Rh5CG182000

CCR4-NOT transcription complex subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0010598
Physical Location & Seq
Forward (+)
18084538 .. 18103876
19339 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG182000.1

Sequence Viewer

Length: 333 bp
ATGACCTTCTTATCTCCCTCATCAACGGCTCTAAACCTTGATGGCTCCTCACTTGAGGACGACGCCGTTTTGTTCTCCACCAGGGCTTTTGCGCTGGACGCCTTGCTGCAATTCCAGTCGGGGAAGTTTGATCAGTGCCTCACAGCCTTGCAGGAGTGCCTCAAGAGGAAGGCCGGCGATCCCAAAGCATTGGATTGTAGACGACTACGTATTTTAGTCATCACCCTCCTCAGTTTATATTCTCGGCACGCAGAGAAAGGAAATATCAGAATCGCAGATAGGGCTTTGCAGCTCATTTCCATGAGAATTGGTAAGAATGCAGAGCATTGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03018 map03018
Pfam Domains
Protein Families
TPR_8

Protein Analysis

110

Amino Acids

12.28

Weight (kDa)

8.96

Isoelectric Point (pI)

55.87

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 199
AclWI GGATC 1 cut(s) 173
AcyI GRCGYC 2 cut(s) 63, 99
AjnI CCWGG 1 cut(s) 80
AluBI AGCT 1 cut(s) 292
AluI AGCT 1 cut(s) 292
AlwI GGATC 1 cut(s) 173
AoxI GGCC 1 cut(s) 171
ApeKI GCWGC 2 cut(s) 106, 289
AspLEI GCGC 1 cut(s) 94
AsuHPI GGTGA 1 cut(s) 214
BbvI GCAGC 2 cut(s) 93, 301
BccI CCATC 1 cut(s) 35
BceAI ACGGC 2 cut(s) 42, 50
BciT130I CCWGG 1 cut(s) 82
BclI TGATCA 1 cut(s) 130
BisI GCNGC 2 cut(s) 107, 290
BlsI GCNGC 2 cut(s) 108, 291
Bme1390I CCNGG 1 cut(s) 82
BmiI GGNNCC 1 cut(s) 46
BmrFI CCNGG 1 cut(s) 82
BpuEI CTTGAG 2 cut(s) 74, 146
BsaAI YACGTR 1 cut(s) 209
BsaHI GRCGYC 2 cut(s) 63, 99
BsaJI CCNNGG 1 cut(s) 81
Bse118I RCCGGY 1 cut(s) 173
Bse1I ACTGG 1 cut(s) 115
BseBI CCWGG 1 cut(s) 82
BseDI CCNNGG 1 cut(s) 81
BseMII CTCAG 1 cut(s) 244
BseNI ACTGG 1 cut(s) 115
BseRI GAGGAG 2 cut(s) 37, 218
BseXI GCAGC 2 cut(s) 93, 301
BshFI GGCC 1 cut(s) 173
BsiSI CCGG 1 cut(s) 174
BsmI GAATGC 1 cut(s) 322
BsnI GGCC 1 cut(s) 173
Bsp143I GATC 2 cut(s) 130, 178
BspANI GGCC 1 cut(s) 173
BspCNI CTCAG 1 cut(s) 243
BspLI GGNNCC 1 cut(s) 46
BspPI GGATC 1 cut(s) 173
BsrFI RCCGGY 1 cut(s) 173
BsrI ACTGG 1 cut(s) 115
BssAI RCCGGY 1 cut(s) 173
BssECI CCNNGG 1 cut(s) 81
BssMI GATC 2 cut(s) 130, 178
BssNI GRCGYC 2 cut(s) 63, 99
Bst2UI CCWGG 1 cut(s) 82
BstACI GRCGYC 2 cut(s) 63, 99
BstBAI YACGTR 1 cut(s) 209
BstC8I GCNNGC 2 cut(s) 175, 249
BstDEI CTNAG 1 cut(s) 230
BstHHI GCGC 1 cut(s) 94
BstKTI GATC 2 cut(s) 133, 181
BstMBI GATC 2 cut(s) 130, 178
BstMWI GCNNNNNNNGC 2 cut(s) 98, 281
BstNI CCWGG 1 cut(s) 82
BstSCI CCNGG 1 cut(s) 80
BstSNI TACGTA 1 cut(s) 209
BstV1I GCAGC 2 cut(s) 93, 301
BstXI CCANNNNNNTGG 1 cut(s) 190
BsuRI GGCC 1 cut(s) 173
BtsIMutI CAGTG 1 cut(s) 140
Cac8I GCNNGC 2 cut(s) 175, 249
CfoI GCGC 1 cut(s) 94
Cfr10I RCCGGY 1 cut(s) 173
CseI GACGC 2 cut(s) 71, 107
