Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0013736

Physical Location & Seq

Genomic Coordinates Forward (+)

64194514 .. 64203740

Gene Structure 9227 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00213780.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 762 bp

ATGGCAAACTGCATCGTCAAAGTTGTTGCTAATCTCATCAGCTACCGTCATATGGCAACAAGATCTTCTTCACATTATGTCATTCTTGCCCAAAGATCCGAACTTTGTGAATCATTCGAGTTACATTGGCTGGAAAGTGTTGCTGATGGCCTGCAAAAATGCAAGAAAGGTGTGTTTGGGACTAAAGGTGGCGATAAAGAGTTTATCATCCAAAGTAACTTGCAATATGCTGCCCTAAGTGCTCTTAGAAGACTTCCATTGGATCCAGGAAACCCAACTTTTTTGTACCGTGCTGTTCAAGGATCCGAGAAGTGTGACCTCCTCCTCGACGTGGATCCTCATGTCGTCGCCGGCGGCGTGTTGTTTGAGCCGAAGGATGGGCTCGTAGGCCTTGAAGCGGAGGATCTCCGGCTCCACGAGCTTGATTGGGCAGCCGTTGGTCTTGATCAAGCCGCGGCCTTCCTTGCGCAGGGTGACGGCCACCGCCGTCTTCTTGCGGTCAAAGCACTAGATCGATTTGATCTGGGGAGCCGCCATGGTCGACCGGAATCACCGACAAGCAAGGTTGAACCGCAGCACCAACTCGAAAGCCGTCCGCTCCCCGCCGATGCCGAATCAAGCCAAAGTCGAGCACGAAAGATTGCAGTGCTCAACTCTCGTCGGCAAAAGCACCCAAATCCAACTAGAGAACAGTCTTCAAACTTCCTTAACCTCTCTTTACACCCCGAAGGTGACACTAGAGAACAACCACGCCTGCCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SH3_1 SH3_9

Protein Analysis

253

Amino Acids

28.04

Weight (kDa)

7.16

Isoelectric Point (pI)

54.33

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013736)

