Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1B

Orthogroup ID

OG0010598

Physical Location & Seq

Genomic Coordinates Forward (+)

4205140 .. 4207415

Gene Structure 2276 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1BG031200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 525 bp

ATGGTTGGGCTTCTCGTGGCCTCACCCATCTTTGCATCCTTGGGAAAGAGGCTGATTGGACTTGGGTTATCTGTTTGGACATTTGCCACAGCCGGGTGTGGTAGTATGCTGGTTGGAGTCGGTGAGGCATCTTTGATAAGTCTTGCAGCTCCGTTCATTGATGACCATGCCCCTGCAGATCAGGCAACTAATCTGTTATATGTTGACGAGCCTATTGGTACTAGATTCAGTTATACTTTTGACAGAAGTGATATTTGTCACTCTGAAGATGGTGTTAGTAACAACCTCTCTGACTTCTTACAGAGTGCCTTCAAGTTTGTCGGTATTGAGCATGTTAACTATGATAAAAAGTTTCATTCATTGTTGAGATTGAAGTGTAAAGGTTGGAGCAGCTCAAGTCAAGTAAGCTCAGAGATCATTCTGAAAAAGAAGTTGGAACTGGAGGACAAGCTGTTGGATGCTCCACCAGACACACTAGGTGCTGCTGCCTTGGCACTACACTATGCAAGTGTGGGAGAACGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MFS_1 OATP

Protein Analysis

174

Amino Acids

18.71

Weight (kDa)

5.46

Isoelectric Point (pI)

38.64

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010598)

