Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0010598

Physical Location & Seq

Genomic Coordinates Forward (+)

50653834 .. 50656131

Gene Structure 2298 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG397200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 477 bp

ATGGCTTCGAACCGGGATGACTCCTCACTTGAGGACGTCGCCGTTTTGTCCTCCACCAGGGCTTTTGCGCAGGATGCCTTGCTGCAATTCCAATTGGGGAAGTTCGATCAATGCCTCACGGCCTTGCAGGAGTTCCTCAAGAGGAAGGCCGACAATCCCAAAGTAGTTCTCTCTCTGACTTGTTTATCAGGATTTTCGGGGGATTTTAAATTGAACAACTTTCAAGATGGTGTTCTATCATTTGCGTTTATGGTTGGGCTTCTCGTGGCCTTACCCATCTTTGCATCCTTGGGAAAGAGGCTGGTTGGAGTCGGTGAGGCATCTTTGATAATTCTTGCAGCTCCGTTCATTGATGACCATGCCCCTGCAGATCAGGCATCTAATCTGTTGTATGTTGACCAACCTATTGGTACTAGATTTAGTTATACTTTTGATAGAAGTGATATTTGTCACTCTGAAGATGGTGAGTATACATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MFS_1 OATP

Protein Analysis

158

Amino Acids

17.21

Weight (kDa)

4.53

Isoelectric Point (pI)

35.22

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010598)

