwI	GGATC	2 cut(s)	382, 791
AlwNI	CAGNNNCTG	1 cut(s)	575
Ama87I	CYCGRG	1 cut(s)	22
AoxI	GGCC	1 cut(s)	812
ApoI	RAATTY	1 cut(s)	124
AspLEI	GCGC	1 cut(s)	516
AsuHPI	GGTGA	2 cut(s)	437, 707
AvaI	CYCGRG	1 cut(s)	22
BaeGI	GKGCMC	2 cut(s)	467, 950
BalI	TGGCCA	1 cut(s)	814
BanI	GGYRCC	2 cut(s)	311, 464
BbsI	GAAGAC	1 cut(s)	535
BccI	CCATC	4 cut(s)	299, 323, 525, 936
BcoDI	GTCTC	2 cut(s)	199, 843
BfmI	CTRYAG	2 cut(s)	6, 522
BmcAI	AGTACT	1 cut(s)	93
BmeRI	GACNNNNNGTC	1 cut(s)	835
BmeT110I	CYCGRG	1 cut(s)	22
BmiI	GGNNCC	2 cut(s)	313, 466
BmsI	GCATC	3 cut(s)	127, 386, 442
BpiI	GAAGAC	1 cut(s)	535
BpmI	CTGGAG	1 cut(s)	61
BsaI	GGTCTC	1 cut(s)	199
BsaJI	CCNNGG	1 cut(s)	725
Bsc4I	CCNNNNNNNGG	1 cut(s)	893
Bse1I	ACTGG	3 cut(s)	35, 44, 778
Bse3DI	GCAATG	1 cut(s)	377
BseDI	CCNNGG	1 cut(s)	725
BseGI	GGATG	4 cut(s)	199, 401, 517, 579
BseLI	CCNNNNNNNGG	1 cut(s)	893
BseMI	GCAATG	1 cut(s)	377
BseNI	ACTGG	3 cut(s)	35, 44, 778
BseSI	GKGCMC	2 cut(s)	467, 950
BseYI	CCCAGC	2 cut(s)	156, 229
BsgI	GTGCAG	1 cut(s)	863
Bsh1236I	CGCG	1 cut(s)	514
BshFI	GGCC	1 cut(s)	814
BshNI	GGYRCC	2 cut(s)	311, 464
BsiHKCI	CYCGRG	1 cut(s)	22
BslI	CCNNNNNNNGG	1 cut(s)	893
BsmAI	GTCTC	2 cut(s)	199, 843
BsmBI	CGTCTC	1 cut(s)	843
BsnI	GGCC	1 cut(s)	814
Bso31I	GGTCTC	1 cut(s)	199
BsoBI	CYCGRG	1 cut(s)	22
Bsp1286I	GDGCHC	2 cut(s)	467, 950
Bsp143I	GATC	3 cut(s)	72, 374, 783
BspACI	CCGC	1 cut(s)	512
BspANI	GGCC	1 cut(s)	814
BspFNI	CGCG	1 cut(s)	514
BspLI	GGNNCC	2 cut(s)	313, 466
BspMAI	CTGCAG	2 cut(s)	10, 526
BspPI	GGATC	2 cut(s)	382, 791
BspT107I	GGYRCC	2 cut(s)	311, 464
BspTNI	GGTCTC	1 cut(s)	199
BsrDI	GCAATG	1 cut(s)	377
BsrI	ACTGG	3 cut(s)	35, 44, 778
BssECI	CCNNGG	1 cut(s)	725
BssMI	GATC	3 cut(s)	72, 374, 783
BssT1I	CCWWGG	1 cut(s)	725
Bst4CI	ACNGT	2 cut(s)	336, 593
Bst6I	CTCTTC	1 cut(s)	465
BstC8I	GCNNGC	2 cut(s)	526, 716
BstF5I	GGATG	4 cut(s)	199, 401, 517, 579
BstFNI	CGCG	1 cut(s)	514
BstHHI	GCGC	1 cut(s)	516
BstKTI	GATC	3 cut(s)	75, 377, 786
BstMAI	GTCTC	2 cut(s)	199, 843
BstMBI	GATC	3 cut(s)	72, 374, 783
BstSFI	CTRYAG	2 cut(s)	6, 522
BstSLI	GKGCMC	2 cut(s)	467, 950
BstUI	CGCG	1 cut(s)	514