Species	Orthologous Gene IDs
malus_domestica	MD07G1055500.v1.1 MD17G1114100.v1.1
rosa_multiflora	Rmu_sc0002111.1_g000038 Rmu_sc0005223.1_g000024 Rmu_sc0005223.1_g000025 Rmu_sc0005664.1_g000044 Rmu_sc0009850.1_g000003
rosa_roxburghii	Rroxscaffold_1G00027310 Rroxscaffold_5G00355040 Rroxscaffold_7G00188050 Rroxscaffold_7G00199140 Rroxscaffold_7G00213780
rosa_rugosa	Rorug03G0293000
rosa_samantha	Rh5AG304200 Rh5AG409800 Rh5BG219300 Rh6BG266900
rosa_wichuraiana	Rw4G016630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	468
AccBSI	CCGCTC	1 cut(s)	598
AccI	GTMKAC	1 cut(s)	541
AccII	CGCG	1 cut(s)	455
AclWI	GGATC	8 cut(s)	90, 257, 270, 297, 310, 329, 342, 411
AcoI	YGGCCR	1 cut(s)	478
AfaI	GTAC	1 cut(s)	287
AfiI	CCNNNNNNNGG	5 cut(s)	52, 331, 377, 397, 469
AgsI	TTSAA	4 cut(s)	299, 395, 569, 699
AjiI	CACGTC	1 cut(s)	331
AjnI	CCWGG	1 cut(s)	265
AluBI	AGCT	2 cut(s)	42, 421
AluI	AGCT	2 cut(s)	42, 421
Alw21I	GWGCWC	3 cut(s)	244, 634, 651
AlwI	GGATC	8 cut(s)	90, 257, 270, 297, 310, 329, 342, 411
AoxI	GGCC	4 cut(s)	148, 388, 456, 478
ApeKI	GCWGC	3 cut(s)	230, 431, 574
AspLEI	GCGC	1 cut(s)	469
AsuHPI	GGTGA	3 cut(s)	485, 543, 743
BamHI	GGATCC	3 cut(s)	262, 302, 334
BanII	GRGCYC	1 cut(s)	384
BauI	CACGAG	1 cut(s)	416
BbsI	GAAGAC	3 cut(s)	256, 482, 687
Bbv12I	GWGCWC	3 cut(s)	244, 634, 651
BbvI	GCAGC	3 cut(s)	217, 443, 586
BccI	CCATC	2 cut(s)	140, 371
BceAI	ACGGC	4 cut(s)	419, 471, 493, 576
BciT130I	CCWGG	1 cut(s)	267
BclI	TGATCA	1 cut(s)	445
BfaI	CTAG	4 cut(s)	509, 684, 738, 760
BglII	AGATCT	1 cut(s)	62
BisI	GCNGC	7 cut(s)	231, 355, 432, 453, 456, 532, 575
BlsI	GCNGC	7 cut(s)	232, 356, 433, 454, 457, 533, 576
Bme1390I	CCNGG	1 cut(s)	267
BmgBI	CACGTC	1 cut(s)	331
BmiI	GGNNCC	5 cut(s)	264, 304, 336, 413, 530
BmrFI	CCNGG	1 cut(s)	267
BmsI	GCATC	2 cut(s)	21, 598
BpiI	GAAGAC	3 cut(s)	256, 482, 687
Bsa29I	ATCGAT	1 cut(s)	514
BsaJI	CCNNGG	2 cut(s)	453, 535
BsaWI	WCCGGW	1 cut(s)	544
Bsc4I	CCNNNNNNNGG	5 cut(s)	52, 331, 377, 397, 469
Bse118I	RCCGGY	1 cut(s)	350
BseBI	CCWGG	1 cut(s)	267
BseCI	ATCGAT	1 cut(s)	514
BseDI	CCNNGG	2 cut(s)	453, 535
BseGI	GGATG	2 cut(s)	207, 382
BseLI	CCNNNNNNNGG	5 cut(s)	52, 331, 377, 397, 469
BseRI	GAGGAG	2 cut(s)	311, 314
BseXI	GCAGC	3 cut(s)	217, 443, 586
Bsh1236I	CGCG	1 cut(s)	455
