Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0010598

Physical Location & Seq

Genomic Coordinates Reverse (-)

71277570 .. 71283544

Gene Structure 5975 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000035756

Sequence Viewer

CDS Protein Promoter (2k)

Length: 537 bp

ATGGAATATAGAGGCATGTGCCAACGGGCGGCTTGGGCAGTCAGCGGGCAGGGCAATACTCTCTCGAGGTCGACGGAGTTATGGGAGAGGTTACAAAACCCCCAAATCCAATCCCCATCCCTTCCATCACCGTTAGGGTACTGGCGATTCAAATTCCAGATTGATTTGCCTGAATGGCCTCCTTTATCTCCCTCATCAACGGCTTCGAATCGGGATGACTCCTCACCTGAGGACGTCGCCCTTTTGTCCTCCACCAAGGCTTTTGCGCAGGACGCCTTGCTCCAATTCCAATTGGAGAAGTTCGATCAGTGCCTCATGGCCTTGCAGGAGTGGCTTAAGAGGAAGGTCGGCAATCCCAAAAACCCCAAAGCAGCAATCTCAGCTCCAAAGCCTTCCTGGTTCTCCCCAGAAAGGCAGGTTGGAGTCGGTGAGGCATCTTTGATAAGTCTTGCAGCTCCGTTCATTGATGACCATGCCCTGCAAATCAGGTTTGACTCCTCCCCCTACATCTTTATCATTTCATATTGGTATTCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03018 map03018

Pfam Domains

Protein Families

TPR_8

Protein Analysis

179

Amino Acids

20.11

Weight (kDa)

5.85

Isoelectric Point (pI)

58.56

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010598)

