Rorug04G0119400

sphingolipid transporter spinster homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0010598
Physical Location & Seq
Forward (+)
18944821 .. 18945676
856 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0119400.1

Sequence Viewer

Length: 528 bp
ATGGACAAGTTACAGATGAAGCTGGCTAGGTTTCTGCGCAGCCCTGTGGGTATTCCCGAAGATAAGCACCCGTTTATTATTGTACATATATTGGATATGATTGAATTAGCCGAGCCAGATAAAATTATCGATGTGCACTTGATGGACATTATTCTTAGAGCTACGGGGGAATTCGCGCACTTAAACGTGGAAGACAATTACTACAGGCTCATGCTTATTCCGGCATCCGAAGCATTCATTCAAGGTTTGCAGCAAGTGAGACTCGTTGAGCATGACAGTTTGGAAATGCTTGGTCTGGAGACATCGTGTGCTGTTTGTATGGATGCCTTTGCGGACACAAAAGAGATCACCATCGCTCGCTTGCCCTGCTTACATTATTATCATCATCATTGCATTGTCGAGTGGCTCAGGATCAATCACGTCTGCCCCATTTGCCGGCACCCTAATGCCCCGATTAGACGCCCGGGGTCATCAAGGGCCAGAAGAATCAGTATGTTATTGAGTGACACAGAAATTTGCCTTGCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
MFS_1 OATP

Protein Analysis

175

Amino Acids

20.13

Weight (kDa)

6.1

Isoelectric Point (pI)

