Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0010598

Physical Location & Seq

Genomic Coordinates Reverse (-)

63056649 .. 63061517

Gene Structure 4869 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG467200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 453 bp

ATGGATTTGCTGGTTGGAGTCGGTGAGGCATCTTTGATAAGTCTTGCAGCTCCGTTCATTGATGACCATGCCCCTGCAGATCAGGCATCTAATCTGTTGTATGTTGACCAGCCTATTGGTACTAGATTCAATTATAGTTTTGATAGAAGTGATATTTATCACTCTGAAGATGGTGTTAGTAACAACCTCTCTGACTTCTTACAGGTGTGTCATTTAAAGGATGTAATTGATCAAATCATTAAGTTTTTTCGGAGTAATACAGCTAGTCAGAAGATAGCTATGGATACTGCAACTGCTACGCAGTGTAAAGGTTGGAGCAGCTCAAGTCAAGTAAGCTCAGAGATCATTCTGAAAAAGCAGTTGGAACTGGAGGACAATCTGTTGGATGCTCCACCAGACACACTAGGTGCTGCTGCCTTGGCACTACACTATGCAAGTGTGGGAGAATGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004180 GO:0004185 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005829 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008236 GO:0008238 GO:0009056 GO:0009057 GO:0009987 GO:0016787 GO:0017171 GO:0019538 GO:0030163 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0051603 GO:0070008 GO:0070011 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Peptidase_S10

Protein Analysis

150

Amino Acids

16.27

Weight (kDa)

4.38

Isoelectric Point (pI)

41.69

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010598)

