Rw6G038150

Plays a central role in 2-thiolation of mcm(5)S(2)U at tRNA wobble positions of tRNA(Lys), tRNA(Glu) and tRNA(Gln). Directly binds tRNAs and probably acts by catalyzing adenylation of tRNAs, an intermediate required for 2-thiolation. It is unclear whether it acts as a sulfurtransferase that transfers sulfur from thiocarboxylated URM1 onto the uridine of tRNAs at wobble position

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr6
Physical Location & Seq
Reverse (-)
62358216 .. 62360615
2400 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw6G038150.1

Sequence Viewer

Length: 1059 bp
ATGGAAGGCTCGGCTGCCGGCAAGCCCAAGAAGTCCGGCGCTCGCCAGTGCTGCATCTGTAACCAGAAAAGAGCTGCTCTCAAGAGGCCCAAAACCCTAGAACAGATTTGCAGGGAGTGTTTCTATGAGGTATTTGAGGAGGAGATACATCAGGTGATTGTTGAAAACCAGTTGTTTAAGCCCGGTGAACGCATTGCCATTGGTGCCTCCGGTGGAAAAGATTCCACTGTTCTTGCCTATGTATTATCGGAATTGAATAAGCGGCACAATTATGGGTTGGATCTCTTCCTGTTGTCTGTGGATGAGGGCATTACAGGCTACAGGGATGATTCTCTTGAAACCGTCAAAAGAAATGAAATGCAGTATGGATTGCCGTTAAAGATTGTGTCGTACAAGGATTTGTATGGGTGGACGATGGATGAAATAGTAAAGATGATTGGTCTCAAGAATAATTGCACATTTTGTGGTGTTTTTCGTCGTCAGGCCCTTGATCGCGGTGCTGCTTTGTTGAAAGTAGACAAGCTTGCTACCGGACATAATGCCGATGATATAGCTGAAACAGTTCTATTGAACATATTACGTGGTGATATTGCAAGATTGAGTAGATGCACTTCAATTGTCACTGGTGAAGATGGACCAATTCCAAGATGCAAACCTTTTAAATACACCTATGAGAAGGAAATTATCTTAGAAGCTGCTGTTGTTAAAATTGCAGGCATTTATTCACCAAATGCTTATCGTGGTTTTGCTCGTGAGTTCATCAAAGATTTGGAAAGAATCAGACCTAGGGCCATACTTGACATAATCAAATCAGGGGAGAATTTCAGAATTTCTACTACTACAAAAATGCCGGAACAGGGGACATGTGAACGCTGTGGTTACATTTCAAGCCAGAAATGGTGTAAAGCTTGTGTATTGCTTGAGGGACTGAATAGGGGTTTGCCAAAGATGGGAATTGGTCGGAATCGAGGAATTAACAACACTCAGAAGAAGGATATGAAACAAAGTAATGGAACAAAAAGTATAGAGAGCAAACAATGTGGGACTTTGGACTTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

352

Amino Acids

39.46

Weight (kDa)

9.06

Isoelectric Point (pI)

