CCR4-NOT transcription complex subunit
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| Species | Orthologous Gene IDs |
|---|---|
| malus_domestica | MD02G1023900.v1.1 MD15G1167300.v1.1 |
| rosa_chinensis | RchiOBHm_Chr5g0023731 |
| rosa_laevigata | RLG00000001463 RLG00000029246 RLG00000035752 RLG00000035756 |
| rosa_roxburghii | Rroxscaffold_2G00095550 Rroxscaffold_4G00314150 Rroxscaffold_7G00182450 |
| rosa_rugosa | Rorug04G0119400 Rorug05G0415100 |
| rosa_samantha | Rh1AG155200 Rh1BG031200 Rh2AG030900 Rh2BG395900 Rh2CG467200 Rh5CG182000 Rh5CG371300 Rh7CG297800 Rh7CG397200 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc16I | TGCGCA | 1 cut(s) | 93 |
| AclWI | GGATC | 1 cut(s) | 173 |
| AcyI | GRCGYC | 2 cut(s) | 63, 99 |
| AgsI | TTSAA | 1 cut(s) | 163 |
| AjnI | CCWGG | 1 cut(s) | 80 |
| AlwI | GGATC | 1 cut(s) | 173 |
| AoxI | GGCC | 1 cut(s) | 171 |
| ApeKI | GCWGC | 1 cut(s) | 106 |
| AspLEI | GCGC | 1 cut(s) | 94 |
| BbvI | GCAGC | 1 cut(s) | 93 |
| BccI | CCATC | 1 cut(s) | 35 |
| BceAI | ACGGC | 2 cut(s) | 42, 50 |
| BciT130I | CCWGG | 1 cut(s) | 82 |
| BisI | GCNGC | 1 cut(s) | 107 |
| BlsI | GCNGC | 1 cut(s) | 108 |
| Bme1390I | CCNGG | 1 cut(s) | 82 |
| BmiI | GGNNCC | 1 cut(s) | 46 |
| BmrFI | CCNGG | 1 cut(s) | 82 |
| BpuEI | CTTGAG | 1 cut(s) | 74 |
| BsaHI | GRCGYC | 2 cut(s) | 63, 99 |
| BsaJI | CCNNGG | 1 cut(s) | 81 |
| Bse118I | RCCGGY | 1 cut(s) | 173 |
| Bse1I | ACTGG | 1 cut(s) | 115 |
| BseBI | CCWGG | 1 cut(s) | 82 |
| BseDI | CCNNGG | 1 cut(s) | 81 |
| BseNI | ACTGG | 1 cut(s) | 115 |
| BseRI | GAGGAG | 1 cut(s) | 37 |
| BseXI | GCAGC | 1 cut(s) | 93 |
| BshFI | GGCC | 1 cut(s) | 173 |
| BsiSI | CCGG | 1 cut(s) | 174 |
| BsnI | GGCC | 1 cut(s) | 173 |
| Bsp143I | GATC | 2 cut(s) | 130, 178 |
| BspANI | GGCC | 1 cut(s) | 173 |
| BspLI | GGNNCC | 1 cut(s) | 46 |
| BspPI | GGATC | 1 cut(s) | 173 |
| BsrFI | RCCGGY | 1 cut(s) | 173 |
| BsrI | ACTGG | 1 cut(s) | 115 |
| BssAI | RCCGGY | 1 cut(s) | 173 |
| BssECI | CCNNGG | 1 cut(s) | 81 |
| BssMI | GATC | 2 cut(s) | 130, 178 |
| BssNI | GRCGYC | 2 cut(s) | 63, 99 |
| Bst2UI | CCWGG | 1 cut(s) | 82 |
| BstACI | GRCGYC | 2 cut(s) | 63, 99 |
| BstC8I | GCNNGC | 1 cut(s) | 175 |
| BstHHI | GCGC | 1 cut(s) | 94 |
| BstKTI | GATC | 2 cut(s) | 133, 181 |
| BstMBI | GATC | 2 cut(s) | 130, 178 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 98 |
| BstNI | CCWGG | 1 cut(s) | 82 |
| BstSCI | CCNGG | 1 cut(s) | 80 |
| BstV1I | GCAGC | 1 cut(s) | 93 |
| BsuRI | GGCC | 1 cut(s) | 173 |
| BtsIMutI | CAGTG | 1 cut(s) | 140 |