56.26

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-RING_2 PF13639 102 - 146 2.4e-12 Ring finger domain
zf-C3HC4_2 PF13923 103 - 145 5.5e-08 Zinc finger, C3HC4 type (RING finger)
zf-C3HC4 PF00097 103 - 145 1.9e-06 Zinc finger, C3HC4 type (RING finger)
zf-RING_11 PF17123 103 - 132 3.7e-06 RING-like zinc finger
zf-rbx1 PF12678 105 - 146 6e-09 RING-H2 zinc finger domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 38
AccB1I GGYRCC 1 cut(s) 438
AccII CGCG 1 cut(s) 176
AciI CCGC 1 cut(s) 332
AclWI GGATC 1 cut(s) 419
AcsI RAATTY 2 cut(s) 170, 513
AcyI GRCGYC 1 cut(s) 460
AfaI GTAC 1 cut(s) 84
AfiI CCNNNNNNNGG 1 cut(s) 435
AgsI TTSAA 2 cut(s) 104, 242
AjiI CACGTC 1 cut(s) 421
AluBI AGCT 2 cut(s) 22, 161
AluI AGCT 2 cut(s) 22, 161
Alw21I GWGCWC 1 cut(s) 138
Alw26I GTCTC 2 cut(s) 253, 293
Alw44I GTGCAC 1 cut(s) 134
AlwI GGATC 1 cut(s) 419
Ama87I CYCGRG 1 cut(s) 463
AoxI GGCC 1 cut(s) 477
ApaLI GTGCAC 1 cut(s) 134
ApeKI GCWGC 2 cut(s) 39, 250
ApoI RAATTY 2 cut(s) 170, 513
AspLEI GCGC 2 cut(s) 39, 178
AspS9I GGNCC 1 cut(s) 477
AsuC2I CCSGG 2 cut(s) 464, 465
AsuHPI GGTGA 1 cut(s) 340
AvaI CYCGRG 1 cut(s) 463
BaeGI GKGCMC 1 cut(s) 138
BanI GGYRCC 1 cut(s) 438
BbsI GAAGAC 1 cut(s) 198
Bbv12I GWGCWC 1 cut(s) 138
BbvI GCAGC 2 cut(s) 51, 262
BccI CCATC 2 cut(s) 136, 359
BcnI CCSGG 2 cut(s) 464, 465
BcoDI GTCTC 2 cut(s) 253, 293
BfaI CTAG 1 cut(s) 27
BfmI CTRYAG 1 cut(s) 202
BisI GCNGC 2 cut(s) 40, 251
BlsI GCNGC 2 cut(s) 41, 252
Bme1390I CCNGG 2 cut(s) 464, 465
BmeT110I CYCGRG 1 cut(s) 463
BmgBI CACGTC 1 cut(s) 421
BmgT120I GGNCC 1 cut(s) 477
BmiI GGNNCC 1 cut(s) 440
BmrFI CCNGG 2 cut(s) 464, 465
BmsI GCATC 2 cut(s) 233, 313
BpiI GAAGAC 1 cut(s) 198
BpmI CTGGAG 1 cut(s) 317
Bpu10I CCTNAGC 1 cut(s) 407
BpuMI CCSGG 2 cut(s) 464, 465
Bsa29I ATCGAT 1 cut(s) 129
BsaBI GATNNNNATC 1 cut(s) 350
BsaHI GRCGYC 1 cut(s) 460
BsaJI CCNNGG 2 cut(s) 463, 464
BsaXI ACNNNNNCTCC 2 cut(s) 290, 320
Bsc4I CCNNNNNNNGG 1 cut(s) 435
Bse118I RCCGGY 1 cut(s) 435
Bse3DI GCAATG 1 cut(s) 388
Bse8I GATNNNNATC 1 cut(s) 350
BseCI ATCGAT 1 cut(s) 129
BseDI CCNNGG 2 cut(s) 463, 464
BseGI GGATG 2 cut(s) 224, 328
BseJI GATNNNNATC 1 cut(s) 350
BseLI CCNNNNNNNGG 1 cut(s) 435
BseMI GCAATG 1 cut(s) 388
BseMII CTCAG 1 cut(s) 421
BseSI GKGCMC 1 cut(s) 138
BseXI GCAGC 2 cut(s) 51, 262
Bsh1236I CGCG 1 cut(s) 176
BshFI GGCC 1 cut(s) 479
BshNI GGYRCC 1 cut(s) 438
BshVI ATCGAT 1 cut(s) 129
BsiHKAI GWGCWC 1 cut(s) 138
BsiHKCI CYCGRG 1 cut(s) 463
BsiSI CCGG 3 cut(s) 221, 436, 464
BslI CCNNNNNNNGG 1 cut(s) 435
