Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0005079

Physical Location & Seq

Genomic Coordinates Forward (+)

257717 .. 260249

Gene Structure 2533 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1004300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 966 bp

ATGGAGTCGTCAGCCGACGGCAAGCCGAAGAAGGCGGGGGGCCGCCAGTGCTGCATCTGTCATGAGAGACGGGCCGCCCTCAAGAGACCCAAAACCCTAGAGCAGATTTGCAGGGAATGTTTCTACGAGGTGTTTGAGGAGGAGATTCATCAGGTCATCGTCGAAAACCAGTTATTTAAGCCTGGTGAGCGCATTGCCCTCGGTGCCTCCGGCGGCAAACGTAAATTAATTAATCAAGCCGTGCTTCCAGTGCTAGTGAATTCCACTGTCCTCGCTTATGTATTATCCGAATTGAATAGGCGGCACAATTACGGTTTGGATCTCTTCCTCTTGTCAGTCGATGAGGGCATTACTGGCTACAGGGACGATTCTCTTGAAACCGTCAAAAGAAATGAAATCCAGTATGGATTGCCGCTGAAAATAGTCTCCTACAAGGATTTGTATGGGTGGACCATGGATGAAATAGTAAAGATGATAGGTCTCAAGAACAATTGCACCTTCTGTGGTGTTTTTTGTCGTCAGGCCCTTGATCGTGGTGCTGCACTGTTGAAGGTAGACAAGCTAGCTACTGGACATAATGCAGATGATATTGCTGAAACAGTTCTTTTGAACTTATTAAGAGGCATTTATTCACCCAATGCATATCGTGGTTTTGCTCGTGAATTCATCAAGGATTTAGAAAGAATCAGACCTAGGGCTATACTTGACCTCATCAAATCAGGGGAAAATTTCAGAATTTCAACTTGTACAAAAATGCCAGAACAGGGGACATGTGAACGGTGCGGTTACATTTCCAGCCAGAAATGGTGCAAGGCTTGTGTTTTGCTAGAGGGGCTGAATAAGGGTTTGCCAAAGCTGGGAATTGGCCGGAGTCGAGGACTTAATAACGATGGGAAGAATGATACGAAGGAAAGAAATGGAACAAAAAGTATTGAAAGCAAGCAATGTGGAAGTTTGGATTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04122 map04122

Pfam Domains

Protein Families

ATP_bind_3 zn-ribbon_14

Protein Analysis

322

Amino Acids

36.01

Weight (kDa)

8.91

Isoelectric Point (pI)

35.07

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zn-ribbon_14	PF16503	256 - 286	1.2e-18	Zinc-ribbon

