Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr4

Orthogroup ID

OG0013736

Physical Location & Seq

Genomic Coordinates Forward (+)

37866095 .. 37867232

Gene Structure 1138 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw4G016630.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 342 bp

ATGCCATTCCTAAACGCCTCCAACCCCCTTCACGATGCCATTGAGAAGCTCCAGCGCCTTCATCGCACCGATGTTGCGCGTGGCTCGCAGCACCACCCACCCATCTACCATGCGAACAGAGAGTTATGCGTCGCACTAGCGATTGGGAACTCTACCAGAGCCTCCGGTATGCTCGCTACCTGCATCATCCAACCCATCGATATGATCAAGATCTATGATTTGTTTGGCTCCGTTGATGGAGGAGAGGGGGGCTTTGAAATGGAGGAAGAACAAGGATGTTGTTCTGTGGTTTGGGTTGTCTCTGTTTCTGCTTTTTCCTCTTGCTTCGTCACTGAACAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TMEM135_C_rich Tim17

Protein Analysis

113

Amino Acids

12.35

Weight (kDa)

5.16

Isoelectric Point (pI)

39.8

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013736)

Species	Orthologous Gene IDs
malus_domestica	MD07G1055500.v1.1 MD17G1114100.v1.1
rosa_multiflora	Rmu_sc0002111.1_g000038 Rmu_sc0005223.1_g000024 Rmu_sc0005223.1_g000025 Rmu_sc0005664.1_g000044 Rmu_sc0009850.1_g000003
rosa_roxburghii	Rroxscaffold_1G00027310 Rroxscaffold_5G00355040 Rroxscaffold_7G00188050 Rroxscaffold_7G00199140 Rroxscaffold_7G00213780
rosa_rugosa	Rorug03G0293000
rosa_samantha	Rh5AG304200 Rh5AG409800 Rh5BG219300 Rh6BG266900
rosa_wichuraiana	Rw4G016630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	188
AccII	CGCG	1 cut(s)	79
AgsI	TTSAA	1 cut(s)	257
AluBI	AGCT	1 cut(s)	49
AluI	AGCT	1 cut(s)	49
Alw26I	GTCTC	1 cut(s)	304
ApeKI	GCWGC	1 cut(s)	88
AspLEI	GCGC	2 cut(s)	57, 79
BbvI	GCAGC	1 cut(s)	100
BccI	CCATC	3 cut(s)	110, 203, 230
BclI	TGATCA	1 cut(s)	204
BcoDI	GTCTC	1 cut(s)	304
BfaI	CTAG	1 cut(s)	137
BfoI	RGCGCY	1 cut(s)	58
BfuAI	ACCTGC	1 cut(s)	188
BglII	AGATCT	1 cut(s)	210
BisI	GCNGC	1 cut(s)	89
BlsI	GCNGC	1 cut(s)	90
BmiI	GGNNCC	1 cut(s)	229
BmsI	GCATC	2 cut(s)	25, 192
BpmI	CTGGAG	1 cut(s)	35
Bsa29I	ATCGAT	1 cut(s)	198
BsaBI	GATNNNNATC	1 cut(s)	209
BsaWI	WCCGGW	1 cut(s)	164
Bse8I	GATNNNNATC	1 cut(s)	209
BseCI	ATCGAT	1 cut(s)	198
BseGI	GGATG	2 cut(s)	186, 281
BseJI	GATNNNNATC	1 cut(s)	209
BseRI	GAGGAG	1 cut(s)	255
BseXI	GCAGC	1 cut(s)	100
Bsh1236I	CGCG	1 cut(s)	79
BshVI	ATCGAT	1 cut(s)	198
BsiSI	CCGG	1 cut(s)	165
BsmAI	GTCTC	1 cut(s)	304
Bsp143I	GATC	2 cut(s)	204, 210
BspDI	ATCGAT	1 cut(s)	198
BspFNI	CGCG	1 cut(s)	79
BspLI	GGNNCC	1 cut(s)	229
BspMI	ACCTGC	1 cut(s)	188
BssMI	GATC	2 cut(s)	204, 210
Bst4CI	ACNGT	1 cut(s)	339
BstC8I	GCNNGC	2 cut(s)	86, 174
BstF5I	GGATG	2 cut(s)	186, 281
BstFNI	CGCG	1 cut(s)	79
BstH2I	RGCGCY	1 cut(s)	58
BstHHI	GCGC	2 cut(s)	57, 79
