Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr17

Orthogroup ID

OG0013736

Physical Location & Seq

Genomic Coordinates Reverse (-)

9784397 .. 9784735

Gene Structure 339 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD17G1114100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 339 bp

ATGTCGAAGCTTAAGAAGCTGGAGCTTTTAAATTTAAAGAACAATCAGTTGACTGGTCATATCCCTACAACTCTCACGCAAATTCTGAACCTTAAAACTCTTGATCTTGCTCAGATTAAGCTTACTAGTGAGATTCCAAGGCTAATATATTGGAATGAAGTATTGCAGTACCTTGGATTGCGCATAAACTCATTAACCGGATCACTGTCACCTGATATGTGTCAATTAACAAGCTTGTGGTACTTTGACGTTAGAGGCAATAATCTGACTGGCACGATCCCAGACAACATTGGAAATTGCACAAGCTATGAGATCCTGGATATATTGTCAGTGTTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0005102 GO:0005488 GO:0005515 GO:0005575 GO:0007275 GO:0008150 GO:0009553 GO:0009653 GO:0009791 GO:0009888 GO:0009908 GO:0010016 GO:0010103 GO:0010374 GO:0016020 GO:0022414 GO:0032501 GO:0032502 GO:0033612 GO:0035670 GO:0048229 GO:0048367 GO:0048437 GO:0048438 GO:0048440 GO:0048467 GO:0048481 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0061458 GO:0090558 GO:0090567 GO:0090626 GO:0090698 GO:0099402

KEGG Pathways

Metabolic & Signaling

ko04016 map04016

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_4 LRR_6 LRR_8 Pkinase

Protein Analysis

113

Amino Acids

12.7

Weight (kDa)

6.54

Isoelectric Point (pI)

29.83

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0013736)