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005079)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G76170 AT1G76170 AT1G76170 AT1G76170 AT1G76170 AT1G76170 AT1G76170 AT2G44270
fragaria_vesca	FvH4_2g37771 FvH4_2g37771 FvH4_2g37771
malus_domestica	MD08G1004800.v1.1 MD15G1004300.v1.1
prunus_persica	Prupe.1G356900_v2.0.a1
pyrus_communis	pycom08g00360 pycom08g00370 pycom15g00310 pycom15g00320
rosa_chinensis	RchiOBHm_Chr6g0303951 RchiOBHm_Chr6g0303961
rosa_laevigata	RLG00000011030
rosa_multiflora	Rmu_sc0004644.1_g000013 Rmu_sc0004644.1_g000014
rosa_roxburghii	Rroxscaffold_7G00164230
rosa_rugosa	Rorug06G0326200
rosa_samantha	Rh6AG440500 Rh6BG462400 Rh6CG452800 Rh6DG439800
rosa_wichuraiana	Rw6G038150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	203
AccI	GTMKAC	1 cut(s)	555
AciI	CCGC	7 cut(s)	35, 43, 75, 213, 301, 413, 783
AclWI	GGATC	1 cut(s)	327
AcoI	YGGCCR	1 cut(s)	865
AcsI	RAATTY	4 cut(s)	259, 662, 727, 735
AfaI	GTAC	1 cut(s)	748
AfiI	CCNNNNNNNGG	2 cut(s)	764, 857
AflIII	ACRYGT	1 cut(s)	770
AgsI	TTSAA	6 cut(s)	295, 377, 550, 610, 741, 935
AjnI	CCWGG	1 cut(s)	181
AluBI	AGCT	3 cut(s)	562, 566, 856
AluI	AGCT	3 cut(s)	562, 566, 856
Alw26I	GTCTC	4 cut(s)	61, 79, 430, 485
AlwI	GGATC	1 cut(s)	327
AoxI	GGCC	4 cut(s)	40, 72, 522, 865
ApeKI	GCWGC	2 cut(s)	51, 539
ApoI	RAATTY	4 cut(s)	259, 662, 727, 735
AseI	ATTAAT	2 cut(s)	227, 231
Asp700I	GAANNNNTTC	1 cut(s)	600
AspA2I	CCTAGG	1 cut(s)	692
AspLEI	GCGC	1 cut(s)	192
AspS9I	GGNCC	4 cut(s)	40, 72, 450, 523
AsuHPI	GGTGA	2 cut(s)	197, 624
AsuNHI	GCTAGC	1 cut(s)	562
AvaII	GGWCC	1 cut(s)	450
AvrII	CCTAGG	1 cut(s)	692
BanI	GGYRCC	1 cut(s)	203
BauI	CACGAG	1 cut(s)	657
BbvI	GCAGC	2 cut(s)	38, 526
BccI	CCATC	1 cut(s)	884
BceAI	ACGGC	2 cut(s)	34, 224
BcgI	CGANNNNNNTGC	2 cut(s)	181, 215
BciT130I	CCWGG	1 cut(s)	183
BcoDI	GTCTC	4 cut(s)	61, 79, 430, 485
BfaI	CTAG	5 cut(s)	98, 254, 563, 693, 827
BfmI	CTRYAG	1 cut(s)	358
BisI	GCNGC	7 cut(s)	43, 52, 75, 214, 302, 413, 540
BlnI	CCTAGG	1 cut(s)	692
BlsI	GCNGC	7 cut(s)	44, 53, 76, 215, 303, 414, 541
Bme1390I	CCNGG	1 cut(s)	183
Bme18I	GGWCC	1 cut(s)	450
BmgT120I	GGNCC	4 cut(s)	40, 72, 450, 523
BmiI	GGNNCC	2 cut(s)	41, 205
BmrFI	CCNGG	1 cut(s)	183
BmsI	GCATC	1 cut(s)	63
BmtI	GCTAGC	1 cut(s)	566
BpuEI	CTTGAG	2 cut(s)	65, 467