Species	Orthologous Gene IDs
malus_domestica	MD02G1023900.v1.1 MD15G1167300.v1.1
rosa_chinensis	RchiOBHm_Chr5g0023731
rosa_laevigata	RLG00000001463 RLG00000029246 RLG00000035752 RLG00000035756
rosa_roxburghii	Rroxscaffold_2G00095550 Rroxscaffold_4G00314150 Rroxscaffold_7G00182450
rosa_rugosa	Rorug04G0119400 Rorug05G0415100
rosa_samantha	Rh1AG155200 Rh1BG031200 Rh2AG030900 Rh2BG395900 Rh2CG467200 Rh5CG182000 Rh5CG371300 Rh7CG297800 Rh7CG397200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcuI	CTGAAG	1 cut(s)	186
AdeI	CACNNNGTG	1 cut(s)	407
AfaI	GTAC	1 cut(s)	121
AgsI	TTSAA	1 cut(s)	130
AjuI	GAANNNNNNNTTGG	2 cut(s)	344, 376
AluBI	AGCT	5 cut(s)	50, 263, 278, 321, 336
AluI	AGCT	5 cut(s)	50, 263, 278, 321, 336
ApeKI	GCWGC	4 cut(s)	47, 318, 410, 413
AsuHPI	GGTGA	1 cut(s)	35
BbvI	GCAGC	4 cut(s)	59, 330, 397, 400
BccI	CCATC	1 cut(s)	164
BciVI	GTATCC	1 cut(s)	277
BclI	TGATCA	1 cut(s)	229
BfaI	CTAG	3 cut(s)	123, 264, 404
BfmI	CTRYAG	1 cut(s)	75
BfuI	GTATCC	1 cut(s)	277
BisI	GCNGC	4 cut(s)	48, 319, 411, 414
BlsI	GCNGC	4 cut(s)	49, 320, 412, 415
BmsI	GCATC	3 cut(s)	38, 95, 376
BpmI	CTGGAG	1 cut(s)	389
BpuEI	CTTGAG	1 cut(s)	307
BsaBI	GATNNNNATC	1 cut(s)	156
BsaJI	CCNNGG	1 cut(s)	417
Bse1I	ACTGG	1 cut(s)	372
Bse8I	GATNNNNATC	1 cut(s)	156
BseDI	CCNNGG	1 cut(s)	417
BseGI	GGATG	2 cut(s)	226, 391
BseJI	GATNNNNATC	1 cut(s)	156
BseMII	CTCAG	1 cut(s)	351
BseNI	ACTGG	1 cut(s)	372
BseXI	GCAGC	4 cut(s)	59, 330, 397, 400
Bsp143I	GATC	3 cut(s)	79, 229, 342
BspCNI	CTCAG	1 cut(s)	350
BspMAI	CTGCAG	1 cut(s)	79
BsrI	ACTGG	1 cut(s)	372
BssECI	CCNNGG	1 cut(s)	417
BssMI	GATC	3 cut(s)	79, 229, 342
BssT1I	CCWWGG	1 cut(s)	417
BstDEI	CTNAG	1 cut(s)	337
BstF5I	GGATG	2 cut(s)	226, 391
BstKTI	GATC	3 cut(s)	82, 232, 345
BstMBI	GATC	3 cut(s)	79, 229, 342
BstMWI	GCNNNNNNNGC	2 cut(s)	83, 419
BstSFI	CTRYAG	1 cut(s)	75
BstV1I	GCAGC	4 cut(s)	59, 330, 397, 400
BstXI	CCANNNNNNTGG	1 cut(s)	116
BsuI	GTATCC	1 cut(s)	277
BtsCI	GGATG	2 cut(s)	226, 391
BtsI	GCAGTG	1 cut(s)	308
BtsIMutI	CAGTG	1 cut(s)	308
Csp6I	GTAC	1 cut(s)	120
CviAII	CATG	1 cut(s)	68
CviJI	RGCY	6 cut(s)	50, 112, 263, 278, 321, 336
CviKI_1	RGCY	6 cut(s)	50, 112, 263, 278, 321, 336
CviQI	GTAC	1 cut(s)	120
DdeI	CTNAG	1 cut(s)	337
DpnI	GATC	3 cut(s)	81, 231, 344
DpnII	GATC	3 cut(s)	79, 229, 342
DraI	TTTAAA	1 cut(s)	216
DraIII	CACNNNGTG	1 cut(s)	407
Eco130I	CCWWGG	1 cut(s)	417
Eco57I	CTGAAG	1 cut(s)	186
EcoT14I	CCWWGG	1 cut(s)	417
ErhI	CCWWGG	1 cut(s)	417
FaeI	CATG	1 cut(s)	71
FaiI	YATR	5 cut(s)	69, 102, 135, 281, 432
FatI	CATG	1 cut(s)	67
FbaI	TGATCA	1 cut(s)	229
Fnu4HI	GCNGC	4 cut(s)	48, 319, 411, 414
FokI	GGATG	2 cut(s)	233, 398
Fsp4HI	GCNGC	4 cut(s)	48, 319, 411, 414
FspBI	CTAG	3 cut(s)	123, 264, 404
GluI	GCNGC	4 cut(s)	48, 319, 411, 414
GsuI	CTGGAG	1 cut(s)	389
Hin1II	CATG	1 cut(s)	71
HincII	GTYRAC	1 cut(s)	106
HindII	GTYRAC	1 cut(s)	106
HinfI	GANTC	2 cut(s)	18, 126
HphI	GGTGA	1 cut(s)	35
Hpy166II	GTNNAC	1 cut(s)	106
Hpy188I	TCNGA	6 cut(s)	166, 193, 252, 270, 340, 351
Hpy8I	GTNNAC	1 cut(s)	106
HpyCH4V	TGCA	4 cut(s)	47, 77, 290, 434
HpyF10VI	GCNNNNNNNGC	2 cut(s)	83, 419
HpyF3I	CTNAG	1 cut(s)	337
Hsp92II	CATG	1 cut(s)	71
Ksp22I	TGATCA	1 cut(s)	229
Kzo9I	GATC	3 cut(s)	79, 229, 342
LmnI	GCTCC	3 cut(s)	55, 315, 394
LpnPI	CCDG	6 cut(s)	68, 87, 122, 188, 353, 408
Lsp1109I	GCAGC	4 cut(s)	59, 330, 397, 400
LweI	GCATC	3 cut(s)	38, 95, 376
MaeI	CTAG	3 cut(s)	123, 264, 404
MaeIII	GTNAC	1 cut(s)	179
MalI	GATC	3 cut(s)	81, 231, 344
MboI	GATC	3 cut(s)	79, 229, 342
MboII	GAAGA	2 cut(s)	179, 283
MluCI	AATT	2 cut(s)	130, 225
MlyI	GAGTC	1 cut(s)	27
MmeI	TCCRAC	3 cut(s)	293, 342, 363
MnlI	CCTC	3 cut(s)	19, 197, 364
MseI	TTAA	2 cut(s)	215, 240
MwoI	GCNNNNNNNGC	2 cut(s)	83, 419
NdeII	GATC	3 cut(s)	79, 229, 342
NlaIII	CATG	1 cut(s)	71
PfeI	GAWTC	1 cut(s)	126
PkrI	GCNGC	4 cut(s)	49, 320, 412, 415
PleI	GAGTC	1 cut(s)	26
PpsI	GAGTC	1 cut(s)	26
PstI	CTGCAG	1 cut(s)	79
RsaI	GTAC	1 cut(s)	121
RsaNI	GTAC	1 cut(s)	120
SaqAI	TTAA	2 cut(s)	215, 240
SatI	GCNGC	4 cut(s)	48, 319, 411, 414
Sau3AI	GATC	3 cut(s)	79, 229, 342
SchI	GAGTC	1 cut(s)	27
SetI	ASST	9 cut(s)	52, 189, 207, 265, 280, 313, 323, 338, 409
SfaNI	GCATC	3 cut(s)	38, 95, 376
SfcI	CTRYAG	1 cut(s)	75
SmlI	CTYRAG	1 cut(s)	322
SmoI	CTYRAG	1 cut(s)	322
Sse9I	AATT	2 cut(s)	130, 225
SspMI	CTAG	3 cut(s)	123, 264, 404
StyI	CCWWGG	1 cut(s)	417
TasI	AATT	2 cut(s)	130, 225
TfiI	GAWTC	1 cut(s)	126
Tru1I	TTAA	2 cut(s)	215, 240
Tru9I	TTAA	2 cut(s)	215, 240
TscAI	CASTG	1 cut(s)	308
TseI	GCWGC	4 cut(s)	47, 318, 410, 413
TspDTI	ATGAA	1 cut(s)	46
TspGWI	ACGGA	1 cut(s)	42
TspRI	CASTG	1 cut(s)	308
XspI	CTAG	3 cut(s)	123, 264, 404

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.