Species	Orthologous Gene IDs
malus_domestica	MD02G1023900.v1.1 MD15G1167300.v1.1
rosa_chinensis	RchiOBHm_Chr5g0023731
rosa_laevigata	RLG00000001463 RLG00000029246 RLG00000035752 RLG00000035756
rosa_roxburghii	Rroxscaffold_2G00095550 Rroxscaffold_4G00314150 Rroxscaffold_7G00182450
rosa_rugosa	Rorug04G0119400 Rorug05G0415100
rosa_samantha	Rh1AG155200 Rh1BG031200 Rh2AG030900 Rh2BG395900 Rh2CG467200 Rh5CG182000 Rh5CG371300 Rh7CG297800 Rh7CG397200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclI	AACGTT	1 cut(s)	520
AcuI	CTGAAG	1 cut(s)	285
AdeI	CACNNNGTG	1 cut(s)	479
AfaI	GTAC	1 cut(s)	220
AfiI	CCNNNNNNNGG	1 cut(s)	93
AgsI	TTSAA	2 cut(s)	313, 373
AjuI	GAANNNNNNNTTGG	2 cut(s)	416, 448
AluBI	AGCT	4 cut(s)	149, 393, 408, 451
AluI	AGCT	4 cut(s)	149, 393, 408, 451
AoxI	GGCC	1 cut(s)	18
ApeKI	GCWGC	4 cut(s)	146, 390, 482, 485
AsuC2I	CCSGG	1 cut(s)	94
AsuHPI	GGTGA	2 cut(s)	15, 134
BauI	CACGAG	1 cut(s)	14
BbvI	GCAGC	4 cut(s)	158, 402, 469, 472
BccI	CCATC	2 cut(s)	35, 263
BcnI	CCSGG	1 cut(s)	94
BfaI	CTAG	2 cut(s)	222, 476
BfmI	CTRYAG	1 cut(s)	174
BisI	GCNGC	4 cut(s)	147, 391, 483, 486
BlsI	GCNGC	4 cut(s)	148, 392, 484, 487
Bme1390I	CCNGG	1 cut(s)	94
BmrFI	CCNGG	1 cut(s)	94
BmsI	GCATC	3 cut(s)	44, 137, 448
BpmI	CTGGAG	1 cut(s)	461
BpuEI	CTTGAG	1 cut(s)	379
BpuMI	CCSGG	1 cut(s)	94
BsaJI	CCNNGG	2 cut(s)	39, 489
Bsc4I	CCNNNNNNNGG	1 cut(s)	93
Bse1I	ACTGG	1 cut(s)	444
BseDI	CCNNGG	2 cut(s)	39, 489
BseGI	GGATG	2 cut(s)	35, 463
BseLI	CCNNNNNNNGG	1 cut(s)	93
BseMII	CTCAG	1 cut(s)	423
BseNI	ACTGG	1 cut(s)	444
BseXI	GCAGC	4 cut(s)	158, 402, 469, 472
BshFI	GGCC	1 cut(s)	20
BsiSI	CCGG	1 cut(s)	93
BslI	CCNNNNNNNGG	1 cut(s)	93
BsnI	GGCC	1 cut(s)	20
Bsp143I	GATC	2 cut(s)	178, 414
BspANI	GGCC	1 cut(s)	20
BspCNI	CTCAG	1 cut(s)	422
BspMAI	CTGCAG	1 cut(s)	178
BsrI	ACTGG	1 cut(s)	444
BssECI	CCNNGG	2 cut(s)	39, 489
BssMI	GATC	2 cut(s)	178, 414
BssSI	CACGAG	1 cut(s)	14
BssT1I	CCWWGG	2 cut(s)	39, 489
Bst2BI	CACGAG	1 cut(s)	14
BstDEI	CTNAG	1 cut(s)	409
BstF5I	GGATG	2 cut(s)	35, 463
BstKTI	GATC	2 cut(s)	181, 417
BstMBI	GATC	2 cut(s)	178, 414
BstMWI	GCNNNNNNNGC	2 cut(s)	182, 491
BstNSI	RCATGY	1 cut(s)	335
BstSCI	CCNGG	1 cut(s)	92
BstSFI	CTRYAG	1 cut(s)	174
BstV1I	GCAGC	4 cut(s)	158, 402, 469, 472
BsuRI	GGCC	1 cut(s)	20
BtsCI	GGATG	2 cut(s)	35, 463
Csp6I	GTAC	1 cut(s)	219
CviAII	CATG	2 cut(s)	167, 332
CviJI	RGCY	9 cut(s)	10, 20, 52, 92, 149, 211, 393, 408, 451
CviKI_1	RGCY	9 cut(s)	10, 20, 52, 92, 149, 211, 393, 408, 451
CviQI	GTAC	1 cut(s)	219
DdeI	CTNAG	1 cut(s)	409
DpnI	GATC	2 cut(s)	180, 416
DpnII	GATC	2 cut(s)	178, 414
DraIII	CACNNNGTG	1 cut(s)	479
Eco130I	CCWWGG	2 cut(s)	39, 489
Eco57I	CTGAAG	1 cut(s)	285