31.62

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ATP_bind_3 PF01171 65 - 224 2.8e-12 PP-loop domain
zn-ribbon_14 PF16503 287 - 317 1.7e-18 Zinc-ribbon
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 203
AccI GTMKAC 1 cut(s) 516
AccII CGCG 1 cut(s) 495
AciI CCGC 2 cut(s) 262, 495
AclWI GGATC 1 cut(s) 288
AcsI RAATTY 2 cut(s) 820, 828
AfaI GTAC 1 cut(s) 392
AfiI CCNNNNNNNGG 2 cut(s) 857, 950
AflIII ACRYGT 1 cut(s) 863
AgsI TTSAA 7 cut(s) 164, 256, 338, 511, 571, 615, 888
AluBI AGCT 5 cut(s) 74, 523, 554, 695, 908
AluI AGCT 5 cut(s) 74, 523, 554, 695, 908
Alw26I GTCTC 1 cut(s) 446
AlwI GGATC 1 cut(s) 288
AoxI GGCC 3 cut(s) 86, 483, 789
ApeKI GCWGC 5 cut(s) 14, 51, 74, 500, 695
ApoI RAATTY 2 cut(s) 820, 828
Asp700I GAANNNNTTC 2 cut(s) 220, 561
AspA2I CCTAGG 1 cut(s) 785
AspLEI GCGC 1 cut(s) 41
AspS9I GGNCC 4 cut(s) 87, 484, 635, 789
AsuC2I CCSGG 1 cut(s) 183
AsuHPI GGTGA 5 cut(s) 166, 197, 596, 638, 717
AvaII GGWCC 1 cut(s) 635
AvrII CCTAGG 1 cut(s) 785
BanI GGYRCC 1 cut(s) 203
BarI GAAGNNNNNNTAC 2 cut(s) 595, 627
BauI CACGAG 1 cut(s) 750
BbvI GCAGC 4 cut(s) 38, 61, 487, 682
BccI CCATC 3 cut(s) 409, 626, 943
BceAI ACGGC 1 cut(s) 358
BcnI CCSGG 1 cut(s) 183
BcoDI GTCTC 1 cut(s) 446
BfaI CTAG 2 cut(s) 98, 786
BfmI CTRYAG 1 cut(s) 319
BfoI RGCGCY 1 cut(s) 42
BisI GCNGC 6 cut(s) 15, 52, 75, 263, 501, 696
BlnI CCTAGG 1 cut(s) 785
BlsI GCNGC 6 cut(s) 16, 53, 76, 264, 502, 697
Bme1390I CCNGG 1 cut(s) 183
Bme18I GGWCC 1 cut(s) 635
BmgT120I GGNCC 4 cut(s) 87, 484, 635, 789
BmiI GGNNCC 1 cut(s) 205
BmrFI CCNGG 1 cut(s) 183
BmsI GCATC 3 cut(s) 63, 596, 638
BplI GAGNNNNNCTC 2 cut(s) 63, 95
BpuEI CTTGAG 3 cut(s) 65, 428, 941
BpuMI CCSGG 1 cut(s) 183
BsaAI YACGTR 1 cut(s) 581
BsaI GGTCTC 1 cut(s) 446
BsaJI CCNNGG 1 cut(s) 785
BsaWI WCCGGW 2 cut(s) 209, 530
Bsc4I CCNNNNNNNGG 2 cut(s) 857, 950
Bse118I RCCGGY 1 cut(s) 17
Bse1I ACTGG 3 cut(s) 46, 169, 628
Bse3DI GCAATG 1 cut(s) 192
BseDI CCNNGG 1 cut(s) 785
BseGI GGATG 3 cut(s) 307, 331, 424
BseLI CCNNNNNNNGG 2 cut(s) 857, 950
BseMI GCAATG 1 cut(s) 192
BseMII CTCAG 1 cut(s) 998
BseNI ACTGG 3 cut(s) 46, 169, 628
BseRI GAGGAG 2 cut(s) 152, 155
BseXI GCAGC 4 cut(s) 38, 61, 487, 682
Bsh1236I CGCG 1 cut(s) 495
BshFI GGCC 3 cut(s) 88, 485, 791
BshNI GGYRCC 1 cut(s) 203
BsiSI CCGG 6 cut(s) 18, 36, 183, 210, 531, 851
BslFI GGGAC 2 cut(s) 874, 939
BslI CCNNNNNNNGG 2 cut(s) 857, 950
BsmAI GTCTC 1 cut(s) 446
BsmFI GGGAC 2 cut(s) 874, 939
BsnI GGCC 3 cut(s) 88, 485, 791
Bso31I GGTCTC 1 cut(s) 446
Bsp143I GATC 2 cut(s) 280, 490
BspACI CCGC 2 cut(s) 262, 495
BspANI GGCC 3 cut(s) 88, 485, 791
BspCNI CTCAG 1 cut(s) 997
BspFNI CGCG 1 cut(s) 495
BspLI GGNNCC 1 cut(s) 205
