Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0010598

Physical Location & Seq

Genomic Coordinates Reverse (-)

2152589 .. 2152909

Gene Structure 321 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG030900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 321 bp

ATGGCCGCCGCCTCCTCATCAGCGCCTCCACCGAACCGCGACGGCTCCTCCTCATCGCCTGAGGACGACGCCGTTTTGTCCGTCACCAGGGCTTTTGCGCAGGACGCCTTGCTGCAATTCCAGTCAGGGAAGTTCGATCAGTGCCTCACTGCCTTGCACGAGTGCCTCAAGAGGAAGGCCGGCGATCCCAAAGTAAATTCTCTCCCAAATCCAATCTCCGATTTGTTTATCGGGATTTTCGTGTGCTTGAATTCAATTTATGGCTTCCGCTCAAGTGATTGCTTGTTTTTGAGTCAATATTATATCGGAATTTTTAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03018 map03018

Pfam Domains

Protein Families

TPR_8

Protein Analysis

106

Amino Acids

11.47

Weight (kDa)

5.62

Isoelectric Point (pI)

59.23

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010598)

Species	Orthologous Gene IDs
malus_domestica	MD02G1023900.v1.1 MD15G1167300.v1.1
rosa_chinensis	RchiOBHm_Chr5g0023731
rosa_laevigata	RLG00000001463 RLG00000029246 RLG00000035752 RLG00000035756
rosa_roxburghii	Rroxscaffold_2G00095550 Rroxscaffold_4G00314150 Rroxscaffold_7G00182450
rosa_rugosa	Rorug04G0119400 Rorug05G0415100
rosa_samantha	Rh1AG155200 Rh1BG031200 Rh2AG030900 Rh2BG395900 Rh2CG467200 Rh5CG182000 Rh5CG371300 Rh7CG297800 Rh7CG397200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	99
AccBSI	CCGCTC	1 cut(s)	270
AccII	CGCG	1 cut(s)	39
AciI	CCGC	4 cut(s)	6, 9, 37, 268
AclWI	GGATC	1 cut(s)	179
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	3 cut(s)	196, 250, 309
AcyI	GRCGYC	2 cut(s)	69, 105
AfiI	CCNNNNNNNGG	1 cut(s)	87
AgsI	TTSAA	2 cut(s)	250, 255
AjnI	CCWGG	1 cut(s)	86
AlwI	GGATC	1 cut(s)	179
AoxI	GGCC	2 cut(s)	3, 177
ApeKI	GCWGC	1 cut(s)	112
ApoI	RAATTY	3 cut(s)	196, 250, 309
AspLEI	GCGC	2 cut(s)	25, 100
AsuHPI	GGTGA	1 cut(s)	76
AxyI	CCTNAGG	1 cut(s)	60
BauI	CACGAG	1 cut(s)	158
BbvI	GCAGC	1 cut(s)	99
BceAI	ACGGC	2 cut(s)	56, 58
BciT130I	CCWGG	1 cut(s)	88
BfoI	RGCGCY	1 cut(s)	26
BisI	GCNGC	3 cut(s)	6, 9, 113
BlsI	GCNGC	3 cut(s)	7, 10, 114
Bme1390I	CCNGG	1 cut(s)	88
BmiI	GGNNCC	1 cut(s)	46
BmrFI	CCNGG	1 cut(s)	88
