Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0010598

Physical Location & Seq

Genomic Coordinates Forward (+)

21512642 .. 21523815

Gene Structure 11174 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00182450.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 615 bp

ATGAGTGGTTTTTATGATGTTGAGCTTAAAGTCCGAGAATATGAGCTTGATCGGTATGGCGTGGTTAACAATGCTGTCTATGTAGATTATTGCCAGCACGCTTTTGATGAACATTTAGAAAGCGTCGGCCTGAGTGCTGGTGCAATTGCCCAAACCGGTGAAGTAATGGCTTTGTCAGCATCGTCTCTGAAATTCATTGCACCTCTAAAGCCTATCTTCGAAGGAACGGCCACAATTGTGTGGCTTAATAAAGACTATCGCCCTGTCCGTATTCCATCGGAGTCATCACTCATTCACTCTTGGTTTGCTTCTTCGATTCCTCCTCAAGTCGTCAAGCCACTCCTCAAGCAGACAAACATTGGACCTGATTCCAATGGCTCACAGTTCTTTATCACCACAATCAAGGCTAGTTCGTATGCTATTCTTCATAGTACTCACATTAAGTTGATTACACATGATTTCTTGTATTTATTGGCTGTATTTGGCTTAAGATGGCTTGCTTCTTACAGGGGGGATTTTAAATTGAACAATTTTCAAGATGGTGTTCTATCATCTGCATTTATGGTTGGGCTTCTCGTGGCCTCACCCATCTTTGAATCCTTGGGAAAGAGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004312 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009536 GO:0016295 GO:0016296 GO:0016297 GO:0016740 GO:0016746 GO:0016747 GO:0016787 GO:0016788 GO:0016790 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0047381

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

4HBT 4HBT_2

Protein Analysis

204

Amino Acids

22.67

Weight (kDa)

6.58

Isoelectric Point (pI)

32.69

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
4HBT_2	PF13279	11 - 71	8.6e-08	Thioesterase-like superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0010598)