Bsh1285I	CGRYCG	1 cut(s)	545
BshFI	GGCC	4 cut(s)	150, 390, 458, 480
BshVI	ATCGAT	1 cut(s)	514
BsiEI	CGRYCG	1 cut(s)	545
BsiHKAI	GWGCWC	3 cut(s)	244, 634, 651
BsiSI	CCGG	3 cut(s)	351, 409, 545
BslFI	GGGAC	1 cut(s)	193
BslI	CCNNNNNNNGG	5 cut(s)	52, 331, 377, 397, 469
BsmFI	GGGAC	1 cut(s)	193
BsnI	GGCC	4 cut(s)	150, 390, 458, 480
Bsp1286I	GDGCHC	4 cut(s)	244, 384, 634, 651
Bsp143I	GATC	9 cut(s)	62, 95, 262, 302, 334, 403, 445, 511, 520
Bsp19I	CCATGG	1 cut(s)	535
BspANI	GGCC	4 cut(s)	150, 390, 458, 480
BspDI	ATCGAT	1 cut(s)	514
BspFNI	CGCG	1 cut(s)	455
BspLI	GGNNCC	5 cut(s)	264, 304, 336, 413, 530
BspPI	GGATC	8 cut(s)	90, 257, 270, 297, 310, 329, 342, 411
BsrBI	CCGCTC	1 cut(s)	598
BsrFI	RCCGGY	1 cut(s)	350
BssAI	RCCGGY	1 cut(s)	350
BssECI	CCNNGG	2 cut(s)	453, 535
BssMI	GATC	9 cut(s)	62, 95, 262, 302, 334, 403, 445, 511, 520
BssSI	CACGAG	1 cut(s)	416
BssT1I	CCWWGG	1 cut(s)	535
Bst2BI	CACGAG	1 cut(s)	416
Bst2UI	CCWGG	1 cut(s)	267
Bst4CI	ACNGT	3 cut(s)	47, 290, 693
BstC8I	GCNNGC	3 cut(s)	152, 352, 755
BstDEI	CTNAG	2 cut(s)	236, 245
BstDSI	CCRYGG	2 cut(s)	453, 535
BstENI	CCTNNNNNAGG	1 cut(s)	467
BstF5I	GGATG	2 cut(s)	207, 382
BstFNI	CGCG	1 cut(s)	455
BstHHI	GCGC	1 cut(s)	469
BstKTI	GATC	9 cut(s)	65, 98, 265, 305, 337, 406, 448, 514, 523
BstMBI	GATC	9 cut(s)	62, 95, 262, 302, 334, 403, 445, 511, 520
BstMCI	CGRYCG	1 cut(s)	545
BstMWI	GCNNNNNNNGC	4 cut(s)	239, 418, 464, 503
BstNI	CCWGG	1 cut(s)	267
BstSCI	CCNGG	1 cut(s)	265
BstUI	CGCG	1 cut(s)	455
BstV1I	GCAGC	3 cut(s)	217, 443, 586
BstV2I	GAAGAC	3 cut(s)	256, 482, 687
BstX2I	RGATCY	6 cut(s)	62, 95, 262, 302, 334, 403
BstYI	RGATCY	6 cut(s)	62, 95, 262, 302, 334, 403
Bsu15I	ATCGAT	1 cut(s)	514
BsuRI	GGCC	4 cut(s)	150, 390, 458, 480
BsuTUI	ATCGAT	1 cut(s)	514
BtgI	CCRYGG	2 cut(s)	453, 535
BtrI	CACGTC	1 cut(s)	331
BtsCI	GGATG	2 cut(s)	207, 382
BtsI	GCAGTG	1 cut(s)	651
BtsIMutI	CAGTG	1 cut(s)	651
Cac8I	GCNNGC	3 cut(s)	152, 352, 755
CfoI	GCGC	1 cut(s)	469
Cfr10I	RCCGGY	1 cut(s)	350
Cfr42I	CCGCGG	1 cut(s)	456
ClaI	ATCGAT	1 cut(s)	514
Csp6I	GTAC	1 cut(s)	286
CviAII	CATG	2 cut(s)	341, 536
CviQI	GTAC	1 cut(s)	286
DdeI	CTNAG	2 cut(s)	236, 245
DpnI	GATC	9 cut(s)	64, 97, 264, 304, 336, 405, 447, 513, 522
DpnII	GATC	9 cut(s)	62, 95, 262, 302, 334, 403, 445, 511, 520