CviAII CATG 1 cut(s) 301
CviJI RGCY 7 cut(s) 29, 45, 86, 146, 173, 284, 292
CviKI_1 RGCY 7 cut(s) 29, 45, 86, 146, 173, 284, 292
DdeI CTNAG 1 cut(s) 230
DpnI GATC 2 cut(s) 132, 180
DpnII GATC 2 cut(s) 130, 178
Eco105I TACGTA 1 cut(s) 209
EcoRII CCWGG 1 cut(s) 80
FaeI CATG 1 cut(s) 304
FaiI YATR 2 cut(s) 238, 302
FatI CATG 1 cut(s) 300
FbaI TGATCA 1 cut(s) 130
FblI GTMKAC 1 cut(s) 199
Fnu4HI GCNGC 2 cut(s) 107, 290
Fsp4HI GCNGC 2 cut(s) 107, 290
GlaI GCGC 1 cut(s) 93
GluI GCNGC 2 cut(s) 107, 290
HaeIII GGCC 1 cut(s) 173
HapII CCGG 1 cut(s) 174
HgaI GACGC 2 cut(s) 71, 107
HhaI GCGC 1 cut(s) 94
Hin1I GRCGYC 2 cut(s) 63, 99
Hin1II CATG 1 cut(s) 304
Hin6I GCGC 1 cut(s) 92
HinP1I GCGC 1 cut(s) 92
HinfI GANTC 1 cut(s) 270
HpaII CCGG 1 cut(s) 174
HphI GGTGA 1 cut(s) 214
Hpy166II GTNNAC 1 cut(s) 200
Hpy188I TCNGA 1 cut(s) 269
Hpy188III TCNNGA 1 cut(s) 163
Hpy8I GTNNAC 1 cut(s) 200
Hpy99I CGWCG 1 cut(s) 65
HpyAV CCTTC 2 cut(s) 16, 163
HpyCH4IV ACGT 1 cut(s) 208
HpyCH4V TGCA 4 cut(s) 109, 151, 289, 320
HpyF10VI GCNNNNNNNGC 2 cut(s) 98, 281
HpyF3I CTNAG 1 cut(s) 230
HpySE526I ACGT 1 cut(s) 208
Hsp92I GRCGYC 2 cut(s) 63, 99
Hsp92II CATG 1 cut(s) 304
HspAI GCGC 1 cut(s) 92
KroI GCCGGC 1 cut(s) 173
KroNI GCCGGC 1 cut(s) 175
Ksp22I TGATCA 1 cut(s) 130
Kzo9I GATC 2 cut(s) 130, 178
LmnI GCTCC 1 cut(s) 50
LpnPI CCDG 6 cut(s) 67, 80, 94, 128, 137, 187
Lsp1109I GCAGC 2 cut(s) 93, 301
MaeII ACGT 1 cut(s) 208
MalI GATC 2 cut(s) 132, 180
MboI GATC 2 cut(s) 130, 178
MluCI AATT 2 cut(s) 110, 306
MnlI CCTC 8 cut(s) 28, 49, 58, 149, 159, 170, 236, 239
MroNI GCCGGC 1 cut(s) 173
MslI CAYNNNNRTG 1 cut(s) 299
MspI CCGG 1 cut(s) 174
MspR9I CCNGG 1 cut(s) 82
Mva1269I GAATGC 1 cut(s) 322
MvaI CCWGG 1 cut(s) 82
MwoI GCNNNNNNNGC 2 cut(s) 98, 281
NaeI GCCGGC 1 cut(s) 175
NdeII GATC 2 cut(s) 130, 178
NgoMIV GCCGGC 1 cut(s) 173
NlaIII CATG 1 cut(s) 304
NlaIV GGNNCC 1 cut(s) 46
NmeAIII GCCGAG 1 cut(s) 223
PctI GAATGC 1 cut(s) 322
PdiI GCCGGC 1 cut(s) 175
PfeI GAWTC 1 cut(s) 270
PkrI GCNGC 2 cut(s) 108, 291
Ppu21I YACGTR 1 cut(s) 209
Psp6I CCWGG 1 cut(s) 80
PspGI CCWGG 1 cut(s) 80
PspN4I GGNNCC 1 cut(s) 46
RseI CAYNNNNRTG 1 cut(s) 299
SatI GCNGC 2 cut(s) 107, 290
Sau3AI GATC 2 cut(s) 130, 178
ScrFI CCNGG 1 cut(s) 82
SetI ASST 4 cut(s) 8, 39, 211, 294
SmiMI CAYNNNNRTG 1 cut(s) 299
SmlI CTYRAG 2 cut(s) 53, 161
SmoI CTYRAG 2 cut(s) 53, 161
SnaBI TACGTA 1 cut(s) 209
Sse9I AATT 2 cut(s) 110, 306
StyD4I CCNGG 1 cut(s) 80
TaiI ACGT 1 cut(s) 211
TasI AATT 2 cut(s) 110, 306
TfiI GAWTC 1 cut(s) 270
TscAI CASTG 1 cut(s) 140
TseI GCWGC 2 cut(s) 106, 289
TspRI CASTG 1 cut(s) 140
XmiI GTMKAC 1 cut(s) 199
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.