BsmAI GTCTC 2 cut(s) 253, 293
BsmI GAATGC 1 cut(s) 233
BsnI GGCC 1 cut(s) 479
BsoBI CYCGRG 1 cut(s) 463
Bsp1286I GDGCHC 1 cut(s) 138
Bsp1407I TGTACA 1 cut(s) 82
Bsp143I GATC 2 cut(s) 345, 411
BspACI CCGC 1 cut(s) 332
BspANI GGCC 1 cut(s) 479
BspCNI CTCAG 1 cut(s) 420
BspDI ATCGAT 1 cut(s) 129
BspFNI CGCG 1 cut(s) 176
BspLI GGNNCC 1 cut(s) 440
BspPI GGATC 1 cut(s) 419
BspT107I GGYRCC 1 cut(s) 438
BsrDI GCAATG 1 cut(s) 388
BsrFI RCCGGY 1 cut(s) 435
BsrGI TGTACA 1 cut(s) 82
BssAI RCCGGY 1 cut(s) 435
BssECI CCNNGG 2 cut(s) 463, 464
BssMI GATC 2 cut(s) 345, 411
BssNI GRCGYC 1 cut(s) 460
Bst4CI ACNGT 1 cut(s) 278
BstACI GRCGYC 1 cut(s) 460
BstAUI TGTACA 1 cut(s) 82
BstC8I GCNNGC 4 cut(s) 24, 358, 362, 437
BstDEI CTNAG 2 cut(s) 155, 407
BstF5I GGATG 2 cut(s) 224, 328
BstFNI CGCG 1 cut(s) 176
BstHHI GCGC 2 cut(s) 39, 178
BstKTI GATC 2 cut(s) 348, 414
BstMAI GTCTC 2 cut(s) 253, 293
BstMBI GATC 2 cut(s) 345, 411
BstMWI GCNNNNNNNGC 3 cut(s) 230, 366, 432
BstSCI CCNGG 2 cut(s) 462, 463
BstSFI CTRYAG 1 cut(s) 202
BstSLI GKGCMC 1 cut(s) 138
BstUI CGCG 1 cut(s) 176
BstV1I GCAGC 2 cut(s) 51, 262
BstV2I GAAGAC 1 cut(s) 198
Bsu15I ATCGAT 1 cut(s) 129
BsuRI GGCC 1 cut(s) 479
BsuTUI ATCGAT 1 cut(s) 129
BtgZI GCGATG 1 cut(s) 337
BtrI CACGTC 1 cut(s) 421
BtsCI GGATG 2 cut(s) 224, 328
Cac8I GCNNGC 4 cut(s) 24, 358, 362, 437
CfoI GCGC 2 cut(s) 39, 178
Cfr10I RCCGGY 1 cut(s) 435
Cfr13I GGNCC 1 cut(s) 477
Cfr9I CCCGGG 1 cut(s) 463
ClaI ATCGAT 1 cut(s) 129
CseI GACGC 1 cut(s) 468
Csp6I GTAC 1 cut(s) 83
CviAII CATG 2 cut(s) 211, 272
CviJI RGCY 9 cut(s) 22, 26, 42, 110, 115, 161, 208, 406, 479
CviKI_1 RGCY 9 cut(s) 22, 26, 42, 110, 115, 161, 208, 406, 479
CviQI GTAC 1 cut(s) 83
DdeI CTNAG 2 cut(s) 155, 407
DpnI GATC 2 cut(s) 347, 413
DpnII GATC 2 cut(s) 345, 411
Eco88I CYCGRG 1 cut(s) 463
EcoRI GAATTC 1 cut(s) 170
FaeI CATG 2 cut(s) 214, 275
FaiI YATR 7 cut(s) 87, 89, 98, 212, 273, 320, 494
FatI CATG 2 cut(s) 210, 271
Fnu4HI GCNGC 2 cut(s) 40, 251
FokI GGATG 2 cut(s) 211, 335
Fsp4HI GCNGC 2 cut(s) 40, 251
FspBI CTAG 1 cut(s) 27
FspI TGCGCA 1 cut(s) 38
GlaI GCGC 2 cut(s) 38, 177
GluI GCNGC 2 cut(s) 40, 251
GsuI CTGGAG 1 cut(s) 317
HaeIII GGCC 1 cut(s) 479
HapII CCGG 3 cut(s) 221, 436, 464
HgaI GACGC 1 cut(s) 468
HhaI GCGC 2 cut(s) 39, 178
Hin1I GRCGYC 1 cut(s) 460
Hin1II CATG 2 cut(s) 214, 275
Hin6I GCGC 2 cut(s) 37, 176
HinP1I GCGC 2 cut(s) 37, 176
HinfI GANTC 2 cut(s) 261, 486
HpaII CCGG 3 cut(s) 221, 436, 464
HphI GGTGA 1 cut(s) 340
Hpy166II GTNNAC 1 cut(s) 136
Hpy188I TCNGA 1 cut(s) 229
