Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0010598

Physical Location & Seq

Genomic Coordinates Reverse (-)

12658215 .. 12667659

Gene Structure 9445 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1167300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 447 bp

ATGGCTTCGTCTTCGTCTTCGTCTCCGTCATCAACGGCTGCGAATCGGGACGGTTCTGCTTCAGCTGCCGAGGACGAAGCCGTCATGTCCGTGACCCGAGCTTTTGCGCAGGATGCGTTGCTGCAATTCCAGTCGGGATTTTACTTCCCAAAGACAACATGGCAACCCCTACTGAAGAGACAATTGCTGCTCCTATTCAAGACAAAATGGCCTCCCCCATGGAAGAGTCGATGGGCGCCCGCGTTGAAGAGTCGTAGTCCGCCCGCGTTGAAGAGCCGTGGTCTGCCCCCGTTGAAGAGCCAATATCCGCCCCAGCCGAAGAGCCGATATCCGCGCCCGTTGAAGAGCCGATGGCCGCCCCCGCTGAAGAGCCGATGGCTGTGCACGCTGAAGAGCCGATGGCTGCCCCCATTGAAGAGCCGATGGCTGCCCCCGTTGAAGAGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03018 map03018

Pfam Domains

Protein Families

TPR_8

Protein Analysis

149

Amino Acids

16.78

Weight (kDa)

11.44

Isoelectric Point (pI)

97.11

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010598)

