Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0010598

Physical Location & Seq

Genomic Coordinates Reverse (-)

71243588 .. 71245652

Gene Structure 2065 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000035752

Sequence Viewer

CDS Protein Promoter (2k)

Length: 375 bp

ATGTGTCAGTGGATTGATTTGCCTGAATGGCCTCCTTTATCTCCCTCATCAACGGCTTCGAATCGGGATGACTCCTCACCTGAGGACGTCGCCCTTTTGTCCTCCACCAAGGCTTTTACGCAGGACGCCTTGCTGCAATTCCAATTAGGGAAGTTCGATCAGTGCCTCATGGCCTTGCAGGAGTGGCTCAAGAGGAAGGTCGGCGATCCCAAAAACCCCAAAGCAGCAATCTCAGCTCCAAAGCCTTCCTGGTTCTCCCCAGAAAGGTATGGGGATTTTAAATCGAACAACTTTCAAGATGGTGTTCTATCATCTGCATTTATGGTTGGGCTTCTCGTGGCCTCACCCATCTTTGCATCCTTGGGAAAGAGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03018 map03018

Pfam Domains

Protein Families

TPR_8

Protein Analysis

125

Amino Acids

13.7

Weight (kDa)

6.19

Isoelectric Point (pI)

50.97

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Style Settings

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Align Labels (Cladogram)

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Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010598)