Species	Orthologous Gene IDs
malus_domestica	MD02G1023900.v1.1 MD15G1167300.v1.1
rosa_chinensis	RchiOBHm_Chr5g0023731
rosa_laevigata	RLG00000001463 RLG00000029246 RLG00000035752 RLG00000035756
rosa_roxburghii	Rroxscaffold_2G00095550 Rroxscaffold_4G00314150 Rroxscaffold_7G00182450
rosa_rugosa	Rorug04G0119400 Rorug05G0415100
rosa_samantha	Rh1AG155200 Rh1BG031200 Rh2AG030900 Rh2BG395900 Rh2CG467200 Rh5CG182000 Rh5CG371300 Rh7CG297800 Rh7CG397200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcoI	YGGCCR	1 cut(s)	228
AcsI	RAATTY	1 cut(s)	191
AfaI	GTAC	1 cut(s)	433
AflII	CTTAAG	1 cut(s)	487
AgeI	ACCGGT	1 cut(s)	155
AgsI	TTSAA	3 cut(s)	526, 536, 596
AleI	CACNNNNGTG	1 cut(s)	236
AluBI	AGCT	2 cut(s)	25, 46
AluI	AGCT	2 cut(s)	25, 46
Alw26I	GTCTC	1 cut(s)	189
AoxI	GGCC	3 cut(s)	127, 228, 579
ApoI	RAATTY	1 cut(s)	191
AsiGI	ACCGGT	1 cut(s)	155
AspS9I	GGNCC	1 cut(s)	362
AsuHPI	GGTGA	3 cut(s)	170, 385, 576
AsuII	TTCGAA	1 cut(s)	219
AvaII	GGWCC	1 cut(s)	362
BauI	CACGAG	1 cut(s)	575
BccI	CCATC	4 cut(s)	283, 486, 533, 596
BceAI	ACGGC	1 cut(s)	243
BcoDI	GTCTC	1 cut(s)	189
BfaI	CTAG	1 cut(s)	408
BfrI	CTTAAG	1 cut(s)	487
BmcAI	AGTACT	1 cut(s)	433
Bme18I	GGWCC	1 cut(s)	362
BmgT120I	GGNCC	1 cut(s)	362
BmsI	GCATC	1 cut(s)	188
Bpu14I	TTCGAA	1 cut(s)	219
BpuEI	CTTGAG	2 cut(s)	309, 329
BsaJI	CCNNGG	1 cut(s)	600
BsaWI	WCCGGW	1 cut(s)	155
Bse118I	RCCGGY	1 cut(s)	155
Bse3DI	GCAATG	1 cut(s)	195
BseDI	CCNNGG	1 cut(s)	600
BseMI	GCAATG	1 cut(s)	195
BseMII	CTCAG	1 cut(s)	122
BseRI	GAGGAG	2 cut(s)	312, 332
BshFI	GGCC	3 cut(s)	129, 230, 581
BshTI	ACCGGT	1 cut(s)	155
BsiSI	CCGG	1 cut(s)	156
BsmAI	GTCTC	1 cut(s)	189
BsmBI	CGTCTC	1 cut(s)	189
BsnI	GGCC	3 cut(s)	129, 230, 581
Bsp119I	TTCGAA	1 cut(s)	219
Bsp143I	GATC	1 cut(s)	49
BspANI	GGCC	3 cut(s)	129, 230, 581
BspCNI	CTCAG	1 cut(s)	123
BspT104I	TTCGAA	1 cut(s)	219
BspTI	CTTAAG	1 cut(s)	487
BsrDI	GCAATG	1 cut(s)	195
BsrFI	RCCGGY	1 cut(s)	155
BssAI	RCCGGY	1 cut(s)	155
BssECI	CCNNGG	1 cut(s)	600
BssMI	GATC	1 cut(s)	49
BssSI	CACGAG	1 cut(s)	575
BssT1I	CCWWGG	1 cut(s)	600
Bst2BI	CACGAG	1 cut(s)	575
Bst4CI	ACNGT	1 cut(s)	384
BstAFI	CTTAAG	1 cut(s)	487
BstBI	TTCGAA	1 cut(s)	219
BstC8I	GCNNGC	3 cut(s)	95, 99, 498
BstDEI	CTNAG	1 cut(s)	131
BstKTI	GATC	1 cut(s)	52
BstMAI	GTCTC	1 cut(s)	189
BstMBI	GATC	1 cut(s)	49
BstMWI	GCNNNNNNNGC	1 cut(s)	176
BsuRI	GGCC	3 cut(s)	129, 230, 581
Cac8I	GCNNGC	3 cut(s)	95, 99, 498
Cfr10I	RCCGGY	1 cut(s)	155
Cfr13I	GGNCC	1 cut(s)	362
CseI	GACGC	1 cut(s)	112
Csp6I	GTAC	1 cut(s)	432
CspAI	ACCGGT	1 cut(s)	155
CviAII	CATG	1 cut(s)	455
CviQI	GTAC	1 cut(s)	432
DdeI	CTNAG	1 cut(s)	131
DpnI	GATC	1 cut(s)	51
DpnII	GATC	1 cut(s)	49
DraI	TTTAAA	1 cut(s)	520
EaeI	YGGCCR	1 cut(s)	228
Eco130I	CCWWGG	1 cut(s)	600
Eco47I	GGWCC	1 cut(s)	362