Species	Orthologous Gene IDs
malus_domestica	MD02G1023900.v1.1 MD15G1167300.v1.1
rosa_chinensis	RchiOBHm_Chr5g0023731
rosa_laevigata	RLG00000001463 RLG00000029246 RLG00000035752 RLG00000035756
rosa_roxburghii	Rroxscaffold_2G00095550 Rroxscaffold_4G00314150 Rroxscaffold_7G00182450
rosa_rugosa	Rorug04G0119400 Rorug05G0415100
rosa_samantha	Rh1AG155200 Rh1BG031200 Rh2AG030900 Rh2BG395900 Rh2CG467200 Rh5CG182000 Rh5CG371300 Rh7CG297800 Rh7CG397200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	80
Acc16I	TGCGCA	1 cut(s)	108
AccB1I	GGYRCC	1 cut(s)	235
AccII	CGCG	3 cut(s)	242, 266, 334
AciI	CCGC	7 cut(s)	240, 260, 264, 308, 332, 356, 362
AcoI	YGGCCR	1 cut(s)	353
AcuI	CTGAAG	4 cut(s)	45, 194, 386, 410
AcyI	GRCGYC	1 cut(s)	236
AgsI	TTSAA	7 cut(s)	199, 247, 271, 295, 343, 415, 439
AluBI	AGCT	3 cut(s)	65, 101, 444
AluI	AGCT	3 cut(s)	65, 101, 444
Alw21I	GWGCWC	1 cut(s)	386
Alw26I	GTCTC	2 cut(s)	27, 172
Alw44I	GTGCAC	1 cut(s)	382
Ama87I	CYCGRG	1 cut(s)	96
AoxI	GGCC	2 cut(s)	209, 353
ApaLI	GTGCAC	1 cut(s)	382
ApeKI	GCWGC	6 cut(s)	38, 65, 121, 187, 403, 427
AspLEI	GCGC	3 cut(s)	109, 238, 336
AvaI	CYCGRG	1 cut(s)	96
BaeGI	GKGCMC	1 cut(s)	386
BanI	GGYRCC	1 cut(s)	235
BbsI	GAAGAC	2 cut(s)	3, 9
Bbv12I	GWGCWC	1 cut(s)	386
BbvI	GCAGC	6 cut(s)	25, 52, 108, 174, 390, 414
BccI	CCATC	5 cut(s)	225, 345, 369, 393, 417
BceAI	ACGGC	3 cut(s)	51, 65, 261
BcgI	CGANNNNNNTGC	2 cut(s)	363, 397
BcoDI	GTCTC	2 cut(s)	27, 172
BfoI	RGCGCY	1 cut(s)	239
BisI	GCNGC	7 cut(s)	39, 66, 122, 188, 356, 404, 428
BlsI	GCNGC	7 cut(s)	40, 67, 123, 189, 357, 405, 429
BmeT110I	CYCGRG	1 cut(s)	96
BmiI	GGNNCC	1 cut(s)	237
BmsI	GCATC	1 cut(s)	103
BpiI	GAAGAC	2 cut(s)	3, 9
BsaHI	GRCGYC	1 cut(s)	236
BsaJI	CCNNGG	3 cut(s)	69, 218, 277
Bse1I	ACTGG	1 cut(s)	130
BseDI	CCNNGG	3 cut(s)	69, 218, 277
BseGI	GGATG	1 cut(s)	118
BseNI	ACTGG	1 cut(s)	130
BseSI	GKGCMC	1 cut(s)	386
BseXI	GCAGC	6 cut(s)	25, 52, 108, 174, 390, 414
BseYI	CCCAGC	1 cut(s)	312
Bsh1236I	CGCG	3 cut(s)	242, 266, 334
BshFI	GGCC	2 cut(s)	211, 355
BshNI	GGYRCC	1 cut(s)	235
BsiHKAI	GWGCWC	1 cut(s)	386
BsiHKCI	CYCGRG	1 cut(s)	96
BslFI	GGGAC	1 cut(s)	62
BsmAI	GTCTC	2 cut(s)	27, 172
BsmBI	CGTCTC	1 cut(s)	27
BsmFI	GGGAC	1 cut(s)	62
BsnI	GGCC	2 cut(s)	211, 355
BsoBI	CYCGRG	1 cut(s)	96
Bsp1286I	GDGCHC	1 cut(s)	386
Bsp19I	CCATGG	1 cut(s)	218
BspACI	CCGC	7 cut(s)	240, 260, 264, 308, 332, 356, 362
BspANI	GGCC	2 cut(s)	211, 355
BspFNI	CGCG	3 cut(s)	242, 266, 334
BspLI	GGNNCC	1 cut(s)	237
BspQI	GCTCTTC	8 cut(s)	266, 290, 314, 338, 362, 386, 410, 434
BspT107I	GGYRCC	1 cut(s)	235
BsrI	ACTGG	1 cut(s)	130
BssECI	CCNNGG	3 cut(s)	69, 218, 277
BssNI	GRCGYC	1 cut(s)	236
BssT1I	CCWWGG	1 cut(s)	218
Bst4CI	ACNGT	1 cut(s)	53
BstACI	GRCGYC	1 cut(s)	236
BstC8I	GCNNGC	3 cut(s)	240, 264, 386
BstDSI	CCRYGG	2 cut(s)	218, 277
BstF5I	GGATG	1 cut(s)	118
BstFNI	CGCG	3 cut(s)	242, 266, 334
BstH2I	RGCGCY	1 cut(s)	239
BstHHI	GCGC	3 cut(s)	109, 238, 336
BstMAI	GTCTC	2 cut(s)	27, 172
BstMWI	GCNNNNNNNGC	4 cut(s)	65, 113, 361, 385
BstSLI	GKGCMC	1 cut(s)	386
BstUI	CGCG	3 cut(s)	242, 266, 334
BstV1I	GCAGC	6 cut(s)	25, 52, 108, 174, 390, 414
BstV2I	GAAGAC	2 cut(s)	3, 9
BsuRI	GGCC	2 cut(s)	211, 355
BtgI	CCRYGG	2 cut(s)	218, 277
BtsCI	GGATG	1 cut(s)	118
Cac8I	GCNNGC	3 cut(s)	240, 264, 386
CfoI	GCGC	3 cut(s)	109, 238, 336