| Cac8I | GCNNGC | 1 cut(s) | 175 |
| CfoI | GCGC | 1 cut(s) | 94 |
| Cfr10I | RCCGGY | 1 cut(s) | 173 |
| CseI | GACGC | 2 cut(s) | 71, 107 |
| CviJI | RGCY | 5 cut(s) | 29, 45, 86, 146, 173 |
| CviKI_1 | RGCY | 5 cut(s) | 29, 45, 86, 146, 173 |
| DpnI | GATC | 2 cut(s) | 132, 180 |
| DpnII | GATC | 2 cut(s) | 130, 178 |
| EcoRII | CCWGG | 1 cut(s) | 80 |
| FaiI | YATR | 1 cut(s) | 192 |
| Fnu4HI | GCNGC | 1 cut(s) | 107 |
| Fsp4HI | GCNGC | 1 cut(s) | 107 |
| FspI | TGCGCA | 1 cut(s) | 93 |
| GlaI | GCGC | 1 cut(s) | 93 |
| GluI | GCNGC | 1 cut(s) | 107 |
| HaeIII | GGCC | 1 cut(s) | 173 |
| HapII | CCGG | 1 cut(s) | 174 |
| HgaI | GACGC | 2 cut(s) | 71, 107 |
| HhaI | GCGC | 1 cut(s) | 94 |
| Hin1I | GRCGYC | 2 cut(s) | 63, 99 |
| Hin6I | GCGC | 1 cut(s) | 92 |
| HinP1I | GCGC | 1 cut(s) | 92 |
| HpaII | CCGG | 1 cut(s) | 174 |
| Hpy188III | TCNNGA | 1 cut(s) | 163 |
| Hpy99I | CGWCG | 1 cut(s) | 65 |
| HpyAV | CCTTC | 1 cut(s) | 163 |
| HpyCH4V | TGCA | 2 cut(s) | 109, 151 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 98 |
| Hsp92I | GRCGYC | 2 cut(s) | 63, 99 |
| HspAI | GCGC | 1 cut(s) | 92 |
| KroI | GCCGGC | 1 cut(s) | 173 |
| KroNI | GCCGGC | 1 cut(s) | 175 |
| Kzo9I | GATC | 2 cut(s) | 130, 178 |
| LmnI | GCTCC | 1 cut(s) | 50 |
| LpnPI | CCDG | 6 cut(s) | 67, 80, 94, 128, 137, 187 |
| Lsp1109I | GCAGC | 1 cut(s) | 93 |
| MalI | GATC | 2 cut(s) | 132, 180 |
| MboI | GATC | 2 cut(s) | 130, 178 |
| MluCI | AATT | 1 cut(s) | 110 |
| MnlI | CCTC | 6 cut(s) | 16, 28, 49, 58, 149, 159 |
| MroNI | GCCGGC | 1 cut(s) | 173 |
| MspI | CCGG | 1 cut(s) | 174 |
| MspR9I | CCNGG | 1 cut(s) | 82 |
| MvaI | CCWGG | 1 cut(s) | 82 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 98 |
| NaeI | GCCGGC | 1 cut(s) | 175 |
| NdeII | GATC | 2 cut(s) | 130, 178 |
| NgoMIV | GCCGGC | 1 cut(s) | 173 |
| NlaIV | GGNNCC | 1 cut(s) | 46 |
| NsbI | TGCGCA | 1 cut(s) | 93 |
| PdiI | GCCGGC | 1 cut(s) | 175 |
| PkrI | GCNGC | 1 cut(s) | 108 |
| Psp6I | CCWGG | 1 cut(s) | 80 |
| PspGI | CCWGG | 1 cut(s) | 80 |
| PspN4I | GGNNCC | 1 cut(s) | 46 |
| SatI | GCNGC | 1 cut(s) | 107 |
| Sau3AI | GATC | 2 cut(s) | 130, 178 |
| ScrFI | CCNGG | 1 cut(s) | 82 |
| SetI | ASST | 2 cut(s) | 8, 39 |
| SmlI | CTYRAG | 1 cut(s) | 53 |
| SmoI | CTYRAG | 1 cut(s) | 53 |
| Sse9I | AATT | 1 cut(s) | 110 |
| StyD4I | CCNGG | 1 cut(s) | 80 |
| TaqI | TCGA | 1 cut(s) | 129 |
| TasI | AATT | 1 cut(s) | 110 |
| TscAI | CASTG | 1 cut(s) | 140 |
| TseI | GCWGC | 1 cut(s) | 106 |
| TspRI | CASTG | 1 cut(s) | 140 |