EaeI	YGGCCR	1 cut(s)	478
Eco130I	CCWWGG	1 cut(s)	535
Eco147I	AGGCCT	1 cut(s)	390
Eco24I	GRGCYC	1 cut(s)	384
EcoNI	CCTNNNNNAGG	1 cut(s)	467
EcoRII	CCWGG	1 cut(s)	265
EcoT14I	CCWWGG	1 cut(s)	535
EcoT38I	GRGCYC	1 cut(s)	384
ErhI	CCWWGG	1 cut(s)	535
FaeI	CATG	2 cut(s)	344, 539
FaiI	YATR	6 cut(s)	51, 53, 78, 228, 342, 537
FalI	AAGNNNNNCTT	2 cut(s)	52, 84
FaqI	GGGAC	1 cut(s)	193
FatI	CATG	2 cut(s)	340, 535
FauI	CCCGC	1 cut(s)	610
FauNDI	CATATG	1 cut(s)	51
FbaI	TGATCA	1 cut(s)	445
FblI	GTMKAC	1 cut(s)	541
Fnu4HI	GCNGC	7 cut(s)	231, 355, 432, 453, 456, 532, 575
FokI	GGATG	2 cut(s)	194, 389
FriOI	GRGCYC	1 cut(s)	384
Fsp4HI	GCNGC	7 cut(s)	231, 355, 432, 453, 456, 532, 575
FspBI	CTAG	4 cut(s)	509, 684, 738, 760
FspI	TGCGCA	1 cut(s)	468
GlaI	GCGC	1 cut(s)	468
GluI	GCNGC	7 cut(s)	231, 355, 432, 453, 456, 532, 575
HaeIII	GGCC	4 cut(s)	150, 390, 458, 480
HapII	CCGG	3 cut(s)	351, 409, 545
HhaI	GCGC	1 cut(s)	469
Hin1II	CATG	2 cut(s)	344, 539
Hin6I	GCGC	1 cut(s)	467
HinP1I	GCGC	1 cut(s)	467
HincII	GTYRAC	1 cut(s)	542
HindII	GTYRAC	1 cut(s)	542
HinfI	GANTC	3 cut(s)	110, 548, 614
HpaII	CCGG	3 cut(s)	351, 409, 545
HphI	GGTGA	3 cut(s)	485, 543, 743
Hpy166II	GTNNAC	1 cut(s)	542
Hpy188I	TCNGA	2 cut(s)	100, 307
Hpy188III	TCNNGA	1 cut(s)	443
Hpy8I	GTNNAC	1 cut(s)	542
Hpy99I	CGWCG	3 cut(s)	332, 350, 663
HpyAV	CCTTC	3 cut(s)	367, 469, 722
HpyCH4III	ACNGT	3 cut(s)	47, 290, 693
HpyCH4IV	ACGT	1 cut(s)	330
HpyCH4V	TGCA	5 cut(s)	12, 154, 162, 223, 644
HpyF10VI	GCNNNNNNNGC	4 cut(s)	239, 418, 464, 503
HpyF3I	CTNAG	2 cut(s)	236, 245
HpySE526I	ACGT	1 cut(s)	330
Hsp92II	CATG	2 cut(s)	344, 539
HspAI	GCGC	1 cut(s)	467
KroI	GCCGGC	1 cut(s)	350
KroNI	GCCGGC	1 cut(s)	352
Ksp22I	TGATCA	1 cut(s)	445
KspI	CCGCGG	1 cut(s)	456
Kzo9I	GATC	9 cut(s)	62, 95, 262, 302, 334, 403, 445, 511, 520
LmnI	GCTCC	3 cut(s)	417, 528, 603
LpnPI	CCDG	9 cut(s)	116, 164, 252, 279, 364, 422, 455, 509, 558
Lsp1109I	GCAGC	3 cut(s)	217, 443, 586
LweI	GCATC	2 cut(s)	21, 598
MaeI	CTAG	4 cut(s)	509, 684, 738, 760
MaeII	ACGT	1 cut(s)	330
MaeIII	GTNAC	5 cut(s)	120, 215, 314, 473, 731
MalI	GATC	9 cut(s)	64, 97, 264, 304, 336, 405, 447, 513, 522
MbiI	CCGCTC	1 cut(s)	598
MboI	GATC	9 cut(s)	62, 95, 262, 302, 334, 403, 445, 511, 520
MboII	GAAGA	5 cut(s)	57, 60, 261, 482, 687