Species	Orthologous Gene IDs
malus_domestica	MD02G1023900.v1.1 MD15G1167300.v1.1
rosa_chinensis	RchiOBHm_Chr5g0023731
rosa_laevigata	RLG00000001463 RLG00000029246 RLG00000035752 RLG00000035756
rosa_roxburghii	Rroxscaffold_2G00095550 Rroxscaffold_4G00314150 Rroxscaffold_7G00182450
rosa_rugosa	Rorug04G0119400 Rorug05G0415100
rosa_samantha	Rh1AG155200 Rh1BG031200 Rh2AG030900 Rh2BG395900 Rh2CG467200 Rh5CG182000 Rh5CG371300 Rh7CG297800 Rh7CG397200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	237
Acc16I	TGCGCA	1 cut(s)	267
Acc36I	ACCTGC	1 cut(s)	406
AccI	GTMKAC	1 cut(s)	71
AciI	CCGC	2 cut(s)	29, 45
AcsI	RAATTY	1 cut(s)	152
AcyI	GRCGYC	2 cut(s)	234, 273
AfaI	GTAC	1 cut(s)	140
AfiI	CCNNNNNNNGG	2 cut(s)	28, 411
AflII	CTTAAG	1 cut(s)	335
AgsI	TTSAA	1 cut(s)	151
AjnI	CCWGG	1 cut(s)	395
AjuI	GAANNNNNNNTTGG	2 cut(s)	402, 434
AluBI	AGCT	2 cut(s)	383, 455
AluI	AGCT	2 cut(s)	383, 455
Ama87I	CYCGRG	1 cut(s)	64
AoxI	GGCC	2 cut(s)	176, 318
ApeKI	GCWGC	2 cut(s)	371, 452
ApoI	RAATTY	1 cut(s)	152
AspLEI	GCGC	1 cut(s)	268
AsuHPI	GGTGA	3 cut(s)	120, 216, 440
AsuII	TTCGAA	1 cut(s)	206
AvaI	CYCGRG	1 cut(s)	64
AxyI	CCTNAGG	1 cut(s)	228
BbvI	GCAGC	2 cut(s)	383, 464
BccI	CCATC	2 cut(s)	124, 133
BceAI	ACGGC	1 cut(s)	216
BciT130I	CCWGG	1 cut(s)	397
BfrI	CTTAAG	1 cut(s)	335
BfuAI	ACCTGC	1 cut(s)	406
BglI	GCCNNNNNGGC	1 cut(s)	175
BisI	GCNGC	3 cut(s)	30, 372, 453
BlsI	GCNGC	3 cut(s)	31, 373, 454
Bme1390I	CCNGG	1 cut(s)	397
BmeT110I	CYCGRG	1 cut(s)	64
BmrFI	CCNGG	1 cut(s)	397
BmsI	GCATC	1 cut(s)	443
Bpu14I	TTCGAA	1 cut(s)	206
BsaHI	GRCGYC	2 cut(s)	234, 273
BsaJI	CCNNGG	1 cut(s)	255
Bsc4I	CCNNNNNNNGG	2 cut(s)	28, 411
Bse1I	ACTGG	1 cut(s)	146
Bse21I	CCTNAGG	1 cut(s)	228
BseBI	CCWGG	1 cut(s)	397
BseDI	CCNNGG	1 cut(s)	255
BseGI	GGATG	2 cut(s)	116, 220
BseLI	CCNNNNNNNGG	2 cut(s)	28, 411
BseMII	CTCAG	2 cut(s)	219, 393
BseNI	ACTGG	1 cut(s)	146
BseRI	GAGGAG	2 cut(s)	211, 487
BseXI	GCAGC	2 cut(s)	383, 464
BshFI	GGCC	2 cut(s)	178, 320
BsiHKCI	CYCGRG	1 cut(s)	64
BslI	CCNNNNNNNGG	2 cut(s)	28, 411
BsnI	GGCC	2 cut(s)	178, 320
BsoBI	CYCGRG	1 cut(s)	64
Bsp119I	TTCGAA	1 cut(s)	206
Bsp143I	GATC	1 cut(s)	304
BspACI	CCGC	2 cut(s)	29, 45
BspANI	GGCC	2 cut(s)	178, 320
BspCNI	CTCAG	2 cut(s)	220, 392
BspMI	ACCTGC	1 cut(s)	406
BspT104I	TTCGAA	1 cut(s)	206
BspTI	CTTAAG	1 cut(s)	335
BsrI	ACTGG	1 cut(s)	146
BssECI	CCNNGG	1 cut(s)	255
BssMI	GATC	1 cut(s)	304
BssNI	GRCGYC	2 cut(s)	234, 273
BssT1I	CCWWGG	1 cut(s)	255
Bst2UI	CCWGG	1 cut(s)	397
Bst4CI	ACNGT	1 cut(s)	132
BstACI	GRCGYC	2 cut(s)	234, 273
BstAFI	CTTAAG	1 cut(s)	335
BstBI	TTCGAA	1 cut(s)	206
BstC8I	GCNNGC	1 cut(s)	47
BstDEI	CTNAG	2 cut(s)	228, 379
BstF5I	GGATG	2 cut(s)	116, 220
BstHHI	GCGC	1 cut(s)	268
BstKTI	GATC	1 cut(s)	307
BstMBI	GATC	1 cut(s)	304
BstMWI	GCNNNNNNNGC	6 cut(s)	35, 51, 175, 272, 331, 380
BstNI	CCWGG	1 cut(s)	397
BstNSI	RCATGY	1 cut(s)	19
BstSCI	CCNGG	1 cut(s)	395
BstV1I	GCAGC	2 cut(s)	383, 464
Bsu36I	CCTNAGG	1 cut(s)	228
BsuRI	GGCC	2 cut(s)	178, 320
BtsCI	GGATG	2 cut(s)	116, 220
BtsIMutI	CAGTG	1 cut(s)	314
BveI	ACCTGC	1 cut(s)	406
Cac8I	GCNNGC	1 cut(s)	47
CfoI	GCGC	1 cut(s)	268
CseI	GACGC	1 cut(s)	281
Csp6I	GTAC	1 cut(s)	139
CviAII	CATG	3 cut(s)	16, 316, 473
CviJI	RGCY	9 cut(s)	32, 178, 203, 260, 320, 334, 383, 391, 455
CviKI_1	RGCY	9 cut(s)	32, 178, 203, 260, 320, 334, 383, 391, 455
CviQI	GTAC	1 cut(s)	139
DdeI	CTNAG	2 cut(s)	228, 379