BsaI	GGTCTC	2 cut(s)	79, 485
BsaJI	CCNNGG	3 cut(s)	199, 453, 692
Bsc4I	CCNNNNNNNGG	2 cut(s)	764, 857
Bse1I	ACTGG	6 cut(s)	46, 169, 248, 358, 400, 574
Bse3DI	GCAATG	2 cut(s)	192, 950
BseBI	CCWGG	1 cut(s)	183
BseDI	CCNNGG	3 cut(s)	199, 453, 692
BseGI	GGATG	1 cut(s)	463
BseLI	CCNNNNNNNGG	2 cut(s)	764, 857
BseMI	GCAATG	2 cut(s)	192, 950
BseNI	ACTGG	6 cut(s)	46, 169, 248, 358, 400, 574
BseRI	GAGGAG	2 cut(s)	152, 155
BseXI	GCAGC	2 cut(s)	38, 526
BseYI	CCCAGC	1 cut(s)	856
BsgI	GTGCAG	1 cut(s)	525
BshFI	GGCC	4 cut(s)	42, 74, 524, 867
BshNI	GGYRCC	1 cut(s)	203
BsiSI	CCGG	2 cut(s)	210, 868
BslFI	GGGAC	2 cut(s)	377, 781
BslI	CCNNNNNNNGG	2 cut(s)	764, 857
BsmAI	GTCTC	4 cut(s)	61, 79, 430, 485
BsmBI	CGTCTC	1 cut(s)	61
BsmFI	GGGAC	2 cut(s)	377, 781
BsnI	GGCC	4 cut(s)	42, 74, 524, 867
Bso31I	GGTCTC	2 cut(s)	79, 485
Bsp1407I	TGTACA	1 cut(s)	746
Bsp143I	GATC	2 cut(s)	319, 529
Bsp19I	CCATGG	1 cut(s)	453
BspACI	CCGC	7 cut(s)	35, 43, 75, 213, 301, 413, 783
BspANI	GGCC	4 cut(s)	42, 74, 524, 867
BspHI	TCATGA	1 cut(s)	61
BspLI	GGNNCC	2 cut(s)	41, 205
BspOI	GCTAGC	1 cut(s)	566
BspPI	GGATC	1 cut(s)	327
BspT107I	GGYRCC	1 cut(s)	203
BspTNI	GGTCTC	2 cut(s)	79, 485
BsrDI	GCAATG	2 cut(s)	192, 950
BsrGI	TGTACA	1 cut(s)	746
BsrI	ACTGG	6 cut(s)	46, 169, 248, 358, 400, 574
BssECI	CCNNGG	3 cut(s)	199, 453, 692
BssMI	GATC	2 cut(s)	319, 529
BssSI	CACGAG	1 cut(s)	657
BssT1I	CCWWGG	2 cut(s)	453, 692
Bst2BI	CACGAG	1 cut(s)	657
Bst2UI	CCWGG	1 cut(s)	183
Bst4CI	ACNGT	6 cut(s)	268, 314, 382, 546, 601, 780
Bst6I	CTCTTC	1 cut(s)	329
BstAUI	TGTACA	1 cut(s)	746
BstC8I	GCNNGC	3 cut(s)	23, 564, 941
BstDSI	CCRYGG	1 cut(s)	453
BstF5I	GGATG	1 cut(s)	463
BstHHI	GCGC	1 cut(s)	192
BstKTI	GATC	2 cut(s)	322, 532
BstMAI	GTCTC	4 cut(s)	61, 79, 430, 485
BstMBI	GATC	2 cut(s)	319, 529
BstMWI	GCNNNNNNNGC	7 cut(s)	48, 51, 187, 203, 250, 354, 832
BstNI	CCWGG	1 cut(s)	183
BstNSI	RCATGY	1 cut(s)	774
BstSCI	CCNGG	1 cut(s)	181
BstSFI	CTRYAG	1 cut(s)	358
BstV1I	GCAGC	2 cut(s)	38, 526
BstX2I	RGATCY	1 cut(s)	319
BstYI	RGATCY	1 cut(s)	319
BsuRI	GGCC	4 cut(s)	42, 74, 524, 867
BtgI	CCRYGG	1 cut(s)	453
BtsCI	GGATG	1 cut(s)	463
BtsIMutI	CAGTG	4 cut(s)	53, 255, 264, 542
Cac8I	GCNNGC	3 cut(s)	23, 564, 941
CciI	TCATGA	1 cut(s)	61
CfoI	GCGC	1 cut(s)	192
Cfr13I	GGNCC	4 cut(s)	40, 72, 450, 523