BstV2I	GAAGAC	1 cut(s)	535
BstX2I	RGATCY	1 cut(s)	783
BstXI	CCANNNNNNTGG	1 cut(s)	726
BstYI	RGATCY	1 cut(s)	783
BsuRI	GGCC	1 cut(s)	814
BtsCI	GGATG	4 cut(s)	199, 401, 517, 579
BtsIMutI	CAGTG	2 cut(s)	341, 785
Cac8I	GCNNGC	2 cut(s)	526, 716
CaiI	CAGNNNCTG	1 cut(s)	575
CfoI	GCGC	1 cut(s)	516
Csp6I	GTAC	1 cut(s)	92
CspCI	CAANNNNNGTGG	2 cut(s)	215, 250
CviAII	CATG	6 cut(s)	63, 210, 491, 791, 888, 967
CviJI	RGCY	9 cut(s)	20, 233, 238, 245, 296, 370, 575, 814, 919
CviKI_1	RGCY	9 cut(s)	20, 233, 238, 245, 296, 370, 575, 814, 919
CviQI	GTAC	1 cut(s)	92
DpnI	GATC	3 cut(s)	74, 376, 785
DpnII	GATC	3 cut(s)	72, 374, 783
DriI	GACNNNNNGTC	1 cut(s)	835
EaeI	YGGCCR	1 cut(s)	812
Eam1104I	CTCTTC	1 cut(s)	465
Eam1105I	GACNNNNNGTC	1 cut(s)	835
EarI	CTCTTC	1 cut(s)	465
Eco130I	CCWWGG	1 cut(s)	725
Eco31I	GGTCTC	1 cut(s)	199
Eco88I	CYCGRG	1 cut(s)	22
EcoT14I	CCWWGG	1 cut(s)	725
EcoT22I	ATGCAT	1 cut(s)	968
ErhI	CCWWGG	1 cut(s)	725
Esp3I	CGTCTC	1 cut(s)	843
FaeI	CATG	6 cut(s)	66, 213, 494, 794, 891, 970
FatI	CATG	6 cut(s)	62, 209, 490, 790, 887, 966
FblI	GTMKAC	1 cut(s)	874
FokI	GGATG	4 cut(s)	206, 408, 504, 566
GlaI	GCGC	1 cut(s)	515
GsaI	CCCAGC	2 cut(s)	160, 233
GsuI	CTGGAG	1 cut(s)	61
HaeIII	GGCC	1 cut(s)	814
HhaI	GCGC	1 cut(s)	516
Hin1II	CATG	6 cut(s)	66, 213, 494, 794, 891, 970
Hin6I	GCGC	1 cut(s)	514
HinP1I	GCGC	1 cut(s)	514
HinfI	GANTC	3 cut(s)	82, 222, 953
HphI	GGTGA	2 cut(s)	437, 707
Hpy166II	GTNNAC	3 cut(s)	339, 756, 875
Hpy188I	TCNGA	3 cut(s)	654, 734, 909
Hpy188III	TCNNGA	3 cut(s)	70, 559, 827
Hpy8I	GTNNAC	3 cut(s)	339, 756, 875
HpyAV	CCTTC	1 cut(s)	107
HpyCH4III	ACNGT	2 cut(s)	336, 593
HpyCH4V	TGCA	6 cut(s)	8, 455, 524, 667, 880, 966
Hsp92II	CATG	6 cut(s)	66, 213, 494, 794, 891, 970
HspAI	GCGC	1 cut(s)	514
Kzo9I	GATC	3 cut(s)	72, 374, 783
LmnI	GCTCC	2 cut(s)	572, 853
LweI	GCATC	3 cut(s)	127, 386, 442
MaeIII	GTNAC	2 cut(s)	26, 67
MalI	GATC	3 cut(s)	74, 376, 785
MboI	GATC	3 cut(s)	72, 374, 783
MboII	GAAGA	5 cut(s)	176, 179, 482, 535, 739
MfeI	CAATTG	1 cut(s)	174
MflI	RGATCY	1 cut(s)	783
MhlI	GDGCHC	2 cut(s)	467, 950
MlsI	TGGCCA	1 cut(s)	814
MluCI	AATT	5 cut(s)	124, 174, 552, 609, 709