BstKTI	GATC	2 cut(s)	207, 213
BstMAI	GTCTC	1 cut(s)	304
BstMBI	GATC	2 cut(s)	204, 210
BstMWI	GCNNNNNNNGC	2 cut(s)	63, 85
BstUI	CGCG	1 cut(s)	79
BstV1I	GCAGC	1 cut(s)	100
BstX2I	RGATCY	1 cut(s)	210
BstYI	RGATCY	1 cut(s)	210
Bsu15I	ATCGAT	1 cut(s)	198
BsuTUI	ATCGAT	1 cut(s)	198
BtgZI	GCGATG	1 cut(s)	47
BtsCI	GGATG	2 cut(s)	186, 281
BtsIMutI	CAGTG	1 cut(s)	330
BveI	ACCTGC	1 cut(s)	188
Cac8I	GCNNGC	2 cut(s)	86, 174
CfoI	GCGC	2 cut(s)	57, 79
ClaI	ATCGAT	1 cut(s)	198
CseI	GACGC	1 cut(s)	118
CviAII	CATG	1 cut(s)	110
CviJI	RGCY	5 cut(s)	49, 84, 161, 228, 252
CviKI_1	RGCY	5 cut(s)	49, 84, 161, 228, 252
DpnI	GATC	2 cut(s)	206, 212
DpnII	GATC	2 cut(s)	204, 210
FaeI	CATG	1 cut(s)	113
FaiI	YATR	5 cut(s)	111, 127, 170, 203, 216
FatI	CATG	1 cut(s)	109
FbaI	TGATCA	1 cut(s)	204
Fnu4HI	GCNGC	1 cut(s)	89
FokI	GGATG	2 cut(s)	173, 288
Fsp4HI	GCNGC	1 cut(s)	89
FspBI	CTAG	1 cut(s)	137
GlaI	GCGC	2 cut(s)	56, 78
GluI	GCNGC	1 cut(s)	89
GsuI	CTGGAG	1 cut(s)	35
HaeII	RGCGCY	1 cut(s)	58
HapII	CCGG	1 cut(s)	165
HgaI	GACGC	1 cut(s)	118
HhaI	GCGC	2 cut(s)	57, 79
Hin1II	CATG	1 cut(s)	113
Hin6I	GCGC	2 cut(s)	55, 77
HinP1I	GCGC	2 cut(s)	55, 77
HpaII	CCGG	1 cut(s)	165
Hpy188III	TCNNGA	2 cut(s)	32, 208
Hpy99I	CGWCG	1 cut(s)	134
HpyAV	CCTTC	2 cut(s)	38, 68
HpyCH4III	ACNGT	1 cut(s)	339
HpyCH4V	TGCA	1 cut(s)	183
HpyF10VI	GCNNNNNNNGC	2 cut(s)	63, 85
Hsp92II	CATG	1 cut(s)	113
HspAI	GCGC	2 cut(s)	55, 77
Ksp22I	TGATCA	1 cut(s)	204
Kzo9I	GATC	2 cut(s)	204, 210
LmnI	GCTCC	2 cut(s)	54, 233
LpnPI	CCDG	4 cut(s)	65, 169, 178, 193
Lsp1109I	GCAGC	1 cut(s)	100
LweI	GCATC	2 cut(s)	25, 192
MaeI	CTAG	1 cut(s)	137
MaeIII	GTNAC	1 cut(s)	328
MalI	GATC	2 cut(s)	206, 212
MboI	GATC	2 cut(s)	204, 210
MboII	GAAGA	1 cut(s)	278
MflI	RGATCY	1 cut(s)	210
MmeI	TCCRAC	2 cut(s)	45, 214
MnlI	CCTC	6 cut(s)	28, 172, 233, 238, 256, 328
MslI	CAYNNNNRTG	1 cut(s)	200
MspI	CCGG	1 cut(s)	165
MvnI	CGCG	1 cut(s)	79
MwoI	GCNNNNNNNGC	2 cut(s)	63, 85
NdeII	GATC	2 cut(s)	204, 210
NlaIII	CATG	1 cut(s)	113
NlaIV	GGNNCC	1 cut(s)	229
NmuCI	GTSAC	1 cut(s)	328
PkrI	GCNGC	1 cut(s)	90
PspN4I	GGNNCC	1 cut(s)	229
PsuI	RGATCY	1 cut(s)	210
RseI	CAYNNNNRTG	1 cut(s)	200
SatI	GCNGC	1 cut(s)	89
Sau3AI	GATC	2 cut(s)	204, 210
SetI	ASST	2 cut(s)	51, 182
SfaNI	GCATC	2 cut(s)	25, 192
SmiMI	CAYNNNNRTG	1 cut(s)	200
SspMI	CTAG	1 cut(s)	137
TaaI	ACNGT	1 cut(s)	339
TaqI	TCGA	1 cut(s)	198
TscAI	CASTG	1 cut(s)	337
TseFI	GTSAC	1 cut(s)	328
TseI	GCWGC	1 cut(s)	88
Tsp45I	GTSAC	1 cut(s)	328
TspDTI	ATGAA	1 cut(s)	50
TspGWI	ACGGA	1 cut(s)	220
TspRI	CASTG	1 cut(s)	337
XspI	CTAG	1 cut(s)	137

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.