BspPI GGATC 1 cut(s) 288
BspT107I GGYRCC 1 cut(s) 203
BspTNI GGTCTC 1 cut(s) 446
BsrDI GCAATG 1 cut(s) 192
BsrFI RCCGGY 1 cut(s) 17
BsrI ACTGG 3 cut(s) 46, 169, 628
BssAI RCCGGY 1 cut(s) 17
BssECI CCNNGG 1 cut(s) 785
BssMI GATC 2 cut(s) 280, 490
BssSI CACGAG 1 cut(s) 750
BssT1I CCWWGG 1 cut(s) 785
Bst2BI CACGAG 1 cut(s) 750
Bst4CI ACNGT 3 cut(s) 229, 343, 562
Bst6I CTCTTC 1 cut(s) 290
BstBAI YACGTR 1 cut(s) 581
BstC8I GCNNGC 5 cut(s) 19, 23, 43, 525, 715
BstDEI CTNAG 2 cut(s) 688, 984
BstF5I GGATG 3 cut(s) 307, 331, 424
BstFNI CGCG 1 cut(s) 495
BstH2I RGCGCY 1 cut(s) 42
BstHHI GCGC 1 cut(s) 41
BstKTI GATC 2 cut(s) 283, 493
BstMAI GTCTC 1 cut(s) 446
BstMBI GATC 2 cut(s) 280, 490
BstMWI GCNNNNNNNGC 3 cut(s) 51, 203, 315
BstNSI RCATGY 1 cut(s) 867
BstSCI CCNGG 1 cut(s) 181
BstSFI CTRYAG 1 cut(s) 319
BstUI CGCG 1 cut(s) 495
BstV1I GCAGC 4 cut(s) 38, 61, 487, 682
BstX2I RGATCY 1 cut(s) 280
BstYI RGATCY 1 cut(s) 280
BsuRI GGCC 3 cut(s) 88, 485, 791
BtsCI GGATG 3 cut(s) 307, 331, 424
BtsIMutI CAGTG 3 cut(s) 53, 225, 621
Cac8I GCNNGC 5 cut(s) 19, 23, 43, 525, 715
CfoI GCGC 1 cut(s) 41
Cfr10I RCCGGY 1 cut(s) 17
Cfr13I GGNCC 4 cut(s) 87, 484, 635, 789
Csp6I GTAC 1 cut(s) 391
CspCI CAANNNNNGTGG 4 cut(s) 214, 249, 1021, 1056
CviAII CATG 1 cut(s) 864
CviQI GTAC 1 cut(s) 391
DdeI CTNAG 2 cut(s) 688, 984
DpnI GATC 2 cut(s) 282, 492
DpnII GATC 2 cut(s) 280, 490
DraI TTTAAA 1 cut(s) 661
Eam1104I CTCTTC 1 cut(s) 290
EarI CTCTTC 1 cut(s) 290
Eco130I CCWWGG 1 cut(s) 785
Eco31I GGTCTC 1 cut(s) 446
Eco47I GGWCC 1 cut(s) 635
EcoO109I RGGNCCY 1 cut(s) 484
EcoT14I CCWWGG 1 cut(s) 785
ErhI CCWWGG 1 cut(s) 785
FaeI CATG 1 cut(s) 867
FaqI GGGAC 2 cut(s) 874, 939
FatI CATG 1 cut(s) 863
FblI GTMKAC 1 cut(s) 516
Fnu4HI GCNGC 6 cut(s) 15, 52, 75, 263, 501, 696
FokI GGATG 3 cut(s) 314, 338, 431
Fsp4HI GCNGC 6 cut(s) 15, 52, 75, 263, 501, 696
FspBI CTAG 2 cut(s) 98, 786
GlaI GCGC 1 cut(s) 40
GluI GCNGC 6 cut(s) 15, 52, 75, 263, 501, 696
HaeII RGCGCY 1 cut(s) 42
HaeIII GGCC 3 cut(s) 88, 485, 791
HapII CCGG 6 cut(s) 18, 36, 183, 210, 531, 851
HhaI GCGC 1 cut(s) 41
Hin1II CATG 1 cut(s) 867
Hin6I GCGC 1 cut(s) 39
HinP1I GCGC 1 cut(s) 39
HindIII AAGCTT 2 cut(s) 521, 906
HinfI GANTC 4 cut(s) 221, 329, 777, 964
HpaII CCGG 6 cut(s) 18, 36, 183, 210, 531, 851
HphI GGTGA 5 cut(s) 166, 197, 596, 638, 717
Hpy166II GTNNAC 4 cut(s) 188, 411, 517, 869
Hpy188I TCNGA 6 cut(s) 250, 782, 827, 963, 987, 1058
Hpy188III TCNNGA 4 cut(s) 82, 335, 445, 752
Hpy8I GTNNAC 4 cut(s) 188, 411, 517, 869
Hpy99I CGWCG 1 cut(s) 480
HpyAV CCTTC 2 cut(s) 670, 985
HpyCH4III ACNGT 3 cut(s) 229, 343, 562
HpyCH4IV ACGT 1 cut(s) 580
HpyCH4V TGCA 8 cut(s) 54, 111, 361, 456, 593, 609, 651, 713
