Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0010598

Physical Location & Seq

Genomic Coordinates Reverse (-)

38044216 .. 38048006

Gene Structure 3791 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00314150.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 453 bp

ATGCCTTGGGTCTTGATTCATATCGATGGGGATTTCGAGGCCTGGCTTGAGGATGGTGTTCCGTGGTATTGCAAGTTGCCGCTGCGCGGCTCTGCGTTTGATGAGGGTGGTCAGTCAAGTCTTCAAGTGAAAGACTTTAAGCCAAAGGCAAATTGCAAAGATTATGGAAGTTGTTTGGTCAATGACGACTTTGAATGTTGCCTTGTGCAAGACTTTGAAAAGTATAGAGGACATAGCACTTTGCTTAGTTCGAGACATCCTTATAATGCTGAGAGTGCGAATGAATATACGGAAGATAAAGATGTCAATTGGAAAGTCCGAAGAGCAGCAGCTAAATGCTTAGCGGCATTAATTGTATCTCGTCCCGAGATGCTTGCCAAGCTATATGAGGAGGCCAACCTCACCGCCGGCGACTATGCTCATGGGAAGAGCTACGGTGTAGTACTCCCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003002 GO:0003006 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005886 GO:0006464 GO:0006807 GO:0007275 GO:0007389 GO:0008150 GO:0008152 GO:0009719 GO:0009725 GO:0009733 GO:0009791 GO:0009987 GO:0010033 GO:0010051 GO:0010228 GO:0010265 GO:0016020 GO:0016043 GO:0016567 GO:0019538 GO:0022414 GO:0022607 GO:0030312 GO:0032446 GO:0032501 GO:0032502 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0061458 GO:0065003 GO:0070647 GO:0071704 GO:0071840 GO:0071944 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TIP120

Protein Analysis

150

Amino Acids

16.9

Weight (kDa)

5.18

Isoelectric Point (pI)

45.78

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010598)