EcoT14I	CCWWGG	1 cut(s)	600
ErhI	CCWWGG	1 cut(s)	600
Esp3I	CGTCTC	1 cut(s)	189
FaeI	CATG	1 cut(s)	458
FaiI	YATR	8 cut(s)	15, 42, 57, 81, 417, 429, 456, 563
FalI	AAGNNNNNCTT	2 cut(s)	200, 232
FatI	CATG	1 cut(s)	454
FspBI	CTAG	1 cut(s)	408
HaeIII	GGCC	3 cut(s)	129, 230, 581
HapII	CCGG	1 cut(s)	156
HgaI	GACGC	1 cut(s)	112
Hin1II	CATG	1 cut(s)	458
HincII	GTYRAC	1 cut(s)	67
HindII	GTYRAC	1 cut(s)	67
HinfI	GANTC	4 cut(s)	281, 316, 368, 596
HpaI	GTTAAC	1 cut(s)	67
HpaII	CCGG	1 cut(s)	156
HphI	GGTGA	3 cut(s)	170, 385, 576
Hpy166II	GTNNAC	1 cut(s)	67
Hpy188I	TCNGA	3 cut(s)	35, 189, 280
Hpy188III	TCNNGA	1 cut(s)	536
Hpy8I	GTNNAC	1 cut(s)	67
Hpy99I	CGWCG	1 cut(s)	128
HpyAV	CCTTC	1 cut(s)	215
HpyCH4III	ACNGT	1 cut(s)	384
HpyCH4V	TGCA	3 cut(s)	143, 200, 557
HpyF10VI	GCNNNNNNNGC	1 cut(s)	176
HpyF3I	CTNAG	1 cut(s)	131
Hsp92II	CATG	1 cut(s)	458
KspAI	GTTAAC	1 cut(s)	67
Kzo9I	GATC	1 cut(s)	49
LpnPI	CCDG	7 cut(s)	107, 123, 143, 169, 276, 378, 493
LweI	GCATC	1 cut(s)	188
MaeI	CTAG	1 cut(s)	408
MalI	GATC	1 cut(s)	51
MboI	GATC	1 cut(s)	49
MboII	GAAGA	3 cut(s)	208, 303, 416
MfeI	CAATTG	2 cut(s)	144, 234
MluCI	AATT	5 cut(s)	144, 191, 234, 521, 529
MlyI	GAGTC	1 cut(s)	290
MnlI	CCTC	6 cut(s)	213, 330, 333, 353, 592, 603
MseI	TTAA	6 cut(s)	27, 66, 246, 441, 488, 519
MslI	CAYNNNNRTG	1 cut(s)	236
MspCI	CTTAAG	1 cut(s)	487
MspI	CCGG	1 cut(s)	156
MunI	CAATTG	2 cut(s)	144, 234
MwoI	GCNNNNNNNGC	1 cut(s)	176
NdeII	GATC	1 cut(s)	49
NlaIII	CATG	1 cut(s)	458
NspV	TTCGAA	1 cut(s)	219
OliI	CACNNNNGTG	1 cut(s)	236
PcsI	WCGNNNNNNNCGW	1 cut(s)	265
PfeI	GAWTC	3 cut(s)	316, 368, 596
PinAI	ACCGGT	1 cut(s)	155
PleI	GAGTC	1 cut(s)	289
PpsI	GAGTC	1 cut(s)	289
PspPI	GGNCC	1 cut(s)	362
RsaI	GTAC	1 cut(s)	433
RsaNI	GTAC	1 cut(s)	432
RseI	CAYNNNNRTG	1 cut(s)	236
SaqAI	TTAA	6 cut(s)	27, 66, 246, 441, 488, 519
Sau3AI	GATC	1 cut(s)	49
Sau96I	GGNCC	1 cut(s)	362
ScaI	AGTACT	1 cut(s)	433
SchI	GAGTC	1 cut(s)	290
SetI	ASST	5 cut(s)	27, 48, 205, 367, 614
SfaNI	GCATC	1 cut(s)	188
SfuI	TTCGAA	1 cut(s)	219
SinI	GGWCC	1 cut(s)	362
SmiMI	CAYNNNNRTG	1 cut(s)	236
SmlI	CTYRAG	3 cut(s)	324, 344, 487
SmoI	CTYRAG	3 cut(s)	324, 344, 487
Sse9I	AATT	5 cut(s)	144, 191, 234, 521, 529
SspMI	CTAG	1 cut(s)	408
StyI	CCWWGG	1 cut(s)	600
TaaI	ACNGT	1 cut(s)	384
TaqI	TCGA	2 cut(s)	219, 314
TasI	AATT	5 cut(s)	144, 191, 234, 521, 529
TatI	WGTACW	1 cut(s)	431
TfiI	GAWTC	3 cut(s)	316, 368, 596
Tru1I	TTAA	6 cut(s)	27, 66, 246, 441, 488, 519
Tru9I	TTAA	6 cut(s)	27, 66, 246, 441, 488, 519
TspDTI	ATGAA	3 cut(s)	123, 184, 416
TspGWI	ACGGA	1 cut(s)	257
Vha464I	CTTAAG	1 cut(s)	487
VpaK11BI	GGWCC	1 cut(s)	362
XapI	RAATTY	1 cut(s)	191
XspI	CTAG	1 cut(s)	408
ZrmI	AGTACT	1 cut(s)	433

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.