Species	Orthologous Gene IDs
malus_domestica	MD02G1023900.v1.1 MD15G1167300.v1.1
rosa_chinensis	RchiOBHm_Chr5g0023731
rosa_laevigata	RLG00000001463 RLG00000029246 RLG00000035752 RLG00000035756
rosa_roxburghii	Rroxscaffold_2G00095550 Rroxscaffold_4G00314150 Rroxscaffold_7G00182450
rosa_rugosa	Rorug04G0119400 Rorug05G0415100
rosa_samantha	Rh1AG155200 Rh1BG031200 Rh2AG030900 Rh2BG395900 Rh2CG467200 Rh5CG182000 Rh5CG371300 Rh7CG297800 Rh7CG397200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	90
AclWI	GGATC	1 cut(s)	200
AcyI	GRCGYC	2 cut(s)	87, 126
AfiI	CCNNNNNNNGG	1 cut(s)	264
AgsI	TTSAA	1 cut(s)	296
AjnI	CCWGG	1 cut(s)	248
AluBI	AGCT	1 cut(s)	236
AluI	AGCT	1 cut(s)	236
AlwI	GGATC	1 cut(s)	200
AoxI	GGCC	3 cut(s)	29, 171, 339
ApeKI	GCWGC	2 cut(s)	133, 224
AsuHPI	GGTGA	2 cut(s)	69, 336
AsuII	TTCGAA	1 cut(s)	59
AxyI	CCTNAGG	1 cut(s)	81
BauI	CACGAG	1 cut(s)	335
BbvI	GCAGC	2 cut(s)	120, 236
BccI	CCATC	2 cut(s)	293, 356
BceAI	ACGGC	1 cut(s)	69
BciT130I	CCWGG	1 cut(s)	250
BglI	GCCNNNNNGGC	1 cut(s)	28
BisI	GCNGC	2 cut(s)	134, 225
BlsI	GCNGC	2 cut(s)	135, 226
Bme1390I	CCNGG	1 cut(s)	250
BmrFI	CCNGG	1 cut(s)	250
BmsI	GCATC	1 cut(s)	365
Bpu14I	TTCGAA	1 cut(s)	59
BpuEI	CTTGAG	1 cut(s)	173
BsaHI	GRCGYC	2 cut(s)	87, 126
BsaJI	CCNNGG	2 cut(s)	108, 360
Bsc4I	CCNNNNNNNGG	1 cut(s)	264
Bse21I	CCTNAGG	1 cut(s)	81
BseBI	CCWGG	1 cut(s)	250
BseDI	CCNNGG	2 cut(s)	108, 360
BseGI	GGATG	2 cut(s)	73, 356
BseLI	CCNNNNNNNGG	1 cut(s)	264
BseMII	CTCAG	2 cut(s)	72, 246
BseRI	GAGGAG	1 cut(s)	64
BseXI	GCAGC	2 cut(s)	120, 236
BshFI	GGCC	3 cut(s)	31, 173, 341
BslI	CCNNNNNNNGG	1 cut(s)	264
BsnI	GGCC	3 cut(s)	31, 173, 341
Bsp119I	TTCGAA	1 cut(s)	59
Bsp143I	GATC	2 cut(s)	157, 205
BspANI	GGCC	3 cut(s)	31, 173, 341
BspCNI	CTCAG	2 cut(s)	73, 245
BspPI	GGATC	1 cut(s)	200
BspT104I	TTCGAA	1 cut(s)	59
BssECI	CCNNGG	2 cut(s)	108, 360
BssMI	GATC	2 cut(s)	157, 205
BssNI	GRCGYC	2 cut(s)	87, 126
BssSI	CACGAG	1 cut(s)	335
BssT1I	CCWWGG	2 cut(s)	108, 360
Bst2BI	CACGAG	1 cut(s)	335
Bst2UI	CCWGG	1 cut(s)	250
BstACI	GRCGYC	2 cut(s)	87, 126
BstBI	TTCGAA	1 cut(s)	59
BstDEI	CTNAG	2 cut(s)	81, 232
BstF5I	GGATG	2 cut(s)	73, 356
BstKTI	GATC	2 cut(s)	160, 208
BstMBI	GATC	2 cut(s)	157, 205
BstMWI	GCNNNNNNNGC	3 cut(s)	28, 184, 233
BstNI	CCWGG	1 cut(s)	250
BstSCI	CCNGG	1 cut(s)	248
BstV1I	GCAGC	2 cut(s)	120, 236
Bsu36I	CCTNAGG	1 cut(s)	81
BsuRI	GGCC	3 cut(s)	31, 173, 341
BtsCI	GGATG	2 cut(s)	73, 356
BtsIMutI	CAGTG	2 cut(s)	14, 167
CseI	GACGC	1 cut(s)	134
CviAII	CATG	1 cut(s)	169
CviJI	RGCY	9 cut(s)	31, 56, 113, 173, 187, 236, 244, 331, 341
CviKI_1	RGCY	9 cut(s)	31, 56, 113, 173, 187, 236, 244, 331, 341
DdeI	CTNAG	2 cut(s)	81, 232
DpnI	GATC	2 cut(s)	159, 207
DpnII	GATC	2 cut(s)	157, 205
DraI	TTTAAA	1 cut(s)	280
Eco130I	CCWWGG	2 cut(s)	108, 360
Eco81I	CCTNAGG	1 cut(s)	81
EcoRII	CCWGG	1 cut(s)	248
EcoT14I	CCWWGG	2 cut(s)	108, 360
ErhI	CCWWGG	2 cut(s)	108, 360
FaeI	CATG	1 cut(s)	172
FaiI	YATR	3 cut(s)	170, 270, 323
FatI	CATG	1 cut(s)	168
Fnu4HI	GCNGC	2 cut(s)	134, 225
FokI	GGATG	2 cut(s)	80, 343
Fsp4HI	GCNGC	2 cut(s)	134, 225
GluI	GCNGC	2 cut(s)	134, 225
HaeIII	GGCC	3 cut(s)	31, 173, 341
HgaI	GACGC	1 cut(s)	134
Hin1I	GRCGYC	2 cut(s)	87, 126
Hin1II	CATG	1 cut(s)	172
HinfI	GANTC	2 cut(s)	61, 71
HphI	GGTGA	2 cut(s)	69, 336
Hpy188III	TCNNGA	3 cut(s)	65, 190, 296
Hpy99I	CGWCG	1 cut(s)	92
HpyAV	CCTTC	2 cut(s)	190, 255
HpyCH4IV	ACGT	1 cut(s)	87
HpyCH4V	TGCA	4 cut(s)	136, 178, 317, 356
HpyF10VI	GCNNNNNNNGC	3 cut(s)	28, 184, 233
HpyF3I	CTNAG	2 cut(s)	81, 232
HpySE526I	ACGT	1 cut(s)	87
Hsp92I	GRCGYC	2 cut(s)	87, 126
Hsp92II	CATG	1 cut(s)	172
Kzo9I	GATC	2 cut(s)	157, 205
LmnI	GCTCC	1 cut(s)	241
LpnPI	CCDG	7 cut(s)	36, 93, 107, 164, 235, 262, 273
Lsp1109I	GCAGC	2 cut(s)	120, 236
LweI	GCATC	1 cut(s)	365
MaeII	ACGT	1 cut(s)	87
MalI	GATC	2 cut(s)	159, 207
MboI	GATC	2 cut(s)	157, 205
MluCI	AATT	2 cut(s)	137, 143
MlyI	GAGTC	1 cut(s)	65
MnlI	CCTC	9 cut(s)	42, 55, 76, 85, 112, 176, 186, 352, 363
MseI	TTAA	1 cut(s)	279
MspR9I	CCNGG	1 cut(s)	250
MvaI	CCWGG	1 cut(s)	250
MwoI	GCNNNNNNNGC	3 cut(s)	28, 184, 233
NdeII	GATC	2 cut(s)	157, 205
NlaIII	CATG	1 cut(s)	172
NspV	TTCGAA	1 cut(s)	59
PfeI	GAWTC	1 cut(s)	61
PkrI	GCNGC	2 cut(s)	135, 226
PleI	GAGTC	1 cut(s)	65
PpsI	GAGTC	1 cut(s)	65
Psp6I	CCWGG	1 cut(s)	248
PspGI	CCWGG	1 cut(s)	248
SaqAI	TTAA	1 cut(s)	279
SatI	GCNGC	2 cut(s)	134, 225
Sau3AI	GATC	2 cut(s)	157, 205
SchI	GAGTC	1 cut(s)	65
ScrFI	CCNGG	1 cut(s)	250
SetI	ASST	6 cut(s)	82, 90, 201, 238, 269, 374
SfaNI	GCATC	1 cut(s)	365
SfuI	TTCGAA	1 cut(s)	59
SmlI	CTYRAG	1 cut(s)	188
SmoI	CTYRAG	1 cut(s)	188
Sse9I	AATT	2 cut(s)	137, 143
StyD4I	CCNGG	1 cut(s)	248
StyI	CCWWGG	2 cut(s)	108, 360
TaiI	ACGT	1 cut(s)	90
TaqI	TCGA	3 cut(s)	59, 156, 284
TasI	AATT	2 cut(s)	137, 143
TfiI	GAWTC	1 cut(s)	61
Tru1I	TTAA	1 cut(s)	279
Tru9I	TTAA	1 cut(s)	279
TscAI	CASTG	2 cut(s)	14, 167
TseI	GCWGC	2 cut(s)	133, 224
TspRI	CASTG	2 cut(s)	14, 167
XcmI	CCANNNNNNNNNTGG	1 cut(s)	246
ZraI	GACGTC	1 cut(s)	88

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.