CviAII	CATG	3 cut(s)	85, 159, 219
DinI	GGCGCC	1 cut(s)	237
DrdI	GACNNNNNNGTC	1 cut(s)	80
DseDI	GACNNNNNNGTC	1 cut(s)	80
EaeI	YGGCCR	1 cut(s)	353
EciI	GGCGGA	2 cut(s)	249, 297
Eco130I	CCWWGG	1 cut(s)	218
Eco32I	GATATC	1 cut(s)	329
Eco57I	CTGAAG	4 cut(s)	45, 194, 386, 410
Eco88I	CYCGRG	1 cut(s)	96
EcoRV	GATATC	1 cut(s)	329
EcoT14I	CCWWGG	1 cut(s)	218
EgeI	GGCGCC	1 cut(s)	237
EheI	GGCGCC	1 cut(s)	237
ErhI	CCWWGG	1 cut(s)	218
Esp3I	CGTCTC	1 cut(s)	27
FaeI	CATG	3 cut(s)	88, 162, 222
FaiI	YATR	3 cut(s)	86, 160, 220
FaqI	GGGAC	1 cut(s)	62
FatI	CATG	3 cut(s)	84, 158, 218
FauI	CCCGC	3 cut(s)	247, 271, 369
Fnu4HI	GCNGC	7 cut(s)	39, 66, 122, 188, 356, 404, 428
FokI	GGATG	1 cut(s)	125
Fsp4HI	GCNGC	7 cut(s)	39, 66, 122, 188, 356, 404, 428
FspI	TGCGCA	1 cut(s)	108
GlaI	GCGC	3 cut(s)	108, 237, 335
GluI	GCNGC	7 cut(s)	39, 66, 122, 188, 356, 404, 428
GsaI	CCCAGC	1 cut(s)	316
HaeII	RGCGCY	1 cut(s)	239
HaeIII	GGCC	2 cut(s)	211, 355
HhaI	GCGC	3 cut(s)	109, 238, 336
Hin1I	GRCGYC	1 cut(s)	236
Hin1II	CATG	3 cut(s)	88, 162, 222
Hin6I	GCGC	3 cut(s)	107, 236, 334
HinP1I	GCGC	3 cut(s)	107, 236, 334
HinfI	GANTC	3 cut(s)	43, 226, 250
Hpy166II	GTNNAC	1 cut(s)	384
Hpy188III	TCNNGA	3 cut(s)	47, 135, 199
Hpy8I	GTNNAC	1 cut(s)	384
HpyCH4III	ACNGT	1 cut(s)	53
HpyCH4V	TGCA	2 cut(s)	124, 384
HpyF10VI	GCNNNNNNNGC	4 cut(s)	65, 113, 361, 385
Hsp92I	GRCGYC	1 cut(s)	236
Hsp92II	CATG	3 cut(s)	88, 162, 222
HspAI	GCGC	3 cut(s)	107, 236, 334
KasI	GGCGCC	1 cut(s)	235
LguI	GCTCTTC	8 cut(s)	266, 290, 314, 338, 362, 386, 410, 434
LmnI	GCTCC	1 cut(s)	195
LpnPI	CCDG	3 cut(s)	95, 143, 326
Lsp1109I	GCAGC	6 cut(s)	25, 52, 108, 174, 390, 414
LweI	GCATC	1 cut(s)	103
MaeIII	GTNAC	1 cut(s)	91
MfeI	CAATTG	1 cut(s)	182
MhlI	GDGCHC	1 cut(s)	386
MluCI	AATT	2 cut(s)	125, 182
Mly113I	GGCGCC	1 cut(s)	236
MlyI	GAGTC	2 cut(s)	235, 259
MnlI	CCTC	2 cut(s)	64, 222
MslI	CAYNNNNRTG	1 cut(s)	89
MspA1I	CMGCKG	2 cut(s)	65, 364
MunI	CAATTG	1 cut(s)	182
MvnI	CGCG	3 cut(s)	242, 266, 334
MwoI	GCNNNNNNNGC	4 cut(s)	65, 113, 361, 385
NarI	GGCGCC	1 cut(s)	236
NcoI	CCATGG	1 cut(s)	218
NlaIII	CATG	3 cut(s)	88, 162, 222
NlaIV	GGNNCC	1 cut(s)	237
NmeAIII	GCCGAG	1 cut(s)	94
NmuCI	GTSAC	1 cut(s)	91
NsbI	TGCGCA	1 cut(s)	108
PciSI	GCTCTTC	8 cut(s)	266, 290, 314, 338, 362, 386, 410, 434
PfeI	GAWTC	1 cut(s)	43
PkrI	GCNGC	7 cut(s)	40, 67, 123, 189, 357, 405, 429
PleI	GAGTC	2 cut(s)	234, 258
PluTI	GGCGCC	1 cut(s)	239
PpsI	GAGTC	2 cut(s)	234, 258
PspFI	CCCAGC	1 cut(s)	312
PspN4I	GGNNCC	1 cut(s)	237
PvuII	CAGCTG	1 cut(s)	65
RseI	CAYNNNNRTG	1 cut(s)	89
SapI	GCTCTTC	8 cut(s)	266, 290, 314, 338, 362, 386, 410, 434
SatI	GCNGC	7 cut(s)	39, 66, 122, 188, 356, 404, 428
SchI	GAGTC	2 cut(s)	235, 259
SduI	GDGCHC	1 cut(s)	386
SetI	ASST	3 cut(s)	67, 103, 446
SfaNI	GCATC	1 cut(s)	103
SfoI	GGCGCC	1 cut(s)	237
SmiMI	CAYNNNNRTG	1 cut(s)	89
Sse9I	AATT	2 cut(s)	125, 182
SsiI	CCGC	7 cut(s)	240, 260, 264, 308, 332, 356, 362
SspDI	GGCGCC	1 cut(s)	235
StyI	CCWWGG	1 cut(s)	218
TaaI	ACNGT	1 cut(s)	53
TaqI	TCGA	1 cut(s)	229
TasI	AATT	2 cut(s)	125, 182
TauI	GCSGC	1 cut(s)	358
TfiI	GAWTC	1 cut(s)	43
TseFI	GTSAC	1 cut(s)	91
TseI	GCWGC	6 cut(s)	38, 65, 121, 187, 403, 427
Tsp45I	GTSAC	1 cut(s)	91
TspGWI	ACGGA	2 cut(s)	15, 79
VneI	GTGCAC	1 cut(s)	382
XcmI	CCANNNNNNNNNTGG	1 cut(s)	156

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.