BpuEI	CTTGAG	2 cut(s)	152, 256
BsaHI	GRCGYC	2 cut(s)	69, 105
BsaJI	CCNNGG	1 cut(s)	87
BsaXI	ACNNNNNCTCC	2 cut(s)	32, 62
Bsc4I	CCNNNNNNNGG	1 cut(s)	87
Bse118I	RCCGGY	1 cut(s)	179
Bse1I	ACTGG	1 cut(s)	121
Bse21I	CCTNAGG	1 cut(s)	60
BseBI	CCWGG	1 cut(s)	88
BseDI	CCNNGG	1 cut(s)	87
BseLI	CCNNNNNNNGG	1 cut(s)	87
BseMII	CTCAG	1 cut(s)	51
BseNI	ACTGG	1 cut(s)	121
BseRI	GAGGAG	3 cut(s)	4, 37, 40
BseXI	GCAGC	1 cut(s)	99
Bsh1236I	CGCG	1 cut(s)	39
BshFI	GGCC	2 cut(s)	5, 179
BsiSI	CCGG	1 cut(s)	180
BslI	CCNNNNNNNGG	1 cut(s)	87
BsnI	GGCC	2 cut(s)	5, 179
Bsp143I	GATC	2 cut(s)	136, 184
BspACI	CCGC	4 cut(s)	6, 9, 37, 268
BspANI	GGCC	2 cut(s)	5, 179
BspCNI	CTCAG	1 cut(s)	52
BspFNI	CGCG	1 cut(s)	39
BspLI	GGNNCC	1 cut(s)	46
BspPI	GGATC	1 cut(s)	179
BsrBI	CCGCTC	1 cut(s)	270
BsrFI	RCCGGY	1 cut(s)	179
BsrI	ACTGG	1 cut(s)	121
BssAI	RCCGGY	1 cut(s)	179
BssECI	CCNNGG	1 cut(s)	87
BssMI	GATC	2 cut(s)	136, 184
BssNI	GRCGYC	2 cut(s)	69, 105
BssSI	CACGAG	1 cut(s)	158
Bst2BI	CACGAG	1 cut(s)	158
Bst2UI	CCWGG	1 cut(s)	88
BstACI	GRCGYC	2 cut(s)	69, 105
BstC8I	GCNNGC	1 cut(s)	181
BstDEI	CTNAG	1 cut(s)	60
BstFNI	CGCG	1 cut(s)	39
BstH2I	RGCGCY	1 cut(s)	26
BstHHI	GCGC	2 cut(s)	25, 100
BstKTI	GATC	2 cut(s)	139, 187
BstMBI	GATC	2 cut(s)	136, 184
BstMWI	GCNNNNNNNGC	1 cut(s)	104
BstNI	CCWGG	1 cut(s)	88
BstSCI	CCNGG	1 cut(s)	86
BstUI	CGCG	1 cut(s)	39
BstV1I	GCAGC	1 cut(s)	99
Bsu36I	CCTNAGG	1 cut(s)	60
BsuRI	GGCC	2 cut(s)	5, 179
BtgZI	GCGATG	1 cut(s)	39
BtsI	GCAGTG	1 cut(s)	147
BtsIMutI	CAGTG	2 cut(s)	146, 147
Cac8I	GCNNGC	1 cut(s)	181
CfoI	GCGC	2 cut(s)	25, 100
Cfr10I	RCCGGY	1 cut(s)	179
CseI	GACGC	2 cut(s)	77, 113
CviJI	RGCY	5 cut(s)	5, 45, 92, 179, 264
CviKI_1	RGCY	5 cut(s)	5, 45, 92, 179, 264
DdeI	CTNAG	1 cut(s)	60
DpnI	GATC	2 cut(s)	138, 186
DpnII	GATC	2 cut(s)	136, 184
EaeI	YGGCCR	1 cut(s)	3
Eco81I	CCTNAGG	1 cut(s)	60
EcoRI	GAATTC	1 cut(s)	250
EcoRII	CCWGG	1 cut(s)	86
FaiI	YATR	2 cut(s)	261, 303
Fnu4HI	GCNGC	3 cut(s)	6, 9, 113
Fsp4HI	GCNGC	3 cut(s)	6, 9, 113
FspI	TGCGCA	1 cut(s)	99
GlaI	GCGC	2 cut(s)	24, 99
GluI	GCNGC	3 cut(s)	6, 9, 113
HaeII	RGCGCY	1 cut(s)	26
HaeIII	GGCC	2 cut(s)	5, 179
HapII	CCGG	1 cut(s)	180
HgaI	GACGC	2 cut(s)	77, 113