HpyF10VI GCNNNNNNNGC 3 cut(s) 51, 203, 315
HpyF3I CTNAG 2 cut(s) 688, 984
HpySE526I ACGT 1 cut(s) 580
Hsp92II CATG 1 cut(s) 867
HspAI GCGC 1 cut(s) 39
KroI GCCGGC 1 cut(s) 17
KroNI GCCGGC 1 cut(s) 19
Kzo9I GATC 2 cut(s) 280, 490
Lsp1109I GCAGC 4 cut(s) 38, 61, 487, 682
LweI GCATC 3 cut(s) 63, 596, 638
MaeI CTAG 2 cut(s) 98, 786
MaeII ACGT 1 cut(s) 580
MaeIII GTNAC 3 cut(s) 59, 619, 878
MalI GATC 2 cut(s) 282, 492
MboI GATC 2 cut(s) 280, 490
MboII GAAGA 3 cut(s) 277, 641, 1000
MfeI CAATTG 1 cut(s) 615
MflI RGATCY 1 cut(s) 280
MmeI TCCRAC 2 cut(s) 258, 941
MnlI CCTC 8 cut(s) 78, 121, 130, 133, 217, 298, 916, 962
MroNI GCCGGC 1 cut(s) 17
MroXI GAANNNNTTC 2 cut(s) 220, 561
MseI TTAA 5 cut(s) 177, 377, 660, 705, 975
MslI CAYNNNNRTG 1 cut(s) 270
MspI CCGG 6 cut(s) 18, 36, 183, 210, 531, 851
MspR9I CCNGG 1 cut(s) 183
MunI CAATTG 1 cut(s) 615
MvnI CGCG 1 cut(s) 495
MwoI GCNNNNNNNGC 3 cut(s) 51, 203, 315
NaeI GCCGGC 1 cut(s) 19
NciI CCSGG 1 cut(s) 183
NdeII GATC 2 cut(s) 280, 490
NgoMIV GCCGGC 1 cut(s) 17
NlaIII CATG 1 cut(s) 867
NlaIV GGNNCC 1 cut(s) 205
NmuCI GTSAC 1 cut(s) 619
NspI RCATGY 1 cut(s) 867
PciI ACATGT 1 cut(s) 863
PdiI GCCGGC 1 cut(s) 19
PdmI GAANNNNTTC 2 cut(s) 220, 561
PfeI GAWTC 4 cut(s) 221, 329, 777, 964
PkrI GCNGC 6 cut(s) 16, 53, 76, 264, 502, 697
Ppu21I YACGTR 1 cut(s) 581
PscI ACATGT 1 cut(s) 863
PspN4I GGNNCC 1 cut(s) 205
PspPI GGNCC 4 cut(s) 87, 484, 635, 789
PsuI RGATCY 1 cut(s) 280
RsaI GTAC 1 cut(s) 392
RsaNI GTAC 1 cut(s) 391
RseI CAYNNNNRTG 1 cut(s) 270
SaqAI TTAA 5 cut(s) 177, 377, 660, 705, 975
SatI GCNGC 6 cut(s) 15, 52, 75, 263, 501, 696
Sau3AI GATC 2 cut(s) 280, 490
Sau96I GGNCC 4 cut(s) 87, 484, 635, 789
ScrFI CCNGG 1 cut(s) 183
SfaNI GCATC 3 cut(s) 63, 596, 638
SfcI CTRYAG 1 cut(s) 319
SinI GGWCC 1 cut(s) 635
SmiMI CAYNNNNRTG 1 cut(s) 270
SmlI CTYRAG 3 cut(s) 80, 443, 920
SmoI CTYRAG 3 cut(s) 80, 443, 920
SsiI CCGC 2 cut(s) 262, 495
SspMI CTAG 2 cut(s) 98, 786
StyD4I CCNGG 1 cut(s) 181
StyI CCWWGG 1 cut(s) 785
TaaI ACNGT 3 cut(s) 229, 343, 562
TaiI ACGT 1 cut(s) 583
TaqI TCGA 1 cut(s) 967
TauI GCSGC 1 cut(s) 265
TfiI GAWTC 4 cut(s) 221, 329, 777, 964
Tru1I TTAA 5 cut(s) 177, 377, 660, 705, 975
Tru9I TTAA 5 cut(s) 177, 377, 660, 705, 975
TscAI CASTG 3 cut(s) 53, 232, 628
TseFI GTSAC 1 cut(s) 619
TseI GCWGC 5 cut(s) 14, 51, 74, 500, 695
Tsp45I GTSAC 1 cut(s) 619
TspDTI ATGAA 4 cut(s) 369, 435, 748, 1013
TspRI CASTG 3 cut(s) 53, 232, 628
VpaK11BI GGWCC 1 cut(s) 635
XapI RAATTY 2 cut(s) 820, 828
XceI RCATGY 1 cut(s) 867
XmaJI CCTAGG 1 cut(s) 785
XmiI GTMKAC 1 cut(s) 516
XmnI GAANNNNTTC 2 cut(s) 220, 561
XspI CTAG 2 cut(s) 98, 786
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.