EcoT14I	CCWWGG	2 cut(s)	39, 489
ErhI	CCWWGG	2 cut(s)	39, 489
FaeI	CATG	2 cut(s)	170, 335
FaiI	YATR	8 cut(s)	107, 168, 199, 201, 234, 333, 342, 504
FatI	CATG	2 cut(s)	166, 331
Fnu4HI	GCNGC	4 cut(s)	147, 391, 483, 486
FokI	GGATG	2 cut(s)	22, 470
Fsp4HI	GCNGC	4 cut(s)	147, 391, 483, 486
FspBI	CTAG	2 cut(s)	222, 476
GluI	GCNGC	4 cut(s)	147, 391, 483, 486
GsuI	CTGGAG	1 cut(s)	461
HaeIII	GGCC	1 cut(s)	20
HapII	CCGG	1 cut(s)	93
Hin1II	CATG	2 cut(s)	170, 335
HincII	GTYRAC	2 cut(s)	205, 337
HindII	GTYRAC	2 cut(s)	205, 337
HinfI	GANTC	2 cut(s)	117, 225
HpaI	GTTAAC	1 cut(s)	337
HpaII	CCGG	1 cut(s)	93
HphI	GGTGA	2 cut(s)	15, 134
Hpy166II	GTNNAC	2 cut(s)	205, 337
Hpy188I	TCNGA	4 cut(s)	265, 292, 412, 423
Hpy8I	GTNNAC	2 cut(s)	205, 337
HpyAV	CCTTC	1 cut(s)	319
HpyCH4IV	ACGT	1 cut(s)	520
HpyCH4V	TGCA	4 cut(s)	35, 146, 176, 506
HpyF10VI	GCNNNNNNNGC	2 cut(s)	182, 491
HpyF3I	CTNAG	1 cut(s)	409
HpySE526I	ACGT	1 cut(s)	520
Hsp92II	CATG	2 cut(s)	170, 335
KspAI	GTTAAC	1 cut(s)	337
Kzo9I	GATC	2 cut(s)	178, 414
LmnI	GCTCC	3 cut(s)	154, 387, 466
LpnPI	CCDG	6 cut(s)	95, 106, 167, 186, 425, 480
Lsp1109I	GCAGC	4 cut(s)	158, 402, 469, 472
LweI	GCATC	3 cut(s)	44, 137, 448
MaeI	CTAG	2 cut(s)	222, 476
MaeII	ACGT	1 cut(s)	520
MaeIII	GTNAC	2 cut(s)	257, 278
MalI	GATC	2 cut(s)	180, 416
MboI	GATC	2 cut(s)	178, 414
MboII	GAAGA	1 cut(s)	278
MlyI	GAGTC	1 cut(s)	126
MmeI	TCCRAC	4 cut(s)	94, 365, 414, 435
MnlI	CCTC	5 cut(s)	31, 42, 118, 296, 436
MseI	TTAA	1 cut(s)	336
MspI	CCGG	1 cut(s)	93
MspR9I	CCNGG	1 cut(s)	94
MwoI	GCNNNNNNNGC	2 cut(s)	182, 491
NciI	CCSGG	1 cut(s)	94
NdeII	GATC	2 cut(s)	178, 414
NlaIII	CATG	2 cut(s)	170, 335
NmuCI	GTSAC	1 cut(s)	257
NspI	RCATGY	1 cut(s)	335
PfeI	GAWTC	1 cut(s)	225
PkrI	GCNGC	4 cut(s)	148, 392, 484, 487
PleI	GAGTC	1 cut(s)	125
PpsI	GAGTC	1 cut(s)	125
Psp1406I	AACGTT	1 cut(s)	520
PstI	CTGCAG	1 cut(s)	178
RsaI	GTAC	1 cut(s)	220
RsaNI	GTAC	1 cut(s)	219
SaqAI	TTAA	1 cut(s)	336
SatI	GCNGC	4 cut(s)	147, 391, 483, 486
Sau3AI	GATC	2 cut(s)	178, 414
SchI	GAGTC	1 cut(s)	126
ScrFI	CCNGG	1 cut(s)	94
SetI	ASST	8 cut(s)	151, 288, 385, 395, 410, 453, 481, 523
SfaNI	GCATC	3 cut(s)	44, 137, 448
SfcI	CTRYAG	1 cut(s)	174
SmlI	CTYRAG	1 cut(s)	394
SmoI	CTYRAG	1 cut(s)	394
SspMI	CTAG	2 cut(s)	222, 476
StyD4I	CCNGG	1 cut(s)	92
StyI	CCWWGG	2 cut(s)	39, 489
TaiI	ACGT	1 cut(s)	523
TfiI	GAWTC	1 cut(s)	225
Tru1I	TTAA	1 cut(s)	336
Tru9I	TTAA	1 cut(s)	336
TseFI	GTSAC	1 cut(s)	257
TseI	GCWGC	4 cut(s)	146, 390, 482, 485
Tsp45I	GTSAC	1 cut(s)	257
TspDTI	ATGAA	3 cut(s)	145, 344, 348
TspGWI	ACGGA	1 cut(s)	141
XceI	RCATGY	1 cut(s)	335
XspI	CTAG	2 cut(s)	222, 476

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.