DpnI	GATC	1 cut(s)	306
DpnII	GATC	1 cut(s)	304
Eco130I	CCWWGG	1 cut(s)	255
Eco81I	CCTNAGG	1 cut(s)	228
Eco88I	CYCGRG	1 cut(s)	64
EcoRII	CCWGG	1 cut(s)	395
EcoT14I	CCWWGG	1 cut(s)	255
ErhI	CCWWGG	1 cut(s)	255
FaeI	CATG	3 cut(s)	19, 319, 476
FaiI	YATR	7 cut(s)	9, 17, 82, 317, 474, 523, 535
FatI	CATG	3 cut(s)	15, 315, 472
FauI	CCCGC	1 cut(s)	38
FblI	GTMKAC	1 cut(s)	71
Fnu4HI	GCNGC	3 cut(s)	30, 372, 453
FokI	GGATG	2 cut(s)	103, 227
Fsp4HI	GCNGC	3 cut(s)	30, 372, 453
FspI	TGCGCA	1 cut(s)	267
GlaI	GCGC	1 cut(s)	267
GluI	GCNGC	3 cut(s)	30, 372, 453
HaeIII	GGCC	2 cut(s)	178, 320
HgaI	GACGC	1 cut(s)	281
HhaI	GCGC	1 cut(s)	268
Hin1I	GRCGYC	2 cut(s)	234, 273
Hin1II	CATG	3 cut(s)	19, 319, 476
Hin6I	GCGC	1 cut(s)	266
HinP1I	GCGC	1 cut(s)	266
HincII	GTYRAC	1 cut(s)	72
HindII	GTYRAC	1 cut(s)	72
HinfI	GANTC	5 cut(s)	147, 208, 218, 423, 494
HphI	GGTGA	3 cut(s)	120, 216, 440
Hpy166II	GTNNAC	1 cut(s)	72
Hpy188III	TCNNGA	3 cut(s)	64, 157, 212
Hpy8I	GTNNAC	1 cut(s)	72
Hpy99I	CGWCG	2 cut(s)	76, 239
HpyAV	CCTTC	3 cut(s)	131, 337, 402
HpyCH4III	ACNGT	1 cut(s)	132
HpyCH4IV	ACGT	1 cut(s)	234
HpyCH4V	TGCA	3 cut(s)	325, 452, 481
HpyF10VI	GCNNNNNNNGC	6 cut(s)	35, 51, 175, 272, 331, 380
HpyF3I	CTNAG	2 cut(s)	228, 379
HpySE526I	ACGT	1 cut(s)	234
Hsp92I	GRCGYC	2 cut(s)	234, 273
Hsp92II	CATG	3 cut(s)	19, 319, 476
HspAI	GCGC	1 cut(s)	266
Kzo9I	GATC	1 cut(s)	304
LmnI	GCTCC	3 cut(s)	285, 388, 460
Lsp1109I	GCAGC	2 cut(s)	383, 464
LweI	GCATC	1 cut(s)	443
MaeII	ACGT	1 cut(s)	234
MaeIII	GTNAC	1 cut(s)	90
MalI	GATC	1 cut(s)	306
MboI	GATC	1 cut(s)	304
MfeI	CAATTG	1 cut(s)	290
MluCI	AATT	3 cut(s)	152, 284, 290
MlyI	GAGTC	3 cut(s)	212, 432, 488
MmeI	TCCRAC	1 cut(s)	400
MseI	TTAA	1 cut(s)	336
MspA1I	CMGCKG	1 cut(s)	45
MspCI	CTTAAG	1 cut(s)	335
MspR9I	CCNGG	1 cut(s)	397
MunI	CAATTG	1 cut(s)	290
MvaI	CCWGG	1 cut(s)	397
MwoI	GCNNNNNNNGC	6 cut(s)	35, 51, 175, 272, 331, 380
NdeII	GATC	1 cut(s)	304
NlaIII	CATG	3 cut(s)	19, 319, 476
NsbI	TGCGCA	1 cut(s)	267
NspI	RCATGY	1 cut(s)	19
NspV	TTCGAA	1 cut(s)	206
PaeR7I	CTCGAG	1 cut(s)	64
PfeI	GAWTC	2 cut(s)	147, 208
PkrI	GCNGC	3 cut(s)	31, 373, 454
PleI	GAGTC	3 cut(s)	212, 431, 488
PpsI	GAGTC	3 cut(s)	212, 431, 488
Psp6I	CCWGG	1 cut(s)	395
PspGI	CCWGG	1 cut(s)	395
RsaI	GTAC	1 cut(s)	140
RsaNI	GTAC	1 cut(s)	139
SalI	GTCGAC	1 cut(s)	70
SaqAI	TTAA	1 cut(s)	336
SatI	GCNGC	3 cut(s)	30, 372, 453
Sau3AI	GATC	1 cut(s)	304
SchI	GAGTC	3 cut(s)	212, 432, 488
ScrFI	CCNGG	1 cut(s)	397
SetI	ASST	9 cut(s)	71, 92, 229, 237, 348, 385, 420, 457, 491
SfaNI	GCATC	1 cut(s)	443
Sfr274I	CTCGAG	1 cut(s)	64
SfuI	TTCGAA	1 cut(s)	206
SlaI	CTCGAG	1 cut(s)	64
SmlI	CTYRAG	2 cut(s)	64, 335
SmoI	CTYRAG	2 cut(s)	64, 335
Sse9I	AATT	3 cut(s)	152, 284, 290
SsiI	CCGC	2 cut(s)	29, 45
StyD4I	CCNGG	1 cut(s)	395
StyI	CCWWGG	1 cut(s)	255
TaaI	ACNGT	1 cut(s)	132
TaiI	ACGT	1 cut(s)	237
TaqI	TCGA	4 cut(s)	65, 71, 206, 303
TasI	AATT	3 cut(s)	152, 284, 290
TauI	GCSGC	1 cut(s)	32
TfiI	GAWTC	2 cut(s)	147, 208
Tru1I	TTAA	1 cut(s)	336
Tru9I	TTAA	1 cut(s)	336
TscAI	CASTG	1 cut(s)	314
TseI	GCWGC	2 cut(s)	371, 452
TspDTI	ATGAA	3 cut(s)	451, 510, 522
TspGWI	ACGGA	2 cut(s)	89, 447
TspRI	CASTG	1 cut(s)	314
Vha464I	CTTAAG	1 cut(s)	335
XapI	RAATTY	1 cut(s)	152
XceI	RCATGY	1 cut(s)	19
XcmI	CCANNNNNNNNNTGG	1 cut(s)	393
XhoI	CTCGAG	1 cut(s)	64
XmiI	GTMKAC	1 cut(s)	71
ZraI	GACGTC	1 cut(s)	235

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.