HhaI	GCGC	2 cut(s)	25, 100
Hin1I	GRCGYC	2 cut(s)	69, 105
Hin6I	GCGC	2 cut(s)	23, 98
HinP1I	GCGC	2 cut(s)	23, 98
HinfI	GANTC	1 cut(s)	292
HpaII	CCGG	1 cut(s)	180
HphI	GGTGA	1 cut(s)	76
Hpy188I	TCNGA	2 cut(s)	220, 308
Hpy188III	TCNNGA	2 cut(s)	169, 232
Hpy99I	CGWCG	2 cut(s)	44, 71
HpyAV	CCTTC	1 cut(s)	169
HpyCH4V	TGCA	2 cut(s)	115, 157
HpyF10VI	GCNNNNNNNGC	1 cut(s)	104
HpyF3I	CTNAG	1 cut(s)	60
Hsp92I	GRCGYC	2 cut(s)	69, 105
HspAI	GCGC	2 cut(s)	23, 98
KroI	GCCGGC	1 cut(s)	179
KroNI	GCCGGC	1 cut(s)	181
Kzo9I	GATC	2 cut(s)	136, 184
LmnI	GCTCC	1 cut(s)	50
LpnPI	CCDG	7 cut(s)	72, 73, 86, 100, 111, 134, 193
Lsp1109I	GCAGC	1 cut(s)	99
MaeIII	GTNAC	1 cut(s)	82
MalI	GATC	2 cut(s)	138, 186
MbiI	CCGCTC	1 cut(s)	270
MboI	GATC	2 cut(s)	136, 184
MluCI	AATT	5 cut(s)	116, 196, 250, 255, 309
MlyI	GAGTC	1 cut(s)	301
MnlI	CCTC	9 cut(s)	22, 25, 36, 55, 58, 61, 155, 165, 176
MroNI	GCCGGC	1 cut(s)	179
MseI	TTAA	1 cut(s)	315
MspI	CCGG	1 cut(s)	180
MspR9I	CCNGG	1 cut(s)	88
MvaI	CCWGG	1 cut(s)	88
MvnI	CGCG	1 cut(s)	39
MwoI	GCNNNNNNNGC	1 cut(s)	104
NaeI	GCCGGC	1 cut(s)	181
NdeII	GATC	2 cut(s)	136, 184
NgoMIV	GCCGGC	1 cut(s)	179
NlaIV	GGNNCC	1 cut(s)	46
NmuCI	GTSAC	1 cut(s)	82
NsbI	TGCGCA	1 cut(s)	99
PcsI	WCGNNNNNNNCGW	1 cut(s)	237
PdiI	GCCGGC	1 cut(s)	181
PkrI	GCNGC	3 cut(s)	7, 10, 114
PleI	GAGTC	1 cut(s)	300
PpsI	GAGTC	1 cut(s)	300
Psp6I	CCWGG	1 cut(s)	86
PspGI	CCWGG	1 cut(s)	86
PspN4I	GGNNCC	1 cut(s)	46
SaqAI	TTAA	1 cut(s)	315
SatI	GCNGC	3 cut(s)	6, 9, 113
Sau3AI	GATC	2 cut(s)	136, 184
SchI	GAGTC	1 cut(s)	301
ScrFI	CCNGG	1 cut(s)	88
SmlI	CTYRAG	2 cut(s)	167, 271
SmoI	CTYRAG	2 cut(s)	167, 271
Sse9I	AATT	5 cut(s)	116, 196, 250, 255, 309
SsiI	CCGC	4 cut(s)	6, 9, 37, 268
SspI	AATATT	1 cut(s)	299
StyD4I	CCNGG	1 cut(s)	86
TaqI	TCGA	1 cut(s)	135
TasI	AATT	5 cut(s)	116, 196, 250, 255, 309
TauI	GCSGC	2 cut(s)	8, 11
Tru1I	TTAA	1 cut(s)	315
Tru9I	TTAA	1 cut(s)	315
TscAI	CASTG	2 cut(s)	146, 154
TseFI	GTSAC	1 cut(s)	82
TseI	GCWGC	1 cut(s)	112
Tsp45I	GTSAC	1 cut(s)	82
TspGWI	ACGGA	1 cut(s)	70
TspRI	CASTG	2 cut(s)	146, 154
XapI	RAATTY	3 cut(s)	196, 250, 309

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.