Species	Orthologous Gene IDs
malus_domestica	MD02G1023900.v1.1 MD15G1167300.v1.1
rosa_chinensis	RchiOBHm_Chr5g0023731
rosa_laevigata	RLG00000001463 RLG00000029246 RLG00000035752 RLG00000035756
rosa_roxburghii	Rroxscaffold_2G00095550 Rroxscaffold_4G00314150 Rroxscaffold_7G00182450
rosa_rugosa	Rorug04G0119400 Rorug05G0415100
rosa_samantha	Rh1AG155200 Rh1BG031200 Rh2AG030900 Rh2BG395900 Rh2CG467200 Rh5CG182000 Rh5CG371300 Rh7CG297800 Rh7CG397200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	264
AccII	CGCG	1 cut(s)	87
AciI	CCGC	4 cut(s)	80, 87, 344, 405
AfaI	GTAC	1 cut(s)	444
AfiI	CCNNNNNNNGG	1 cut(s)	86
AgsI	TTSAA	3 cut(s)	125, 194, 218
AjnI	CCWGG	1 cut(s)	41
AluBI	AGCT	3 cut(s)	332, 382, 432
AluI	AGCT	3 cut(s)	332, 382, 432
Alw26I	GTCTC	1 cut(s)	247
Ama87I	CYCGRG	1 cut(s)	365
AoxI	GGCC	2 cut(s)	39, 393
ApeKI	GCWGC	3 cut(s)	82, 326, 329
AseI	ATTAAT	1 cut(s)	350
AspLEI	GCGC	1 cut(s)	87
AsuHPI	GGTGA	1 cut(s)	394
AvaI	CYCGRG	1 cut(s)	365
BbsI	GAAGAC	1 cut(s)	113
BbvI	GCAGC	3 cut(s)	69, 338, 341
BccI	CCATC	2 cut(s)	20, 47
BcgI	CGANNNNNNTGC	2 cut(s)	356, 390
BciT130I	CCWGG	1 cut(s)	43
BcoDI	GTCTC	1 cut(s)	247
BfaI	CTAG	1 cut(s)	451
BisI	GCNGC	6 cut(s)	80, 83, 88, 327, 330, 345
BlpI	GCTNAGC	1 cut(s)	340
BlsI	GCNGC	6 cut(s)	81, 84, 89, 328, 331, 346
BmcAI	AGTACT	1 cut(s)	444
Bme1390I	CCNGG	1 cut(s)	43
BmeT110I	CYCGRG	1 cut(s)	365
BmrFI	CCNGG	1 cut(s)	43
BmsI	GCATC	1 cut(s)	360
BpiI	GAAGAC	1 cut(s)	113
Bpu1102I	GCTNAGC	1 cut(s)	340
BpuEI	CTTGAG	1 cut(s)	68
Bsa29I	ATCGAT	1 cut(s)	24
BsaBI	GATNNNNATC	1 cut(s)	20
BsaJI	CCNNGG	2 cut(s)	5, 62
Bsc4I	CCNNNNNNNGG	1 cut(s)	86
Bse118I	RCCGGY	1 cut(s)	407
Bse8I	GATNNNNATC	1 cut(s)	20
BseBI	CCWGG	1 cut(s)	43
BseCI	ATCGAT	1 cut(s)	24
BseDI	CCNNGG	2 cut(s)	5, 62
BseGI	GGATG	2 cut(s)	58, 256
BseJI	GATNNNNATC	1 cut(s)	20
BseLI	CCNNNNNNNGG	1 cut(s)	86
BseMII	CTCAG	1 cut(s)	261
BseRI	GAGGAG	1 cut(s)	404
BseXI	GCAGC	3 cut(s)	69, 338, 341
Bsh1236I	CGCG	1 cut(s)	87
BshFI	GGCC	2 cut(s)	41, 395
BshVI	ATCGAT	1 cut(s)	24
BsiHKCI	CYCGRG	1 cut(s)	365
BsiSI	CCGG	1 cut(s)	408
BslFI	GGGAC	1 cut(s)	348
BslI	CCNNNNNNNGG	1 cut(s)	86
BsmAI	GTCTC	1 cut(s)	247
BsmFI	GGGAC	1 cut(s)	348
BsnI	GGCC	2 cut(s)	41, 395
BsoBI	CYCGRG	1 cut(s)	365
Bsp1720I	GCTNAGC	1 cut(s)	340
BspACI	CCGC	4 cut(s)	80, 87, 344, 405
BspANI	GGCC	2 cut(s)	41, 395
BspCNI	CTCAG	1 cut(s)	262
BspDI	ATCGAT	1 cut(s)	24
BspFNI	CGCG	1 cut(s)	87
BspQI	GCTCTTC	2 cut(s)	316, 422
BsrFI	RCCGGY	1 cut(s)	407
BssAI	RCCGGY	1 cut(s)	407
BssECI	CCNNGG	2 cut(s)	5, 62
BssT1I	CCWWGG	1 cut(s)	5
Bst2UI	CCWGG	1 cut(s)	43
Bst4CI	ACNGT	1 cut(s)	437
Bst6I	CTCTTC	2 cut(s)	316, 422
BstC8I	GCNNGC	2 cut(s)	375, 409
BstDEI	CTNAG	3 cut(s)	245, 270, 340
BstDSI	CCRYGG	1 cut(s)	62
BstF5I	GGATG	2 cut(s)	58, 256
BstFNI	CGCG	1 cut(s)	87
BstHHI	GCGC	1 cut(s)	87
BstMAI	GTCTC	1 cut(s)	247
BstMWI	GCNNNNNNNGC	2 cut(s)	275, 379
BstNI	CCWGG	1 cut(s)	43
BstSCI	CCNGG	1 cut(s)	41
BstUI	CGCG	1 cut(s)	87
BstV1I	GCAGC	3 cut(s)	69, 338, 341
BstV2I	GAAGAC	1 cut(s)	113
Bsu15I	ATCGAT	1 cut(s)	24
BsuRI	GGCC	2 cut(s)	41, 395
BsuTUI	ATCGAT	1 cut(s)	24
BtgI	CCRYGG	1 cut(s)	62
BtsCI	GGATG	2 cut(s)	58, 256
Cac8I	GCNNGC	2 cut(s)	375, 409
CfoI	GCGC	1 cut(s)	87
Cfr10I	RCCGGY	1 cut(s)	407
ClaI	ATCGAT	1 cut(s)	24