Csp6I	GTAC	1 cut(s)	747
CspCI	CAANNNNNGTGG	2 cut(s)	928, 963
CviAII	CATG	3 cut(s)	62, 454, 771
CviQI	GTAC	1 cut(s)	747
DpnI	GATC	2 cut(s)	321, 531
DpnII	GATC	2 cut(s)	319, 529
EaeI	YGGCCR	1 cut(s)	865
Eam1104I	CTCTTC	1 cut(s)	329
EarI	CTCTTC	1 cut(s)	329
Eco130I	CCWWGG	2 cut(s)	453, 692
Eco31I	GGTCTC	2 cut(s)	79, 485
Eco47I	GGWCC	1 cut(s)	450
EcoO109I	RGGNCCY	1 cut(s)	523
EcoRI	GAATTC	2 cut(s)	259, 662
EcoRII	CCWGG	1 cut(s)	181
EcoT14I	CCWWGG	2 cut(s)	453, 692
EcoT22I	ATGCAT	1 cut(s)	643
ErhI	CCWWGG	2 cut(s)	453, 692
Esp3I	CGTCTC	1 cut(s)	61
FaeI	CATG	3 cut(s)	65, 457, 774
FaiI	YATR	9 cut(s)	63, 279, 405, 444, 455, 576, 643, 701, 772
FalI	AAGNNNNNCTT	2 cut(s)	228, 260
FaqI	GGGAC	2 cut(s)	377, 781
FatI	CATG	3 cut(s)	61, 453, 770
FauI	CCCGC	1 cut(s)	28
FblI	GTMKAC	1 cut(s)	555
Fnu4HI	GCNGC	7 cut(s)	43, 52, 75, 214, 302, 413, 540
FokI	GGATG	1 cut(s)	470
Fsp4HI	GCNGC	7 cut(s)	43, 52, 75, 214, 302, 413, 540
FspBI	CTAG	5 cut(s)	98, 254, 563, 693, 827
GlaI	GCGC	1 cut(s)	191
GluI	GCNGC	7 cut(s)	43, 52, 75, 214, 302, 413, 540
GsaI	CCCAGC	1 cut(s)	860
HaeIII	GGCC	4 cut(s)	42, 74, 524, 867
HapII	CCGG	2 cut(s)	210, 868
HhaI	GCGC	1 cut(s)	192
Hin1II	CATG	3 cut(s)	65, 457, 774
Hin6I	GCGC	1 cut(s)	190
HinP1I	GCGC	1 cut(s)	190
HinfI	GANTC	5 cut(s)	5, 145, 368, 684, 871
HpaII	CCGG	2 cut(s)	210, 868
HphI	GGTGA	2 cut(s)	197, 624
Hpy166II	GTNNAC	3 cut(s)	450, 556, 776
Hpy188I	TCNGA	4 cut(s)	289, 689, 734, 965
Hpy188III	TCNNGA	5 cut(s)	62, 82, 374, 484, 659
Hpy8I	GTNNAC	3 cut(s)	450, 556, 776
Hpy99I	CGWCG	2 cut(s)	20, 164
HpyAV	CCTTC	4 cut(s)	25, 508, 544, 901
HpyCH4III	ACNGT	6 cut(s)	268, 314, 382, 546, 601, 780
HpyCH4IV	ACGT	1 cut(s)	220
HpyCH4V	TGCA	7 cut(s)	54, 111, 495, 542, 581, 641, 810
HpyF10VI	GCNNNNNNNGC	7 cut(s)	48, 51, 187, 203, 250, 354, 832
HpySE526I	ACGT	1 cut(s)	220
Hsp92II	CATG	3 cut(s)	65, 457, 774
HspAI	GCGC	1 cut(s)	190
Kzo9I	GATC	2 cut(s)	319, 529
Lsp1109I	GCAGC	2 cut(s)	38, 526
LweI	GCATC	1 cut(s)	63
MaeI	CTAG	5 cut(s)	98, 254, 563, 693, 827
MaeII	ACGT	1 cut(s)	220
MaeIII	GTNAC	1 cut(s)	785
MalI	GATC	2 cut(s)	321, 531
MboI	GATC	2 cut(s)	319, 529
MboII	GAAGA	3 cut(s)	40, 316, 907
MfeI	CAATTG	1 cut(s)	490
MflI	RGATCY	1 cut(s)	319
MlyI	GAGTC	2 cut(s)	14, 880
Mph1103I	ATGCAT	1 cut(s)	643