MluNI	TGGCCA	1 cut(s)	814
MlyI	GAGTC	2 cut(s)	76, 947
Mox20I	TGGCCA	1 cut(s)	814
Mph1103I	ATGCAT	1 cut(s)	968
MscI	TGGCCA	1 cut(s)	814
MseI	TTAA	1 cut(s)	36
MslI	CAYNNNNRTG	1 cut(s)	795
Msp20I	TGGCCA	1 cut(s)	814
MunI	CAATTG	1 cut(s)	174
MvnI	CGCG	1 cut(s)	514
NdeII	GATC	3 cut(s)	72, 374, 783
NlaIII	CATG	6 cut(s)	66, 213, 494, 794, 891, 970
NlaIV	GGNNCC	2 cut(s)	313, 466
NmuCI	GTSAC	1 cut(s)	67
NsiI	ATGCAT	1 cut(s)	968
PaeR7I	CTCGAG	1 cut(s)	22
PfeI	GAWTC	1 cut(s)	222
PflFI	GACNNNGTC	1 cut(s)	593
PflMI	CCANNNNNTGG	1 cut(s)	893
PleI	GAGTC	2 cut(s)	76, 947
PpsI	GAGTC	2 cut(s)	76, 947
PsiI	TTATAA	1 cut(s)	659
PspFI	CCCAGC	2 cut(s)	156, 229
PspN4I	GGNNCC	2 cut(s)	313, 466
PspXI	VCTCGAGB	1 cut(s)	22
PstI	CTGCAG	2 cut(s)	10, 526
PstNI	CAGNNNCTG	1 cut(s)	575
PsuI	RGATCY	1 cut(s)	783
PsyI	GACNNNGTC	1 cut(s)	593
RsaI	GTAC	1 cut(s)	93
RsaNI	GTAC	1 cut(s)	92
RseI	CAYNNNNRTG	1 cut(s)	795
SaqAI	TTAA	1 cut(s)	36
Sau3AI	GATC	3 cut(s)	72, 374, 783
SbfI	CCTGCAGG	1 cut(s)	526
ScaI	AGTACT	1 cut(s)	93
SchI	GAGTC	2 cut(s)	76, 947
SdaI	CCTGCAGG	1 cut(s)	526
SduI	GDGCHC	2 cut(s)	467, 950
SetI	ASST	7 cut(s)	47, 235, 298, 490, 577, 921, 974
SfaNI	GCATC	3 cut(s)	127, 386, 442
SfcI	CTRYAG	2 cut(s)	6, 522
Sfr274I	CTCGAG	1 cut(s)	22
SlaI	CTCGAG	1 cut(s)	22
SmiMI	CAYNNNNRTG	1 cut(s)	795
SmlI	CTYRAG	1 cut(s)	22
SmoI	CTYRAG	1 cut(s)	22
Sse8387I	CCTGCAGG	1 cut(s)	526
Sse9I	AATT	5 cut(s)	124, 174, 552, 609, 709
SsiI	CCGC	1 cut(s)	512
StyI	CCWWGG	1 cut(s)	725
TaaI	ACNGT	2 cut(s)	336, 593
TaqI	TCGA	4 cut(s)	23, 128, 391, 938
TasI	AATT	5 cut(s)	124, 174, 552, 609, 709
TatI	WGTACW	1 cut(s)	91
TfiI	GAWTC	1 cut(s)	222
Tru1I	TTAA	1 cut(s)	36
Tru9I	TTAA	1 cut(s)	36
TscAI	CASTG	2 cut(s)	341, 785
TseFI	GTSAC	1 cut(s)	67
Tsp45I	GTSAC	1 cut(s)	67
TspDTI	ATGAA	3 cut(s)	210, 578, 929
TspGWI	ACGGA	1 cut(s)	831
TspRI	CASTG	2 cut(s)	341, 785
Tth111I	GACNNNGTC	1 cut(s)	593
Van91I	CCANNNNNTGG	1 cut(s)	893
XapI	RAATTY	1 cut(s)	124
XhoI	CTCGAG	1 cut(s)	22
XmiI	GTMKAC	1 cut(s)	874
ZrmI	AGTACT	1 cut(s)	93
Zsp2I	ATGCAT	1 cut(s)	968

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.