Csp6I	GTAC	1 cut(s)	443
CviAII	CATG	1 cut(s)	422
CviJI	RGCY	8 cut(s)	41, 46, 90, 142, 332, 382, 395, 432
CviKI_1	RGCY	8 cut(s)	41, 46, 90, 142, 332, 382, 395, 432
CviQI	GTAC	1 cut(s)	443
DdeI	CTNAG	3 cut(s)	245, 270, 340
Eam1104I	CTCTTC	2 cut(s)	316, 422
EarI	CTCTTC	2 cut(s)	316, 422
Eco130I	CCWWGG	1 cut(s)	5
Eco147I	AGGCCT	1 cut(s)	41
Eco88I	CYCGRG	1 cut(s)	365
EcoRII	CCWGG	1 cut(s)	41
EcoT14I	CCWWGG	1 cut(s)	5
ErhI	CCWWGG	1 cut(s)	5
FaeI	CATG	1 cut(s)	425
FaqI	GGGAC	1 cut(s)	348
FatI	CATG	1 cut(s)	421
Fnu4HI	GCNGC	6 cut(s)	80, 83, 88, 327, 330, 345
FokI	GGATG	2 cut(s)	65, 243
Fsp4HI	GCNGC	6 cut(s)	80, 83, 88, 327, 330, 345
FspBI	CTAG	1 cut(s)	451
GlaI	GCGC	1 cut(s)	86
GluI	GCNGC	6 cut(s)	80, 83, 88, 327, 330, 345
HaeIII	GGCC	2 cut(s)	41, 395
HapII	CCGG	1 cut(s)	408
HhaI	GCGC	1 cut(s)	87
Hin1II	CATG	1 cut(s)	425
Hin6I	GCGC	1 cut(s)	85
HinP1I	GCGC	1 cut(s)	85
HinfI	GANTC	1 cut(s)	16
HpaII	CCGG	1 cut(s)	408
HphI	GGTGA	1 cut(s)	394
Hpy188I	TCNGA	1 cut(s)	320
Hpy188III	TCNNGA	3 cut(s)	13, 252, 365
HpyCH4III	ACNGT	1 cut(s)	437
HpyCH4V	TGCA	3 cut(s)	72, 156, 208
HpyF10VI	GCNNNNNNNGC	2 cut(s)	275, 379
HpyF3I	CTNAG	3 cut(s)	245, 270, 340
Hsp92II	CATG	1 cut(s)	425
HspAI	GCGC	1 cut(s)	85
KroI	GCCGGC	1 cut(s)	407
KroNI	GCCGGC	1 cut(s)	409
LguI	GCTCTTC	2 cut(s)	316, 422
LpnPI	CCDG	3 cut(s)	28, 55, 421
Lsp1109I	GCAGC	3 cut(s)	69, 338, 341
LweI	GCATC	1 cut(s)	360
MaeI	CTAG	1 cut(s)	451
MboII	GAAGA	4 cut(s)	113, 305, 333, 439
MfeI	CAATTG	1 cut(s)	307
MluCI	AATT	3 cut(s)	151, 307, 351
MnlI	CCTC	7 cut(s)	31, 43, 97, 221, 382, 385, 410
MreI	CGCCGGCG	1 cut(s)	407
MroNI	GCCGGC	1 cut(s)	407
MseI	TTAA	2 cut(s)	138, 350
MslI	CAYNNNNRTG	1 cut(s)	24
MspA1I	CMGCKG	1 cut(s)	82
MspI	CCGG	1 cut(s)	408
MspR9I	CCNGG	1 cut(s)	43
MunI	CAATTG	1 cut(s)	307
MvaI	CCWGG	1 cut(s)	43
MvnI	CGCG	1 cut(s)	87
MwoI	GCNNNNNNNGC	2 cut(s)	275, 379
NaeI	GCCGGC	1 cut(s)	409
NgoMIV	GCCGGC	1 cut(s)	407
NlaIII	CATG	1 cut(s)	425
PceI	AGGCCT	1 cut(s)	41
PciSI	GCTCTTC	2 cut(s)	316, 422
PdiI	GCCGGC	1 cut(s)	409
PfeI	GAWTC	1 cut(s)	16
PkrI	GCNGC	6 cut(s)	81, 84, 89, 328, 331, 346
PshBI	ATTAAT	1 cut(s)	350
PsiI	TTATAA	1 cut(s)	264
Psp6I	CCWGG	1 cut(s)	41
PspGI	CCWGG	1 cut(s)	41
RsaI	GTAC	1 cut(s)	444
RsaNI	GTAC	1 cut(s)	443
RseI	CAYNNNNRTG	1 cut(s)	24
SapI	GCTCTTC	2 cut(s)	316, 422
SaqAI	TTAA	2 cut(s)	138, 350
SatI	GCNGC	6 cut(s)	80, 83, 88, 327, 330, 345
ScaI	AGTACT	1 cut(s)	444
ScrFI	CCNGG	1 cut(s)	43
SetI	ASST	4 cut(s)	334, 384, 402, 434
SfaNI	GCATC	1 cut(s)	360
SgrAI	CRCCGGYG	1 cut(s)	407
SmiMI	CAYNNNNRTG	1 cut(s)	24
SmlI	CTYRAG	1 cut(s)	47
SmoI	CTYRAG	1 cut(s)	47
Sse9I	AATT	3 cut(s)	151, 307, 351
SseBI	AGGCCT	1 cut(s)	41
SsiI	CCGC	4 cut(s)	80, 87, 344, 405
SspMI	CTAG	1 cut(s)	451
StuI	AGGCCT	1 cut(s)	41
StyD4I	CCNGG	1 cut(s)	41
StyI	CCWWGG	1 cut(s)	5
TaaI	ACNGT	1 cut(s)	437
TaqI	TCGA	3 cut(s)	24, 36, 251
TasI	AATT	3 cut(s)	151, 307, 351
TatI	WGTACW	1 cut(s)	442
TauI	GCSGC	3 cut(s)	82, 90, 347
TfiI	GAWTC	1 cut(s)	16
Tru1I	TTAA	2 cut(s)	138, 350
Tru9I	TTAA	2 cut(s)	138, 350
TseI	GCWGC	3 cut(s)	82, 326, 329
TspDTI	ATGAA	2 cut(s)	8, 297
TspGWI	ACGGA	2 cut(s)	51, 305
VspI	ATTAAT	1 cut(s)	350
XspI	CTAG	1 cut(s)	451
ZrmI	AGTACT	1 cut(s)	444

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.