Species	Orthologous Gene IDs
malus_domestica	MD02G1023900.v1.1 MD15G1167300.v1.1
rosa_chinensis	RchiOBHm_Chr5g0023731
rosa_laevigata	RLG00000001463 RLG00000029246 RLG00000035752 RLG00000035756
rosa_roxburghii	Rroxscaffold_2G00095550 Rroxscaffold_4G00314150 Rroxscaffold_7G00182450
rosa_rugosa	Rorug04G0119400 Rorug05G0415100
rosa_samantha	Rh1AG155200 Rh1BG031200 Rh2AG030900 Rh2BG395900 Rh2CG467200 Rh5CG182000 Rh5CG371300 Rh7CG297800 Rh7CG397200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	39
Acc16I	TGCGCA	1 cut(s)	69
AccI	GTMKAC	1 cut(s)	470
AcuI	CTGAAG	1 cut(s)	477
AcyI	GRCGYC	1 cut(s)	36
AfaI	GTAC	1 cut(s)	412
AfiI	CCNNNNNNNGG	1 cut(s)	57
AgsI	TTSAA	2 cut(s)	214, 224
AjnI	CCWGG	1 cut(s)	56
AluBI	AGCT	1 cut(s)	341
AluI	AGCT	1 cut(s)	341
AoxI	GGCC	3 cut(s)	120, 147, 267
ApeKI	GCWGC	2 cut(s)	82, 338
AspLEI	GCGC	1 cut(s)	70
AsuC2I	CCSGG	1 cut(s)	14
AsuHPI	GGTGA	2 cut(s)	326, 476
AsuII	TTCGAA	1 cut(s)	8
BauI	CACGAG	1 cut(s)	263
BbvI	GCAGC	2 cut(s)	69, 350
BccI	CCATC	3 cut(s)	221, 284, 455
BceAI	ACGGC	2 cut(s)	26, 135
BciT130I	CCWGG	1 cut(s)	58
BcnI	CCSGG	1 cut(s)	14
BfaI	CTAG	1 cut(s)	414
BfmI	CTRYAG	1 cut(s)	366
BisI	GCNGC	2 cut(s)	83, 339
BlsI	GCNGC	2 cut(s)	84, 340
Bme1390I	CCNGG	2 cut(s)	14, 58
BmrFI	CCNGG	2 cut(s)	14, 58
BmsI	GCATC	4 cut(s)	64, 293, 329, 386
Bpu14I	TTCGAA	1 cut(s)	8
BpuEI	CTTGAG	2 cut(s)	50, 122
BpuMI	CCSGG	1 cut(s)	14
BsaHI	GRCGYC	1 cut(s)	36
BsaJI	CCNNGG	2 cut(s)	57, 288
Bsc4I	CCNNNNNNNGG	1 cut(s)	57
BseBI	CCWGG	1 cut(s)	58
BseDI	CCNNGG	2 cut(s)	57, 288
BseGI	GGATG	3 cut(s)	22, 79, 284
BseLI	CCNNNNNNNGG	1 cut(s)	57
BseRI	GAGGAG	1 cut(s)	13
BseXI	GCAGC	2 cut(s)	69, 350
BshFI	GGCC	3 cut(s)	122, 149, 269
BsiSI	CCGG	1 cut(s)	13
BslI	CCNNNNNNNGG	1 cut(s)	57
BsnI	GGCC	3 cut(s)	122, 149, 269
Bsp119I	TTCGAA	1 cut(s)	8
Bsp143I	GATC	2 cut(s)	106, 370
BspANI	GGCC	3 cut(s)	122, 149, 269
BspMAI	CTGCAG	1 cut(s)	370
BspT104I	TTCGAA	1 cut(s)	8
BssECI	CCNNGG	2 cut(s)	57, 288
BssMI	GATC	2 cut(s)	106, 370
BssNAI	GTATAC	1 cut(s)	471
BssNI	GRCGYC	1 cut(s)	36
BssSI	CACGAG	1 cut(s)	263
BssT1I	CCWWGG	1 cut(s)	288
Bst1107I	GTATAC	1 cut(s)	471
Bst2BI	CACGAG	1 cut(s)	263
Bst2UI	CCWGG	1 cut(s)	58
BstACI	GRCGYC	1 cut(s)	36
BstBI	TTCGAA	1 cut(s)	8
BstENI	CCTNNNNNAGG	1 cut(s)	55
BstF5I	GGATG	3 cut(s)	22, 79, 284
BstHHI	GCGC	1 cut(s)	70
BstKTI	GATC	2 cut(s)	109, 373
BstMBI	GATC	2 cut(s)	106, 370
BstMWI	GCNNNNNNNGC	2 cut(s)	74, 374
BstNI	CCWGG	1 cut(s)	58
BstSCI	CCNGG	2 cut(s)	12, 56
BstSFI	CTRYAG	1 cut(s)	366
BstV1I	GCAGC	2 cut(s)	69, 350
BstXI	CCANNNNNNTGG	1 cut(s)	407
BstZ17I	GTATAC	1 cut(s)	471
BsuRI	GGCC	3 cut(s)	122, 149, 269
BtsCI	GGATG	3 cut(s)	22, 79, 284
CfoI	GCGC	1 cut(s)	70
Csp6I	GTAC	1 cut(s)	411
CviAII	CATG	1 cut(s)	359
CviJI	RGCY	8 cut(s)	5, 62, 122, 149, 259, 269, 301, 341
CviKI_1	RGCY	8 cut(s)	5, 62, 122, 149, 259, 269, 301, 341
CviQI	GTAC	1 cut(s)	411
DpnI	GATC	2 cut(s)	108, 372
DpnII	GATC	2 cut(s)	106, 370
DraI	TTTAAA	1 cut(s)	208
Eco130I	CCWWGG	1 cut(s)	288
Eco57I	CTGAAG	1 cut(s)	477
EcoNI	CCTNNNNNAGG	1 cut(s)	55