Species	Orthologous Gene IDs
malus_domestica	MD07G1055500.v1.1 MD17G1114100.v1.1
rosa_multiflora	Rmu_sc0002111.1_g000038 Rmu_sc0005223.1_g000024 Rmu_sc0005223.1_g000025 Rmu_sc0005664.1_g000044 Rmu_sc0009850.1_g000003
rosa_roxburghii	Rroxscaffold_1G00027310 Rroxscaffold_5G00355040 Rroxscaffold_7G00188050 Rroxscaffold_7G00199140 Rroxscaffold_7G00213780
rosa_rugosa	Rorug03G0293000
rosa_samantha	Rh5AG304200 Rh5AG409800 Rh5BG219300 Rh6BG266900
rosa_wichuraiana	Rw4G016630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	182
AclWI	GGATC	3 cut(s)	208, 271, 307
AcsI	RAATTY	2 cut(s)	31, 81
AfaI	GTAC	2 cut(s)	170, 242
AflII	CTTAAG	1 cut(s)	11
AhlI	ACTAGT	1 cut(s)	125
AjnI	CCWGG	1 cut(s)	315
AluBI	AGCT	6 cut(s)	10, 19, 25, 121, 234, 306
AluI	AGCT	6 cut(s)	10, 19, 25, 121, 234, 306
AlwI	GGATC	3 cut(s)	208, 271, 307
ApoI	RAATTY	2 cut(s)	31, 81
AspLEI	GCGC	1 cut(s)	183
AsuHPI	GGTGA	1 cut(s)	201
BciT130I	CCWGG	1 cut(s)	317
BcuI	ACTAGT	1 cut(s)	125
BfaI	CTAG	1 cut(s)	126
BfrI	CTTAAG	1 cut(s)	11
Bme1390I	CCNGG	1 cut(s)	317
BmrFI	CCNGG	1 cut(s)	317
BpmI	CTGGAG	1 cut(s)	41
BsaJI	CCNNGG	2 cut(s)	137, 172
BsaWI	WCCGGW	1 cut(s)	197
Bse1I	ACTGG	2 cut(s)	58, 274
BseBI	CCWGG	1 cut(s)	317
BseDI	CCNNGG	2 cut(s)	137, 172
BseMII	CTCAG	1 cut(s)	125
BseNI	ACTGG	2 cut(s)	58, 274
BsiSI	CCGG	1 cut(s)	198
Bsp143I	GATC	4 cut(s)	103, 200, 276, 312
BspCNI	CTCAG	1 cut(s)	124
BspPI	GGATC	3 cut(s)	208, 271, 307
BspTI	CTTAAG	1 cut(s)	11
BsrI	ACTGG	2 cut(s)	58, 274
BssECI	CCNNGG	2 cut(s)	137, 172
BssMI	GATC	4 cut(s)	103, 200, 276, 312
BssT1I	CCWWGG	2 cut(s)	137, 172
Bst2UI	CCWGG	1 cut(s)	317
Bst4CI	ACNGT	1 cut(s)	207
BstAFI	CTTAAG	1 cut(s)	11
BstDEI	CTNAG	1 cut(s)	111
BstHHI	GCGC	1 cut(s)	183
BstKTI	GATC	4 cut(s)	106, 203, 279, 315
BstMBI	GATC	4 cut(s)	103, 200, 276, 312
BstMWI	GCNNNNNNNGC	1 cut(s)	16
BstNI	CCWGG	1 cut(s)	317
BstSCI	CCNGG	1 cut(s)	315
BstX2I	RGATCY	1 cut(s)	312
BstYI	RGATCY	1 cut(s)	312
BtsIMutI	CAGTG	2 cut(s)	203, 336
CfoI	GCGC	1 cut(s)	183
Csp6I	GTAC	2 cut(s)	169, 241
CviJI	RGCY	7 cut(s)	10, 19, 25, 121, 142, 234, 306
CviKI_1	RGCY	7 cut(s)	10, 19, 25, 121, 142, 234, 306
CviQI	GTAC	2 cut(s)	169, 241
DdeI	CTNAG	1 cut(s)	111
DpnI	GATC	4 cut(s)	105, 202, 278, 314
DpnII	GATC	4 cut(s)	103, 200, 276, 312
DraI	TTTAAA	2 cut(s)	30, 36
Eco130I	CCWWGG	2 cut(s)	137, 172
EcoRII	CCWGG	1 cut(s)	315
EcoT14I	CCWWGG	2 cut(s)	137, 172
ErhI	CCWWGG	2 cut(s)	137, 172
FaiI	YATR	6 cut(s)	60, 148, 185, 218, 309, 323
FspBI	CTAG	1 cut(s)	126
FspI	TGCGCA	1 cut(s)	182
GlaI	GCGC	1 cut(s)	182
GsuI	CTGGAG	1 cut(s)	41
HapII	CCGG	1 cut(s)	198
HhaI	GCGC	1 cut(s)	183
Hin6I	GCGC	1 cut(s)	181
HinP1I	GCGC	1 cut(s)	181
HincII	GTYRAC	1 cut(s)	51
HindII	GTYRAC	1 cut(s)	51
HindIII	AAGCTT	3 cut(s)	8, 119, 232
HinfI	GANTC	1 cut(s)	133
HpaII	CCGG	1 cut(s)	198
HphI	GGTGA	1 cut(s)	201
Hpy166II	GTNNAC	1 cut(s)	51
Hpy188I	TCNGA	3 cut(s)	87, 114, 267
Hpy188III	TCNNGA	1 cut(s)	101
Hpy8I	GTNNAC	1 cut(s)	51
HpyCH4III	ACNGT	1 cut(s)	207
HpyCH4IV	ACGT	1 cut(s)	249
HpyCH4V	TGCA	2 cut(s)	166, 300
HpyF10VI	GCNNNNNNNGC	1 cut(s)	16
HpyF3I	CTNAG	1 cut(s)	111
HpySE526I	ACGT	1 cut(s)	249
HspAI	GCGC	1 cut(s)	181
Kzo9I	GATC	4 cut(s)	103, 200, 276, 312
LmnI	GCTCC	1 cut(s)	22
LpnPI	CCDG	8 cut(s)	5, 39, 211, 225, 255, 294, 302, 329
MaeI	CTAG	1 cut(s)	126
MaeII	ACGT	1 cut(s)	249
MaeIII	GTNAC	1 cut(s)	207
MalI	GATC	4 cut(s)	105, 202, 278, 314
MboI	GATC	4 cut(s)	103, 200, 276, 312
MflI	RGATCY	1 cut(s)	312
MluCI	AATT	4 cut(s)	31, 81, 224, 295
MnlI	CCTC	1 cut(s)	248
MseI	TTAA	7 cut(s)	12, 29, 35, 93, 117, 194, 227
MspCI	CTTAAG	1 cut(s)	11
MspI	CCGG	1 cut(s)	198
MspR9I	CCNGG	1 cut(s)	317
MvaI	CCWGG	1 cut(s)	317
MwoI	GCNNNNNNNGC	1 cut(s)	16
NdeII	GATC	4 cut(s)	103, 200, 276, 312
NmuCI	GTSAC	1 cut(s)	207
NsbI	TGCGCA	1 cut(s)	182
PfeI	GAWTC	1 cut(s)	133
PfoI	TCCNGGA	1 cut(s)	315
Psp6I	CCWGG	1 cut(s)	315
PspGI	CCWGG	1 cut(s)	315
PsuI	RGATCY	1 cut(s)	312
RsaI	GTAC	2 cut(s)	170, 242
RsaNI	GTAC	2 cut(s)	169, 241
SaqAI	TTAA	7 cut(s)	12, 29, 35, 93, 117, 194, 227
Sau3AI	GATC	4 cut(s)	103, 200, 276, 312
ScrFI	CCNGG	1 cut(s)	317
SmlI	CTYRAG	1 cut(s)	11
SmoI	CTYRAG	1 cut(s)	11
SpeI	ACTAGT	1 cut(s)	125
Sse9I	AATT	4 cut(s)	31, 81, 224, 295
SspMI	CTAG	1 cut(s)	126
StyD4I	CCNGG	1 cut(s)	315
StyI	CCWWGG	2 cut(s)	137, 172
TaaI	ACNGT	1 cut(s)	207
TaiI	ACGT	1 cut(s)	252
TaqI	TCGA	1 cut(s)	5
TasI	AATT	4 cut(s)	31, 81, 224, 295
TfiI	GAWTC	1 cut(s)	133
Tru1I	TTAA	7 cut(s)	12, 29, 35, 93, 117, 194, 227
Tru9I	TTAA	7 cut(s)	12, 29, 35, 93, 117, 194, 227
TscAI	CASTG	2 cut(s)	210, 336
TseFI	GTSAC	1 cut(s)	207
Tsp45I	GTSAC	1 cut(s)	207
TspDTI	ATGAA	1 cut(s)	171
TspRI	CASTG	2 cut(s)	210, 336
Vha464I	CTTAAG	1 cut(s)	11
XapI	RAATTY	2 cut(s)	31, 81
XspI	CTAG	1 cut(s)	126

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.