Rh7CG297800

sphingolipid transporter spinster homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0010598
Physical Location & Seq
Forward (+)
30590174 .. 30594077
3904 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG297800.1

Sequence Viewer

Length: 474 bp
ATGACAAAGAACCCCAAAGCAGCAATCTCAGCTCCAAAGCCTTCTTGGTTCTCCCCGGAAAGGGGGGATTTTAAATTGAACAACTTTCAAGATGGTGTTCTATCATCTGCGTTTATGGTTGGGCTTCTCGTGGCCTCACCCATCTTTGCATCCTTGGGAAAGAGGCTAGTTGGAGTCGGTGAGGCATCTTTGATAAGTCTTGCAGCTCCATTCATTGATGACCATGCCCCTGCAGATCAGGCATCTAATCTATTGTATGTTGACCAGCCTATTGGTACTAGATTCAGTTATACTTTTGACAGAAGTGATATTTGTCACTCTGAAGATGGTGTTAGTAACAACCTCTCCGACTTCTTACAGGTATGTCATTTAAAGGATGTAATTGATCAAATCATTAAGTTTTTTCGGAGTAATACAGCTAGTCAGAAGATAGCTATGGATACTGCAACTGCTATGCAGCCAAAGGAAAGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
MFS_1 OATP

Protein Analysis

157

Amino Acids

17.07

Weight (kDa)

5.5

Isoelectric Point (pI)