EcoRII	CCWGG	1 cut(s)	56
EcoT14I	CCWWGG	1 cut(s)	288
ErhI	CCWWGG	1 cut(s)	288
FaeI	CATG	1 cut(s)	362
FaiI	YATR	6 cut(s)	251, 360, 393, 426, 471, 475
FatI	CATG	1 cut(s)	358
FblI	GTMKAC	1 cut(s)	470
Fnu4HI	GCNGC	2 cut(s)	83, 339
FokI	GGATG	3 cut(s)	29, 86, 271
Fsp4HI	GCNGC	2 cut(s)	83, 339
FspBI	CTAG	1 cut(s)	414
FspI	TGCGCA	1 cut(s)	69
GlaI	GCGC	1 cut(s)	69
GluI	GCNGC	2 cut(s)	83, 339
HaeIII	GGCC	3 cut(s)	122, 149, 269
HapII	CCGG	1 cut(s)	13
HhaI	GCGC	1 cut(s)	70
Hin1I	GRCGYC	1 cut(s)	36
Hin1II	CATG	1 cut(s)	362
Hin6I	GCGC	1 cut(s)	68
HinP1I	GCGC	1 cut(s)	68
HincII	GTYRAC	1 cut(s)	397
HindII	GTYRAC	1 cut(s)	397
HinfI	GANTC	2 cut(s)	20, 309
HpaII	CCGG	1 cut(s)	13
HphI	GGTGA	2 cut(s)	326, 476
Hpy166II	GTNNAC	2 cut(s)	397, 471
Hpy188I	TCNGA	2 cut(s)	177, 457
Hpy188III	TCNNGA	3 cut(s)	139, 189, 224
Hpy8I	GTNNAC	2 cut(s)	397, 471
Hpy99I	CGWCG	1 cut(s)	41
HpyAV	CCTTC	1 cut(s)	139
HpyCH4IV	ACGT	1 cut(s)	36
HpyCH4V	TGCA	5 cut(s)	85, 127, 284, 338, 368
HpyF10VI	GCNNNNNNNGC	2 cut(s)	74, 374
HpySE526I	ACGT	1 cut(s)	36
Hsp92I	GRCGYC	1 cut(s)	36
Hsp92II	CATG	1 cut(s)	362
HspAI	GCGC	1 cut(s)	68
Kzo9I	GATC	2 cut(s)	106, 370
LmnI	GCTCC	1 cut(s)	346
LpnPI	CCDG	9 cut(s)	26, 43, 56, 70, 113, 174, 287, 359, 378
Lsp1109I	GCAGC	2 cut(s)	69, 350
LweI	GCATC	4 cut(s)	64, 293, 329, 386
MaeI	CTAG	1 cut(s)	414
MaeII	ACGT	1 cut(s)	36
MaeIII	GTNAC	1 cut(s)	449
MalI	GATC	2 cut(s)	108, 372
MboI	GATC	2 cut(s)	106, 370
MboII	GAAGA	1 cut(s)	470
MfeI	CAATTG	1 cut(s)	92
MluCI	AATT	4 cut(s)	86, 92, 209, 330
MlyI	GAGTC	2 cut(s)	14, 318
MmeI	TCCRAC	1 cut(s)	286
MnlI	CCTC	8 cut(s)	25, 34, 61, 125, 135, 146, 291, 310
MseI	TTAA	1 cut(s)	207
MspI	CCGG	1 cut(s)	13
MspR9I	CCNGG	2 cut(s)	14, 58
MunI	CAATTG	1 cut(s)	92
MvaI	CCWGG	1 cut(s)	58
MwoI	GCNNNNNNNGC	2 cut(s)	74, 374
NciI	CCSGG	1 cut(s)	14
NdeII	GATC	2 cut(s)	106, 370
NlaIII	CATG	1 cut(s)	362
NmuCI	GTSAC	1 cut(s)	449
NsbI	TGCGCA	1 cut(s)	69
NspV	TTCGAA	1 cut(s)	8
PkrI	GCNGC	2 cut(s)	84, 340
PleI	GAGTC	2 cut(s)	14, 317
PpsI	GAGTC	2 cut(s)	14, 317
Psp6I	CCWGG	1 cut(s)	56
PspGI	CCWGG	1 cut(s)	56
PstI	CTGCAG	1 cut(s)	370
RsaI	GTAC	1 cut(s)	412
RsaNI	GTAC	1 cut(s)	411
SaqAI	TTAA	1 cut(s)	207
SatI	GCNGC	2 cut(s)	83, 339
Sau3AI	GATC	2 cut(s)	106, 370
SchI	GAGTC	2 cut(s)	14, 318
ScrFI	CCNGG	2 cut(s)	14, 58
SetI	ASST	3 cut(s)	39, 343, 406
SfaNI	GCATC	4 cut(s)	64, 293, 329, 386
SfcI	CTRYAG	1 cut(s)	366
SfuI	TTCGAA	1 cut(s)	8
SmlI	CTYRAG	2 cut(s)	29, 137
SmoI	CTYRAG	2 cut(s)	29, 137
Sse9I	AATT	4 cut(s)	86, 92, 209, 330
SspMI	CTAG	1 cut(s)	414
StyD4I	CCNGG	2 cut(s)	12, 56
StyI	CCWWGG	1 cut(s)	288
TaiI	ACGT	1 cut(s)	39
TaqI	TCGA	2 cut(s)	8, 105
TasI	AATT	4 cut(s)	86, 92, 209, 330
Tru1I	TTAA	1 cut(s)	207
Tru9I	TTAA	1 cut(s)	207
TseFI	GTSAC	1 cut(s)	449
TseI	GCWGC	2 cut(s)	82, 338
Tsp45I	GTSAC	1 cut(s)	449
TspDTI	ATGAA	1 cut(s)	337
TspGWI	ACGGA	1 cut(s)	333
XagI	CCTNNNNNAGG	1 cut(s)	55
XmiI	GTMKAC	1 cut(s)	470
XspI	CTAG	1 cut(s)	414
ZraI	GACGTC	1 cut(s)	37

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.