MroXI	GAANNNNTTC	1 cut(s)	600
MseI	TTAA	5 cut(s)	177, 227, 231, 617, 882
MspA1I	CMGCKG	1 cut(s)	415
MspI	CCGG	2 cut(s)	210, 868
MspR9I	CCNGG	1 cut(s)	183
MunI	CAATTG	1 cut(s)	490
MvaI	CCWGG	1 cut(s)	183
MwoI	GCNNNNNNNGC	7 cut(s)	48, 51, 187, 203, 250, 354, 832
NcoI	CCATGG	1 cut(s)	453
NdeII	GATC	2 cut(s)	319, 529
NheI	GCTAGC	1 cut(s)	562
NlaIII	CATG	3 cut(s)	65, 457, 774
NlaIV	GGNNCC	2 cut(s)	41, 205
NsiI	ATGCAT	1 cut(s)	643
NspI	RCATGY	1 cut(s)	774
PacI	TTAATTAA	1 cut(s)	231
PagI	TCATGA	1 cut(s)	61
PciI	ACATGT	1 cut(s)	770
PdmI	GAANNNNTTC	1 cut(s)	600
PfeI	GAWTC	3 cut(s)	145, 368, 684
PkrI	GCNGC	7 cut(s)	44, 53, 76, 215, 303, 414, 541
PleI	GAGTC	2 cut(s)	13, 879
PpsI	GAGTC	2 cut(s)	13, 879
PscI	ACATGT	1 cut(s)	770
PshBI	ATTAAT	2 cut(s)	227, 231
Psp6I	CCWGG	1 cut(s)	181
PspFI	CCCAGC	1 cut(s)	856
PspGI	CCWGG	1 cut(s)	181
PspN4I	GGNNCC	2 cut(s)	41, 205
PspPI	GGNCC	4 cut(s)	40, 72, 450, 523
PsuI	RGATCY	1 cut(s)	319
RsaI	GTAC	1 cut(s)	748
RsaNI	GTAC	1 cut(s)	747
SaqAI	TTAA	5 cut(s)	177, 227, 231, 617, 882
SatI	GCNGC	7 cut(s)	43, 52, 75, 214, 302, 413, 540
Sau3AI	GATC	2 cut(s)	319, 529
Sau96I	GGNCC	4 cut(s)	40, 72, 450, 523
SchI	GAGTC	2 cut(s)	14, 880
ScrFI	CCNGG	1 cut(s)	183
SfaNI	GCATC	1 cut(s)	63
SfcI	CTRYAG	1 cut(s)	358
SinI	GGWCC	1 cut(s)	450
SmlI	CTYRAG	2 cut(s)	80, 482
SmoI	CTYRAG	2 cut(s)	80, 482
SsiI	CCGC	7 cut(s)	35, 43, 75, 213, 301, 413, 783
SspMI	CTAG	5 cut(s)	98, 254, 563, 693, 827
StyD4I	CCNGG	1 cut(s)	181
StyI	CCWWGG	2 cut(s)	453, 692
TaaI	ACNGT	6 cut(s)	268, 314, 382, 546, 601, 780
TaiI	ACGT	1 cut(s)	223
TaqI	TCGA	3 cut(s)	162, 339, 874
TatI	WGTACW	1 cut(s)	746
TauI	GCSGC	5 cut(s)	45, 77, 216, 304, 415
TfiI	GAWTC	3 cut(s)	145, 368, 684
Tru1I	TTAA	5 cut(s)	177, 227, 231, 617, 882
Tru9I	TTAA	5 cut(s)	177, 227, 231, 617, 882
TscAI	CASTG	4 cut(s)	53, 255, 271, 549
TseI	GCWGC	2 cut(s)	51, 539
TspDTI	ATGAA	4 cut(s)	137, 408, 474, 655
TspRI	CASTG	4 cut(s)	53, 255, 271, 549
VpaK11BI	GGWCC	1 cut(s)	450
VspI	ATTAAT	2 cut(s)	227, 231
XapI	RAATTY	4 cut(s)	259, 662, 727, 735
XceI	RCATGY	1 cut(s)	774
XmaJI	CCTAGG	1 cut(s)	692
XmiI	GTMKAC	1 cut(s)	555
XmnI	GAANNNNTTC	1 cut(s)	600
XspI	CTAG	5 cut(s)	98, 254, 563, 693, 827
Zsp2I	ATGCAT	1 cut(s)	643

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.