MflI	RGATCY	6 cut(s)	62, 95, 262, 302, 334, 403
MhlI	GDGCHC	4 cut(s)	244, 384, 634, 651
MmeI	TCCRAC	1 cut(s)	704
MnlI	CCTC	6 cut(s)	329, 332, 335, 348, 394, 722
MreI	CGCCGGCG	1 cut(s)	350
MroNI	GCCGGC	1 cut(s)	350
MseI	TTAA	1 cut(s)	708
MspA1I	CMGCKG	1 cut(s)	455
MspI	CCGG	3 cut(s)	351, 409, 545
MspR9I	CCNGG	1 cut(s)	267
MvaI	CCWGG	1 cut(s)	267
MvnI	CGCG	1 cut(s)	455
MwoI	GCNNNNNNNGC	4 cut(s)	239, 418, 464, 503
NaeI	GCCGGC	1 cut(s)	352
NcoI	CCATGG	1 cut(s)	535
NdeI	CATATG	1 cut(s)	51
NdeII	GATC	9 cut(s)	62, 95, 262, 302, 334, 403, 445, 511, 520
NgoMIV	GCCGGC	1 cut(s)	350
NlaIII	CATG	2 cut(s)	344, 539
NlaIV	GGNNCC	5 cut(s)	264, 304, 336, 413, 530
NmuCI	GTSAC	3 cut(s)	314, 473, 731
NsbI	TGCGCA	1 cut(s)	468
PceI	AGGCCT	1 cut(s)	390
PcsI	WCGNNNNNNNCGW	1 cut(s)	354
PdiI	GCCGGC	1 cut(s)	352
PfeI	GAWTC	3 cut(s)	110, 548, 614
PfoI	TCCNGGA	1 cut(s)	265
PkrI	GCNGC	7 cut(s)	232, 356, 433, 454, 457, 533, 576
Psp6I	CCWGG	1 cut(s)	265
PspGI	CCWGG	1 cut(s)	265
PspN4I	GGNNCC	5 cut(s)	264, 304, 336, 413, 530
PsuI	RGATCY	6 cut(s)	62, 95, 262, 302, 334, 403
RsaI	GTAC	1 cut(s)	287
RsaNI	GTAC	1 cut(s)	286
SacII	CCGCGG	1 cut(s)	456
SalI	GTCGAC	1 cut(s)	540
SaqAI	TTAA	1 cut(s)	708
SatI	GCNGC	7 cut(s)	231, 355, 432, 453, 456, 532, 575
Sau3AI	GATC	9 cut(s)	62, 95, 262, 302, 334, 403, 445, 511, 520
ScrFI	CCNGG	1 cut(s)	267
SduI	GDGCHC	4 cut(s)	244, 384, 634, 651
SetI	ASST	9 cut(s)	44, 172, 190, 321, 333, 423, 567, 714, 733
SfaNI	GCATC	2 cut(s)	21, 598
Sfr303I	CCGCGG	1 cut(s)	456
SgrAI	CRCCGGYG	1 cut(s)	350
SgrBI	CCGCGG	1 cut(s)	456
SseBI	AGGCCT	1 cut(s)	390
SspMI	CTAG	4 cut(s)	509, 684, 738, 760
StuI	AGGCCT	1 cut(s)	390
StyD4I	CCNGG	1 cut(s)	265
StyI	CCWWGG	1 cut(s)	535
TaaI	ACNGT	3 cut(s)	47, 290, 693
TaiI	ACGT	1 cut(s)	333
TaqI	TCGA	6 cut(s)	117, 327, 514, 541, 585, 628
TauI	GCSGC	4 cut(s)	357, 455, 458, 534
TfiI	GAWTC	3 cut(s)	110, 548, 614
Tru1I	TTAA	1 cut(s)	708
Tru9I	TTAA	1 cut(s)	708
TscAI	CASTG	1 cut(s)	651
TseFI	GTSAC	3 cut(s)	314, 473, 731
TseI	GCWGC	3 cut(s)	230, 431, 574
Tsp45I	GTSAC	3 cut(s)	314, 473, 731
TspRI	CASTG	1 cut(s)	651
XagI	CCTNNNNNAGG	1 cut(s)	467
XmiI	GTMKAC	1 cut(s)	541
XspI	CTAG	4 cut(s)	509, 684, 738, 760

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.