34.7

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Peptidase_S10 PF00450 80 - 120 8.5e-06 Serine carboxypeptidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcuI CTGAAG 1 cut(s) 342
AfaI GTAC 1 cut(s) 277
AfiI CCNNNNNNNGG 3 cut(s) 60, 61, 62
AgsI TTSAA 2 cut(s) 79, 89
AluBI AGCT 4 cut(s) 32, 206, 419, 434
AluI AGCT 4 cut(s) 32, 206, 419, 434
AoxI GGCC 1 cut(s) 132
ApeKI GCWGC 3 cut(s) 20, 203, 457
AsuC2I CCSGG 1 cut(s) 56
AsuHPI GGTGA 2 cut(s) 129, 191
BauI CACGAG 1 cut(s) 128
BbvI GCAGC 3 cut(s) 32, 215, 469
BccI CCATC 3 cut(s) 86, 149, 320
BciVI GTATCC 1 cut(s) 433
BclI TGATCA 1 cut(s) 385
BcnI CCSGG 1 cut(s) 56
BfaI CTAG 3 cut(s) 167, 279, 420
BfmI CTRYAG 1 cut(s) 231
BfuI GTATCC 1 cut(s) 433
BisI GCNGC 3 cut(s) 21, 204, 458
BlsI GCNGC 3 cut(s) 22, 205, 459
Bme1390I CCNGG 1 cut(s) 56
BmrFI CCNGG 1 cut(s) 56
BmsI GCATC 3 cut(s) 158, 194, 251
BpuMI CCSGG 1 cut(s) 56
BsaJI CCNNGG 2 cut(s) 54, 153
BsaXI ACNNNNNCTCC 2 cut(s) 329, 359
Bsc4I CCNNNNNNNGG 3 cut(s) 60, 61, 62
BseDI CCNNGG 2 cut(s) 54, 153
BseGI GGATG 2 cut(s) 149, 382
BseLI CCNNNNNNNGG 3 cut(s) 60, 61, 62
BseMII CTCAG 1 cut(s) 42
BseXI GCAGC 3 cut(s) 32, 215, 469
BshFI GGCC 1 cut(s) 134
BsiSI CCGG 1 cut(s) 56
BslI CCNNNNNNNGG 3 cut(s) 60, 61, 62
BsnI GGCC 1 cut(s) 134
Bsp143I GATC 2 cut(s) 235, 385
BspANI GGCC 1 cut(s) 134
BspCNI CTCAG 1 cut(s) 41
BspMAI CTGCAG 1 cut(s) 235
BssECI CCNNGG 2 cut(s) 54, 153
BssMI GATC 2 cut(s) 235, 385
BssSI CACGAG 1 cut(s) 128
BssT1I CCWWGG 1 cut(s) 153
Bst2BI CACGAG 1 cut(s) 128
BstDEI CTNAG 1 cut(s) 28
BstF5I GGATG 2 cut(s) 149, 382
BstKTI GATC 2 cut(s) 238, 388
BstMBI GATC 2 cut(s) 235, 385
BstMWI GCNNNNNNNGC 2 cut(s) 29, 239
BstSCI CCNGG 1 cut(s) 54
BstSFI CTRYAG 1 cut(s) 231
BstV1I GCAGC 3 cut(s) 32, 215, 469
BstXI CCANNNNNNTGG 1 cut(s) 272
BsuI GTATCC 1 cut(s) 433
BsuRI GGCC 1 cut(s) 134
BtsCI GGATG 2 cut(s) 149, 382
Csp6I GTAC 1 cut(s) 276
CviAII CATG 1 cut(s) 224
CviQI GTAC 1 cut(s) 276
DdeI CTNAG 1 cut(s) 28
DpnI GATC 2 cut(s) 237, 387
DpnII GATC 2 cut(s) 235, 385
DraI TTTAAA 2 cut(s) 73, 372
Eco130I CCWWGG 1 cut(s) 153
Eco57I CTGAAG 1 cut(s) 342
EcoT14I CCWWGG 1 cut(s) 153
ErhI CCWWGG 1 cut(s) 153
FaeI CATG 1 cut(s) 227
FaiI YATR 7 cut(s) 116, 225, 258, 291, 364, 437, 455
FatI CATG 1 cut(s) 223
FbaI TGATCA 1 cut(s) 385
Fnu4HI GCNGC 3 cut(s) 21, 204, 458
FokI GGATG 2 cut(s) 136, 389
Fsp4HI GCNGC 3 cut(s) 21, 204, 458
FspBI CTAG 3 cut(s) 167, 279, 420
GluI GCNGC 3 cut(s) 21, 204, 458
HaeIII GGCC 1 cut(s) 134
HapII CCGG 1 cut(s) 56
Hin1II CATG 1 cut(s) 227
HincII GTYRAC 1 cut(s) 262
HindII GTYRAC 1 cut(s) 262
HinfI GANTC 2 cut(s) 174, 282
HpaII CCGG 1 cut(s) 56
HphI GGTGA 2 cut(s) 129, 191
Hpy166II GTNNAC 1 cut(s) 262
Hpy188I TCNGA 4 cut(s) 322, 349, 408, 426
Hpy188III TCNNGA 1 cut(s) 89
Hpy8I GTNNAC 1 cut(s) 262
HpyAV CCTTC 1 cut(s) 51
HpyCH4V TGCA 5 cut(s) 149, 203, 233, 446, 457
HpyF10VI GCNNNNNNNGC 2 cut(s) 29, 239
HpyF3I CTNAG 1 cut(s) 28
Hsp92II CATG 1 cut(s) 227
Ksp22I TGATCA 1 cut(s) 385
Kzo9I GATC 2 cut(s) 235, 385
LmnI GCTCC 2 cut(s) 37, 211
LpnPI CCDG 5 cut(s) 69, 224, 243, 278, 344
Lsp1109I GCAGC 3 cut(s) 32, 215, 469
LweI GCATC 3 cut(s) 158, 194, 251
MaeI CTAG 3 cut(s) 167, 279, 420
MaeIII GTNAC 2 cut(s) 314, 335
MalI GATC 2 cut(s) 237, 387
MboI GATC 2 cut(s) 235, 385
MboII GAAGA 2 cut(s) 335, 439
MluCI AATT 2 cut(s) 74, 381
MlyI GAGTC 1 cut(s) 183
MmeI TCCRAC 2 cut(s) 151, 372
MnlI CCTC 4 cut(s) 145, 156, 175, 353
MseI TTAA 4 cut(s) 72, 371, 396, 472
MspI CCGG 1 cut(s) 56
MspR9I CCNGG 1 cut(s) 56
MwoI GCNNNNNNNGC 2 cut(s) 29, 239
NciI CCSGG 1 cut(s) 56
NdeII GATC 2 cut(s) 235, 385
NlaIII CATG 1 cut(s) 227
NmuCI GTSAC 1 cut(s) 314
PfeI GAWTC 1 cut(s) 282
PkrI GCNGC 3 cut(s) 22, 205, 459
PleI GAGTC 1 cut(s) 182
PpsI GAGTC 1 cut(s) 182
PstI CTGCAG 1 cut(s) 235
RsaI GTAC 1 cut(s) 277
RsaNI GTAC 1 cut(s) 276
SaqAI TTAA 4 cut(s) 72, 371, 396, 472
SatI GCNGC 3 cut(s) 21, 204, 458
Sau3AI GATC 2 cut(s) 235, 385
SchI GAGTC 1 cut(s) 183
ScrFI CCNGG 1 cut(s) 56
SetI ASST 6 cut(s) 34, 208, 345, 363, 421, 436
SfaNI GCATC 3 cut(s) 158, 194, 251
SfcI CTRYAG 1 cut(s) 231
Sse9I AATT 2 cut(s) 74, 381
SspMI CTAG 3 cut(s) 167, 279, 420
StyD4I CCNGG 1 cut(s) 54
StyI CCWWGG 1 cut(s) 153
TasI AATT 2 cut(s) 74, 381
TfiI GAWTC 1 cut(s) 282
Tru1I TTAA 4 cut(s) 72, 371, 396, 472
Tru9I TTAA 4 cut(s) 72, 371, 396, 472
TseFI GTSAC 1 cut(s) 314
TseI GCWGC 3 cut(s) 20, 203, 457
Tsp45I GTSAC 1 cut(s) 314
TspDTI ATGAA 1 cut(s) 202
XcmI CCANNNNNNNNNTGG 1 cut(s) 42
XspI CTAG 3 cut(s) 167, 279, 420
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.