Hpy188III TCNNGA 3 cut(s) 56, 296, 409
Hpy8I GTNNAC 1 cut(s) 136
HpyCH4III ACNGT 1 cut(s) 278
HpyCH4IV ACGT 2 cut(s) 186, 420
HpyCH4V TGCA 3 cut(s) 136, 250, 393
HpyF10VI GCNNNNNNNGC 3 cut(s) 230, 366, 432
HpyF3I CTNAG 2 cut(s) 155, 407
HpySE526I ACGT 2 cut(s) 186, 420
Hsp92I GRCGYC 1 cut(s) 460
Hsp92II CATG 2 cut(s) 214, 275
HspAI GCGC 2 cut(s) 37, 176
KroI GCCGGC 1 cut(s) 435
KroNI GCCGGC 1 cut(s) 437
Kzo9I GATC 2 cut(s) 345, 411
Lsp1109I GCAGC 2 cut(s) 51, 262
LweI GCATC 2 cut(s) 233, 313
MaeI CTAG 1 cut(s) 27
MaeII ACGT 2 cut(s) 186, 420
MaeIII GTNAC 2 cut(s) 9, 503
MalI GATC 2 cut(s) 347, 413
MboI GATC 2 cut(s) 345, 411
MboII GAAGA 3 cut(s) 71, 203, 495
MhlI GDGCHC 1 cut(s) 138
MluCI AATT 5 cut(s) 104, 123, 170, 196, 513
MlyI GAGTC 1 cut(s) 255
MroNI GCCGGC 1 cut(s) 435
MseI TTAA 1 cut(s) 182
MslI CAYNNNNRTG 1 cut(s) 444
MspI CCGG 3 cut(s) 221, 436, 464
MspR9I CCNGG 2 cut(s) 464, 465
Mva1269I GAATGC 1 cut(s) 233
MvnI CGCG 1 cut(s) 176
MwoI GCNNNNNNNGC 3 cut(s) 230, 366, 432
NaeI GCCGGC 1 cut(s) 437
NciI CCSGG 2 cut(s) 464, 465
NdeII GATC 2 cut(s) 345, 411
NgoMIV GCCGGC 1 cut(s) 435
NlaIII CATG 2 cut(s) 214, 275
NlaIV GGNNCC 1 cut(s) 440
NmeAIII GCCGAG 1 cut(s) 136
NmuCI GTSAC 1 cut(s) 503
NsbI TGCGCA 1 cut(s) 38
PctI GAATGC 1 cut(s) 233
PdiI GCCGGC 1 cut(s) 437
PfeI GAWTC 1 cut(s) 486
PkrI GCNGC 2 cut(s) 41, 252
PleI GAGTC 1 cut(s) 255
PpsI GAGTC 1 cut(s) 255
PspN4I GGNNCC 1 cut(s) 440
PspPI GGNCC 1 cut(s) 477
RsaI GTAC 1 cut(s) 84
RsaNI GTAC 1 cut(s) 83
RseI CAYNNNNRTG 1 cut(s) 444
SaqAI TTAA 1 cut(s) 182
SatI GCNGC 2 cut(s) 40, 251
Sau3AI GATC 2 cut(s) 345, 411
Sau96I GGNCC 1 cut(s) 477
SchI GAGTC 1 cut(s) 255
ScrFI CCNGG 2 cut(s) 464, 465
SduI GDGCHC 1 cut(s) 138
SetI ASST 6 cut(s) 24, 32, 163, 189, 247, 423
SfaNI GCATC 2 cut(s) 233, 313
SfcI CTRYAG 1 cut(s) 202
SmaI CCCGGG 1 cut(s) 465
SmiMI CAYNNNNRTG 1 cut(s) 444
Sse9I AATT 5 cut(s) 104, 123, 170, 196, 513
SsiI CCGC 1 cut(s) 332
SspMI CTAG 1 cut(s) 27
StyD4I CCNGG 2 cut(s) 462, 463
TaaI ACNGT 1 cut(s) 278
TaiI ACGT 2 cut(s) 189, 423
TaqI TCGA 2 cut(s) 129, 399
TasI AATT 5 cut(s) 104, 123, 170, 196, 513
TatI WGTACW 1 cut(s) 82
TfiI GAWTC 1 cut(s) 486
Tru1I TTAA 1 cut(s) 182
Tru9I TTAA 1 cut(s) 182
TseFI GTSAC 1 cut(s) 503
TseI GCWGC 2 cut(s) 39, 250
Tsp45I GTSAC 1 cut(s) 503
TspDTI ATGAA 2 cut(s) 32, 226
TspMI CCCGGG 1 cut(s) 463
VneI GTGCAC 1 cut(s) 134
XapI RAATTY 2 cut(s) 170, 513
XmaI CCCGGG 1 cut(s) 463
XspI CTAG 1 cut(s) 27
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.